BLASTX nr result
ID: Coptis21_contig00013495
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00013495
(1100 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containi... 493 e-137
emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera] 492 e-137
ref|XP_002329801.1| predicted protein [Populus trichocarpa] gi|2... 472 e-131
ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containi... 442 e-122
gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula] 434 e-119
>ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera] gi|296087974|emb|CBI35257.3| unnamed
protein product [Vitis vinifera]
Length = 503
Score = 493 bits (1270), Expect = e-137
Identities = 233/341 (68%), Positives = 285/341 (83%)
Frame = -2
Query: 1069 ESQLKMAKKFFKYMKEMGVPRSTRIINILIKAFCMNEGTMDSALRVFREMPDHGCTPDSY 890
E+QLK+A +F++YM+EMG+P S +N+LIKA C N GTMD+ALR+FREMP+ GC PDSY
Sbjct: 133 ENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSY 192
Query: 889 TYGTLISGMCKFGKINEAKDLFQEMETKGCSPTVVTYTSLIHGFCVSKKLDEAMNFFGEM 710
TYGTLI+G+C+ GKI EAK+LF+EMETK CSPTVVTYTSLIHG C SK LD A+ EM
Sbjct: 193 TYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEM 252
Query: 709 SSKGIEPNVVTFSSLMDGLCKVGRSSEAIGLLEKMISKLHLPNMITYSTLVHGLCKEGNL 530
+SKGI+PNV T+SSLMDG CK G SS A+ LL+ M+S+ HLPNMITYSTLVHGLCKEG L
Sbjct: 253 ASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKL 312
Query: 529 QGVVEVLDRMKLQDLKPDAGLYGKLVTGLCELSKFQDAANFLDEMVLGGISPNHVTLNLH 350
Q VE+LDRMKLQ L+PDAGLYGK+++G C++ KF +AANFLDEMVLGGISPN +T +LH
Sbjct: 313 QEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLH 372
Query: 349 VKINNLVIQGLCSENDLNRAFQVYLSTRTRGISVSAKSFSSLVACFCKKGDVHKAARIVS 170
V+I+N+V+QGLC+E+ NRAFQ+YLS RTRGIS+ AK+F SLV FC KGD+HKAA +V
Sbjct: 373 VRIHNIVVQGLCTEHP-NRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVD 431
Query: 169 EMVLDGCVPDEDTWNAAVGGFWCRKKARDAADLLQTELMGE 47
EMVLDGC+PDE TWNA V FW R+K R++A+L+Q ELM E
Sbjct: 432 EMVLDGCIPDEVTWNAVVCAFWDRRKVRESAELVQVELMVE 472
>emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
Length = 477
Score = 492 bits (1266), Expect = e-137
Identities = 232/342 (67%), Positives = 283/342 (82%)
Frame = -2
Query: 1069 ESQLKMAKKFFKYMKEMGVPRSTRIINILIKAFCMNEGTMDSALRVFREMPDHGCTPDSY 890
E+QLK+A +F++YM+EMG+P S +N+LIKA C N GTMD+ALR+FREMP+ GC P SY
Sbjct: 133 ENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSY 192
Query: 889 TYGTLISGMCKFGKINEAKDLFQEMETKGCSPTVVTYTSLIHGFCVSKKLDEAMNFFGEM 710
TYGTLI G+C+ GKI EAK+LF+EMETK CSPTVVTY SLIHG C SK LD A+ EM
Sbjct: 193 TYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEM 252
Query: 709 SSKGIEPNVVTFSSLMDGLCKVGRSSEAIGLLEKMISKLHLPNMITYSTLVHGLCKEGNL 530
+SKGI+PNV T+SSLMDG CK G SS A+ LL+ M+S+ HLPNMITYSTLVHGLCKEG L
Sbjct: 253 ASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKL 312
Query: 529 QGVVEVLDRMKLQDLKPDAGLYGKLVTGLCELSKFQDAANFLDEMVLGGISPNHVTLNLH 350
Q VE+LDRMKLQ L+PDAGLYGK+++G C++ KF +AANFLDEMVLGGISPN +T +LH
Sbjct: 313 QEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLH 372
Query: 349 VKINNLVIQGLCSENDLNRAFQVYLSTRTRGISVSAKSFSSLVACFCKKGDVHKAARIVS 170
V+I+N+V+QGLC+E+ NRAFQ+YLS RTRGIS+ AK+F SLV FC KGD+HKAA +V
Sbjct: 373 VRIHNIVVQGLCTEHP-NRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVD 431
Query: 169 EMVLDGCVPDEDTWNAAVGGFWCRKKARDAADLLQTELMGEF 44
EMVLDGC+PDE TWNA V FW R+K R++A+L+Q ELMG F
Sbjct: 432 EMVLDGCIPDEXTWNAVVCAFWDRRKVRESAELVQVELMGTF 473
>ref|XP_002329801.1| predicted protein [Populus trichocarpa] gi|222870863|gb|EEF07994.1|
predicted protein [Populus trichocarpa]
Length = 478
Score = 472 bits (1214), Expect = e-131
Identities = 221/342 (64%), Positives = 270/342 (78%)
Frame = -2
Query: 1069 ESQLKMAKKFFKYMKEMGVPRSTRIINILIKAFCMNEGTMDSALRVFREMPDHGCTPDSY 890
E+QLK+A F+KYM+EMGV +S +N+LIKA C N GT+D+A +FREMP GC PDSY
Sbjct: 133 ENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSY 192
Query: 889 TYGTLISGMCKFGKINEAKDLFQEMETKGCSPTVVTYTSLIHGFCVSKKLDEAMNFFGEM 710
TYGTLI+G+CK GK EAK+LF+EM+TKGCSP+VVTY+ L+HG C + +DEAM F +M
Sbjct: 193 TYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKM 252
Query: 709 SSKGIEPNVVTFSSLMDGLCKVGRSSEAIGLLEKMISKLHLPNMITYSTLVHGLCKEGNL 530
K IEPNV T+SSLMDGLCK G S EA+ LLE M+ K H PNM+TYSTL++GLCKEG L
Sbjct: 253 KKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKL 312
Query: 529 QGVVEVLDRMKLQDLKPDAGLYGKLVTGLCELSKFQDAANFLDEMVLGGISPNHVTLNLH 350
VE LDRMKLQ LKPDAGLYGK++ G C + KFQ+AA +LDEMVLG ISPN VT +LH
Sbjct: 313 AEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLH 372
Query: 349 VKINNLVIQGLCSENDLNRAFQVYLSTRTRGISVSAKSFSSLVACFCKKGDVHKAARIVS 170
VK+NN+V+QGLC+ +LNR+FQ+Y+ RTRGIS+ A +F SLV CFCKKGD+HKAARI
Sbjct: 373 VKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFD 432
Query: 169 EMVLDGCVPDEDTWNAAVGGFWCRKKARDAADLLQTELMGEF 44
EMVLDGCVPD W+A VGGFW R+K R+A + + ELM EF
Sbjct: 433 EMVLDGCVPDHGIWSAVVGGFWDRRKVREAFESIVVELMNEF 474
>ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100-like
[Glycine max]
Length = 479
Score = 442 bits (1136), Expect = e-122
Identities = 209/342 (61%), Positives = 265/342 (77%)
Frame = -2
Query: 1069 ESQLKMAKKFFKYMKEMGVPRSTRIINILIKAFCMNEGTMDSALRVFREMPDHGCTPDSY 890
E+ +K A F++ M+E+G+P S +NILIKA C N+ T+DSALR+F+EMP+ GC PDSY
Sbjct: 133 ENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSY 192
Query: 889 TYGTLISGMCKFGKINEAKDLFQEMETKGCSPTVVTYTSLIHGFCVSKKLDEAMNFFGEM 710
TYGTLI+G+C+ G I+EAK+LF+EME KG S +VVTYTSLIHG C S LDEA+ EM
Sbjct: 193 TYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEM 252
Query: 709 SSKGIEPNVVTFSSLMDGLCKVGRSSEAIGLLEKMISKLHLPNMITYSTLVHGLCKEGNL 530
IEPNV T+SSLMDGLCK G SS+A+ LLE M K HLPNM+TYSTL++GLCKE L
Sbjct: 253 KRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKL 312
Query: 529 QGVVEVLDRMKLQDLKPDAGLYGKLVTGLCELSKFQDAANFLDEMVLGGISPNHVTLNLH 350
+ VE+LDRM++Q LKP+AGLYGK+++GLC +Q+AANF+DEMVLGGISPN + +LH
Sbjct: 313 REAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLH 372
Query: 349 VKINNLVIQGLCSENDLNRAFQVYLSTRTRGISVSAKSFSSLVACFCKKGDVHKAARIVS 170
V+++N+V+QGLC+ D RAFQ+YLS RTR ISV +F LV CFCK+GD+HKAARI+
Sbjct: 373 VRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILE 432
Query: 169 EMVLDGCVPDEDTWNAAVGGFWCRKKARDAADLLQTELMGEF 44
EMVLDGC+PDE WN +GG W RKK R+A + L EL +F
Sbjct: 433 EMVLDGCIPDEGVWNVVIGGLWDRKKVREATEQLLVELQQKF 474
>gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 434 bits (1116), Expect = e-119
Identities = 205/342 (59%), Positives = 261/342 (76%)
Frame = -2
Query: 1069 ESQLKMAKKFFKYMKEMGVPRSTRIINILIKAFCMNEGTMDSALRVFREMPDHGCTPDSY 890
E+ +K A F+K M+E G+P + +NILIKA C NE T++SA R+FREMP+ GC PDSY
Sbjct: 133 ENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSY 192
Query: 889 TYGTLISGMCKFGKINEAKDLFQEMETKGCSPTVVTYTSLIHGFCVSKKLDEAMNFFGEM 710
TYGTLI+G+CK GKI++AK+L EME KG SP+VV+YTSLIHG C S LDEA+ EM
Sbjct: 193 TYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEM 252
Query: 709 SSKGIEPNVVTFSSLMDGLCKVGRSSEAIGLLEKMISKLHLPNMITYSTLVHGLCKEGNL 530
GIEPNV T+SSLMDGLCK G SS+A+ LLE M+ + LPNM+TYSTL++GLCKEG
Sbjct: 253 IINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKH 312
Query: 529 QGVVEVLDRMKLQDLKPDAGLYGKLVTGLCELSKFQDAANFLDEMVLGGISPNHVTLNLH 350
+ VE+LDRM+LQ LKPDAG+YG++++GLC +Q+AANF+DEM LGGISPN + H
Sbjct: 313 REAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFH 372
Query: 349 VKINNLVIQGLCSENDLNRAFQVYLSTRTRGISVSAKSFSSLVACFCKKGDVHKAARIVS 170
VK++N+V+QGLC+ D RAFQ+YLS RTRGISV +F LV CFCK+GD++KAARI+
Sbjct: 373 VKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILE 432
Query: 169 EMVLDGCVPDEDTWNAAVGGFWCRKKARDAADLLQTELMGEF 44
EM+LDGC+PDE WN + G W RKK R+ +LL EL +F
Sbjct: 433 EMILDGCIPDEGMWNVLMCGLWDRKKVRETTELLVAELKQKF 474
Score = 129 bits (323), Expect = 2e-27
Identities = 81/304 (26%), Positives = 141/304 (46%), Gaps = 1/304 (0%)
Frame = -2
Query: 934 VFREMPDHGCTPDSYTYGTLISGMCKFGKINEAKDLFQEMETKGCSPTVVTYTSLIHGFC 755
+ M C + T+ G + + +A +F +ME PT +Y ++
Sbjct: 72 MLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILV 131
Query: 754 VSKKLDEAMNFFGEMSSKGIEPNVVTFSSLMDGLCKVGRSSE-AIGLLEKMISKLHLPNM 578
+ A+ F+ EM KGI P VV+ + L+ LCK + E A L +M ++ P+
Sbjct: 132 EENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDS 191
Query: 577 ITYSTLVHGLCKEGNLQGVVEVLDRMKLQDLKPDAGLYGKLVTGLCELSKFQDAANFLDE 398
TY TL++GLCK G + E+LD M+ + L P Y L+ GLC+ + +A L+E
Sbjct: 192 YTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEE 251
Query: 397 MVLGGISPNHVTLNLHVKINNLVIQGLCSENDLNRAFQVYLSTRTRGISVSAKSFSSLVA 218
M++ GI PN T + ++ GLC ++A ++ R + + ++S+L+
Sbjct: 252 MIINGIEPNVFTYSS-------LMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLIN 304
Query: 217 CFCKKGDVHKAARIVSEMVLDGCVPDEDTWNAAVGGFWCRKKARDAADLLQTELMGEFAT 38
CK+G +A I+ M L G PD + + G ++AA+ + +G +
Sbjct: 305 GLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISP 364
Query: 37 PKCS 26
+ S
Sbjct: 365 NRAS 368
Score = 120 bits (301), Expect = 6e-25
Identities = 83/332 (25%), Positives = 154/332 (46%), Gaps = 4/332 (1%)
Frame = -2
Query: 1051 AKKFFKYMKEMGVPRSTRIINILIKAFCMNEGTMDSALRVF---REMPDHGCTPDSYTYG 881
+K FK+ K+ I N L++ E ++ L +F E +G D T+G
Sbjct: 3 SKTLFKWPKQ--------ITNSLVEQLIKAEKDINKTLVMFDSATEEYSNGFRHDHNTFG 54
Query: 880 TLISGMCKFGKINEAKDLFQEMETKGCSPTVVTYTSLIHGFCVSKKLDEAMNFFGEMSSK 701
+I + + A+ + + M+ + C T + ++ G+ + +A+ F +M
Sbjct: 55 AMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDF 114
Query: 700 GIEPNVVTFSSLMDGLCKVGRSSEAIGLLEKMISKLHLPNMITYSTLVHGLCK-EGNLQG 524
++P ++ ++ D L + AIG ++M K P +++ + L+ LCK E ++
Sbjct: 115 QVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVES 174
Query: 523 VVEVLDRMKLQDLKPDAGLYGKLVTGLCELSKFQDAANFLDEMVLGGISPNHVTLNLHVK 344
+ M + +PD+ YG L+ GLC+L K A LDEM G+SP+ V+
Sbjct: 175 AFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSY----- 229
Query: 343 INNLVIQGLCSENDLNRAFQVYLSTRTRGISVSAKSFSSLVACFCKKGDVHKAARIVSEM 164
+I GLC N+L+ A ++ GI + ++SSL+ CK G +A ++ M
Sbjct: 230 --TSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVM 287
Query: 163 VLDGCVPDEDTWNAAVGGFWCRKKARDAADLL 68
V +P+ T++ + G K R+A ++L
Sbjct: 288 VRRRLLPNMVTYSTLINGLCKEGKHREAVEIL 319