BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013538
         (1126 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-l...   216   e-104
ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-l...   214   e-103
gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like pr...   221   e-103
emb|CBI29839.3| unnamed protein product [Vitis vinifera]              206   e-102
gb|ABC01901.1| 3'-5'-exoribonuclease/RNA binding-like protein [S...   222   e-101

>ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
          Length = 303

 Score =  216 bits (549), Expect(2) = e-104
 Identities = 103/134 (76%), Positives = 122/134 (91%)
 Frame = -2

Query: 1125 DAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGGVAFADGSALVKIGHTTMLAAI 946
            DAFRRLFPLR++ER LL+SIRPDARPLG+ARDT++ALG VA ADGSAL KIG TTMLAA+
Sbjct: 17   DAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSALAKIGCTTMLAAV 76

Query: 945  KMEIMTPSVGSPDEGSLAIDFHMPPICSPLIRPGRPAEVAAIISKQLTDAIISSGVVNLK 766
            KME+MTP   SPDEGS+AI+F+MPPICSPL+RPGRPAE A ++SKQL+D I+SSG++NLK
Sbjct: 77   KMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTILSSGMINLK 136

Query: 765  ELCLISGKAAWMAY 724
            EL L+SGKAAWMAY
Sbjct: 137  ELSLVSGKAAWMAY 150



 Score =  191 bits (486), Expect(2) = e-104
 Identities = 100/158 (63%), Positives = 113/158 (71%)
 Frame = -3

Query: 629 AWMAYLDVYCLDADGXXXXXXXXXXXXXXXXXHIPAVSVNDDGRXXXXXXXXXXXXXXXE 450
           AWMAYLD+YCLDADG                  IP VS+N++GR               E
Sbjct: 146 AWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVSEENEEGKSEKE 205

Query: 449 PFNQSTRKLKLSCMPFSLTCILHKKHILADPTAEEESVMESLVTVVLDLSGQLVSFNKPG 270
           P N+  RKL LS +PFSLTCILHK +ILADPTAEEES+ME+LVTVVLD SGQLVS  KPG
Sbjct: 206 PVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSGQLVSLYKPG 265

Query: 269 GPVLAYTSAVQDCIALTRQRVKELQRILNDAIADMELD 156
           GPVLAY SAVQDCIALTRQRVKEL+ ILN+AI+DME+D
Sbjct: 266 GPVLAYASAVQDCIALTRQRVKELKSILNEAISDMEVD 303


>ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
            gi|449503802|ref|XP_004162184.1| PREDICTED: exosome
            complex component RRP43-like [Cucumis sativus]
          Length = 304

 Score =  214 bits (546), Expect(2) = e-103
 Identities = 101/134 (75%), Positives = 119/134 (88%)
 Frame = -2

Query: 1125 DAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGGVAFADGSALVKIGHTTMLAAI 946
            DAFRRLFP++FYERHL ESIRPD R LGKARDTT+ALG V+ A+GSAL KIG TTMLAAI
Sbjct: 18   DAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLAAI 77

Query: 945  KMEIMTPSVGSPDEGSLAIDFHMPPICSPLIRPGRPAEVAAIISKQLTDAIISSGVVNLK 766
            KME+MTPSV SPDEG +A+DFHMPP+CSP++RPGRPAE A +ISKQL+D I SSG+++L+
Sbjct: 78   KMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLR 137

Query: 765  ELCLISGKAAWMAY 724
            EL L+ GKAAWMAY
Sbjct: 138  ELSLVKGKAAWMAY 151



 Score =  189 bits (481), Expect(2) = e-103
 Identities = 99/158 (62%), Positives = 114/158 (72%)
 Frame = -3

Query: 629 AWMAYLDVYCLDADGXXXXXXXXXXXXXXXXXHIPAVSVNDDGRXXXXXXXXXXXXXXXE 450
           AWMAYLD+YCLDADG                  IP V++NDDG+               E
Sbjct: 147 AWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVCEEEGGENFEKE 206

Query: 449 PFNQSTRKLKLSCMPFSLTCILHKKHILADPTAEEESVMESLVTVVLDLSGQLVSFNKPG 270
           P N+  RKLKL+ +PFSLTC+LHKK+ILADPTAEEESVME++VTVVLD SGQLVSF KPG
Sbjct: 207 PVNKENRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPG 266

Query: 269 GPVLAYTSAVQDCIALTRQRVKELQRILNDAIADMELD 156
           G VLAYTSAVQDCIALTRQR KELQ IL++AI+ ME+D
Sbjct: 267 GSVLAYTSAVQDCIALTRQRSKELQIILDEAISGMEID 304


>gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
            tuberosum]
          Length = 314

 Score =  221 bits (563), Expect(2) = e-103
 Identities = 104/134 (77%), Positives = 122/134 (91%)
 Frame = -2

Query: 1125 DAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGGVAFADGSALVKIGHTTMLAAI 946
            DAFRRLFPLR++E HLL+S+RPDAR LG ARDTT+ALG VA ADGSAL KIG TTMLAAI
Sbjct: 17   DAFRRLFPLRYHEHHLLKSVRPDARKLGSARDTTLALGAVASADGSALAKIGSTTMLAAI 76

Query: 945  KMEIMTPSVGSPDEGSLAIDFHMPPICSPLIRPGRPAEVAAIISKQLTDAIISSGVVNLK 766
            KME+MTP+V  PDEGS+AI+FHMPPICSPL+RPGRPAE A++ISKQL+D I+SSG+++LK
Sbjct: 77   KMEVMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVISKQLSDTILSSGMIDLK 136

Query: 765  ELCLISGKAAWMAY 724
            ELCL+ GKAAWMAY
Sbjct: 137  ELCLVGGKAAWMAY 150



 Score =  181 bits (460), Expect(2) = e-103
 Identities = 92/157 (58%), Positives = 109/157 (69%)
 Frame = -3

Query: 629 AWMAYLDVYCLDADGXXXXXXXXXXXXXXXXXHIPAVSVNDDGRXXXXXXXXXXXXXXXE 450
           AWMAYLD+YCLDADG                 +IP VS+NDDGR               E
Sbjct: 146 AWMAYLDIYCLDADGALFDTALLSAVAAFSHLNIPVVSLNDDGRIVLVSEDTVRLKLEKE 205

Query: 449 PFNQSTRKLKLSCMPFSLTCILHKKHILADPTAEEESVMESLVTVVLDLSGQLVSFNKPG 270
           P N   RKLKL+ +PFSLTCILHK +ILADPTAEEE +ME++VTVVLD S QLVS NKPG
Sbjct: 206 PVNTEKRKLKLNSLPFSLTCILHKNYILADPTAEEEPIMETIVTVVLDSSHQLVSLNKPG 265

Query: 269 GPVLAYTSAVQDCIALTRQRVKELQRILNDAIADMEL 159
           GPVL++TS +QDCI L R+R KELQ +LN+AI+DME+
Sbjct: 266 GPVLSHTSVIQDCIGLARRRAKELQSVLNEAISDMEV 302


>emb|CBI29839.3| unnamed protein product [Vitis vinifera]
          Length = 311

 Score =  206 bits (525), Expect(2) = e-102
 Identities = 102/142 (71%), Positives = 121/142 (85%), Gaps = 8/142 (5%)
 Frame = -2

Query: 1125 DAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGGVAFADGSALVKIGHTTMLAAI 946
            DAFRRLFPLR++ER LL+SIRPDARPLG+ARDT++ALG VA ADGSAL KIG TTMLAA+
Sbjct: 17   DAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSALAKIGCTTMLAAV 76

Query: 945  KMEIMTPSVGSPDEGSLAIDFHMPPICSPLIRPGRPAEVAAIISKQLTDAIIS------- 787
            KME+MTP   SPDEGS+AI+F+MPPICSPL+RPGRPAE A ++SKQL+D I+        
Sbjct: 77   KMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTILRHVNVVTS 136

Query: 786  -SGVVNLKELCLISGKAAWMAY 724
             SG++NLKEL L+SGKAAWMAY
Sbjct: 137  FSGMINLKELSLVSGKAAWMAY 158



 Score =  191 bits (486), Expect(2) = e-102
 Identities = 100/158 (63%), Positives = 113/158 (71%)
 Frame = -3

Query: 629 AWMAYLDVYCLDADGXXXXXXXXXXXXXXXXXHIPAVSVNDDGRXXXXXXXXXXXXXXXE 450
           AWMAYLD+YCLDADG                  IP VS+N++GR               E
Sbjct: 154 AWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVSEENEEGKSEKE 213

Query: 449 PFNQSTRKLKLSCMPFSLTCILHKKHILADPTAEEESVMESLVTVVLDLSGQLVSFNKPG 270
           P N+  RKL LS +PFSLTCILHK +ILADPTAEEES+ME+LVTVVLD SGQLVS  KPG
Sbjct: 214 PVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIMETLVTVVLDSSGQLVSLYKPG 273

Query: 269 GPVLAYTSAVQDCIALTRQRVKELQRILNDAIADMELD 156
           GPVLAY SAVQDCIALTRQRVKEL+ ILN+AI+DME+D
Sbjct: 274 GPVLAYASAVQDCIALTRQRVKELKSILNEAISDMEVD 311


>gb|ABC01901.1| 3'-5'-exoribonuclease/RNA binding-like protein [Solanum tuberosum]
          Length = 303

 Score =  222 bits (565), Expect(2) = e-101
 Identities = 105/134 (78%), Positives = 124/134 (92%)
 Frame = -2

Query: 1125 DAFRRLFPLRFYERHLLESIRPDARPLGKARDTTVALGGVAFADGSALVKIGHTTMLAAI 946
            DAFRRLFPLR++E+HLL+S+RPDAR LG ARDTT+ALG VA A+GSAL KIG TTMLAAI
Sbjct: 17   DAFRRLFPLRYHEQHLLKSVRPDARKLGSARDTTLALGAVASAEGSALAKIGSTTMLAAI 76

Query: 945  KMEIMTPSVGSPDEGSLAIDFHMPPICSPLIRPGRPAEVAAIISKQLTDAIISSGVVNLK 766
            KMEIMTP+V  PDEGS+AI+FHMPPICSPL+RPGRPAEVA++ISKQL+D I+SSG+++LK
Sbjct: 77   KMEIMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEVASVISKQLSDTILSSGMIDLK 136

Query: 765  ELCLISGKAAWMAY 724
            ELCL+ GKAAWMAY
Sbjct: 137  ELCLVGGKAAWMAY 150



 Score =  176 bits (445), Expect(2) = e-101
 Identities = 89/158 (56%), Positives = 109/158 (68%)
 Frame = -3

Query: 629 AWMAYLDVYCLDADGXXXXXXXXXXXXXXXXXHIPAVSVNDDGRXXXXXXXXXXXXXXXE 450
           AWMAYLD+YCLDADG                 +IP VS+N+DGR               +
Sbjct: 146 AWMAYLDIYCLDADGSLFDAALLSTVAAFSHLNIPVVSLNEDGRIVLVSEDNIQLKLEKQ 205

Query: 449 PFNQSTRKLKLSCMPFSLTCILHKKHILADPTAEEESVMESLVTVVLDLSGQLVSFNKPG 270
           P N   RKLKL+  PFSLTC+LHK +ILADPTAEEES+ME+ VTVVLD S QLVS  KPG
Sbjct: 206 PVNTEKRKLKLNSPPFSLTCLLHKNYILADPTAEEESIMETAVTVVLDSSYQLVSLYKPG 265

Query: 269 GPVLAYTSAVQDCIALTRQRVKELQRILNDAIADMELD 156
           GPV A+TS +QDC+AL ++RVKELQ +LN+AI+DME++
Sbjct: 266 GPVHAHTSVIQDCVALAKRRVKELQSVLNEAISDMEVE 303