BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013404
         (1409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   183   8e-44
ref|XP_004145446.1| PREDICTED: DNA-directed RNA polymerases I, I...   181   4e-43
ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycin...   177   6e-42
ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycin...   176   1e-41
gb|AFK38034.1| unknown [Lotus japonicus]                              173   1e-40

>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
            gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
            lyrata subsp. lyrata]
          Length = 205

 Score =  183 bits (465), Expect = 8e-44
 Identities = 107/246 (43%), Positives = 153/246 (62%)
 Frame = -3

Query: 1095 EEEITRLFRVRRTALQMLRDRGYYVHKSRVNMTRPRFVQEFGKEDTIVLQGEDNTKYDPT 916
            EEEI RL+R+++T +QML+DRGY++  S + MT+ +F+++ G          DN K    
Sbjct: 4    EEEIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHG----------DNMK---- 49

Query: 915  EGGEEDPTYIVVKRQNIAIRARXXXXXXXXXKANEDSDEEFRDDEIHVYFHDQEVASVKI 736
                ED   + VKR                   N++SD+      ++++F D+    VK 
Sbjct: 50   ---REDLVTLKVKR-------------------NDNSDQ------LYIFFPDEAKVGVKT 81

Query: 735  IKHYIDTVKNSGVLRAILVSQAMKLSAAAKKSIDKKNAQYFHFELFEEKELIANITEHHL 556
            +K Y + +K+  V RAILV Q   L+  A+  I + +++ FH E+F+E E++ NI EH L
Sbjct: 82   MKMYTNRMKSENVYRAILVVQ-QNLTPFARTCISEISSK-FHLEVFQEAEMLVNIKEHVL 139

Query: 555  VPKHKVLSTEEKQELLDRYTSHETQLPRMLITDPIARYYGLKRGQVVKITRKSDTAGEYE 376
            VP+H+VL+TEEK+ LL+RYT  ETQLPR+ +TDPIARY+GLKRGQVVKI R S+TAG Y 
Sbjct: 140  VPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYV 199

Query: 375  TYRIVV 358
            TYR VV
Sbjct: 200  TYRYVV 205


>ref|XP_004145446.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
            RPABC1-like [Cucumis sativus]
            gi|449487698|ref|XP_004157756.1| PREDICTED: DNA-directed
            RNA polymerases I, II, and III subunit RPABC1-like
            [Cucumis sativus]
          Length = 205

 Score =  181 bits (459), Expect = 4e-43
 Identities = 105/247 (42%), Positives = 149/247 (60%)
 Frame = -3

Query: 1098 NEEEITRLFRVRRTALQMLRDRGYYVHKSRVNMTRPRFVQEFGKEDTIVLQGEDNTKYDP 919
            +EEEIT+LFR R+T LQMLRDRG+ V    + M+R +F  ++G+                
Sbjct: 4    SEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGE---------------- 47

Query: 918  TEGGEEDPTYIVVKRQNIAIRARXXXXXXXXXKANEDSDEEFRDDEIHVYFHDQEVASVK 739
                        +K++++ I                 S      D+I+V+F ++   SVK
Sbjct: 48   -----------TMKKEDLVINK---------------SMRNNSSDQIYVFFPEEPKVSVK 81

Query: 738  IIKHYIDTVKNSGVLRAILVSQAMKLSAAAKKSIDKKNAQYFHFELFEEKELIANITEHH 559
             ++ YI+ +K+  V RAILV Q  KLS+ A+ SI +  A  FH E+F+E EL+ NI +H 
Sbjct: 82   TVRTYINRMKSDNVFRAILVVQE-KLSSFARSSICE--APKFHLEVFQEAELLVNIKDHV 138

Query: 558  LVPKHKVLSTEEKQELLDRYTSHETQLPRMLITDPIARYYGLKRGQVVKITRKSDTAGEY 379
            L+P+H++L+ E+K+ LL+RYT  +TQLPRM +TDPIARYYG+KRGQVVKI R S+TAG Y
Sbjct: 139  LIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGMKRGQVVKIIRPSETAGRY 198

Query: 378  ETYRIVV 358
             TYR VV
Sbjct: 199  VTYRYVV 205


>ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
            gi|255625665|gb|ACU13177.1| unknown [Glycine max]
          Length = 206

 Score =  177 bits (449), Expect = 6e-42
 Identities = 101/247 (40%), Positives = 147/247 (59%)
 Frame = -3

Query: 1098 NEEEITRLFRVRRTALQMLRDRGYYVHKSRVNMTRPRFVQEFGKEDTIVLQGEDNTKYDP 919
            +EEE+ RL+R+R+T +QMLRDRG+ V    +NM++  F  ++G+                
Sbjct: 4    SEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEH--------------- 48

Query: 918  TEGGEEDPTYIVVKRQNIAIRARXXXXXXXXXKANEDSDEEFRDDEIHVYFHDQEVASVK 739
                        +KR+++ I                 S ++   D+I+V+F D+    VK
Sbjct: 49   ------------MKREDLVINK---------------SKKDNSGDQIYVFFPDEPKVGVK 81

Query: 738  IIKHYIDTVKNSGVLRAILVSQAMKLSAAAKKSIDKKNAQYFHFELFEEKELIANITEHH 559
             +K Y + + +  V RAILV+Q   L+  A+  I + +++ FH E+F+E EL+ NI EH 
Sbjct: 82   TMKTYTNRMNSENVYRAILVTQT-NLTPFARTCISEISSK-FHLEVFQEAELLVNIKEHE 139

Query: 558  LVPKHKVLSTEEKQELLDRYTSHETQLPRMLITDPIARYYGLKRGQVVKITRKSDTAGEY 379
            LVP+H+VL+  EK+ LL+RYT  ETQLPR+ +TDP+ARYYGLKRGQVVKI R S+TAG Y
Sbjct: 140  LVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRY 199

Query: 378  ETYRIVV 358
             TYR VV
Sbjct: 200  VTYRFVV 206


>ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
            gi|255627545|gb|ACU14117.1| unknown [Glycine max]
          Length = 206

 Score =  176 bits (446), Expect = 1e-41
 Identities = 101/247 (40%), Positives = 146/247 (59%)
 Frame = -3

Query: 1098 NEEEITRLFRVRRTALQMLRDRGYYVHKSRVNMTRPRFVQEFGKEDTIVLQGEDNTKYDP 919
            +EEEI RL+R+R+T +QMLRDR + V    +NM++  F  ++G+                
Sbjct: 4    SEEEIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEH--------------- 48

Query: 918  TEGGEEDPTYIVVKRQNIAIRARXXXXXXXXXKANEDSDEEFRDDEIHVYFHDQEVASVK 739
                        +KR+++ I                 S ++   D+I+V+F D+    VK
Sbjct: 49   ------------MKREDLVINK---------------SKKDNSGDQIYVFFPDEPKVGVK 81

Query: 738  IIKHYIDTVKNSGVLRAILVSQAMKLSAAAKKSIDKKNAQYFHFELFEEKELIANITEHH 559
             +K Y + + +  V RAILV+Q   L+  A+  I + +++ FH E+F+E EL+ NI EH 
Sbjct: 82   TMKTYTNRMNSENVYRAILVTQT-NLTPFARTCISEISSK-FHLEVFQEAELLVNIKEHE 139

Query: 558  LVPKHKVLSTEEKQELLDRYTSHETQLPRMLITDPIARYYGLKRGQVVKITRKSDTAGEY 379
            LVP+H+VL+  EK+ LL+RYT  ETQLPR+ +TDP+ARYYGLKRGQVVKI R S+TAG Y
Sbjct: 140  LVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRY 199

Query: 378  ETYRIVV 358
             TYR VV
Sbjct: 200  VTYRFVV 206


>gb|AFK38034.1| unknown [Lotus japonicus]
          Length = 206

 Score =  173 bits (438), Expect = 1e-40
 Identities = 103/246 (41%), Positives = 145/246 (58%)
 Frame = -3

Query: 1095 EEEITRLFRVRRTALQMLRDRGYYVHKSRVNMTRPRFVQEFGKEDTIVLQGEDNTKYDPT 916
            EE+IT+L R+R+T +QMLRDR Y V    +NM+R  F  ++G          DN      
Sbjct: 5    EEDITKLHRIRKTVMQMLRDRNYLVGDFEINMSRHEFKTKYG----------DN------ 48

Query: 915  EGGEEDPTYIVVKRQNIAIRARXXXXXXXXXKANEDSDEEFRDDEIHVYFHDQEVASVKI 736
                       +KR+++ I                 + ++   D+I+V+F D+    VK 
Sbjct: 49   -----------MKREDLTINK---------------TKKDGPSDQIYVFFPDEPKVGVKT 82

Query: 735  IKHYIDTVKNSGVLRAILVSQAMKLSAAAKKSIDKKNAQYFHFELFEEKELIANITEHHL 556
            +K Y + + +  V RAILV Q+  L+  AK  I + +++ F  E+F+E EL+ NI EH L
Sbjct: 83   MKTYTNRMNSENVFRAILVCQS-NLTPFAKTCISEMSSK-FQLEVFQEAELLVNIKEHVL 140

Query: 555  VPKHKVLSTEEKQELLDRYTSHETQLPRMLITDPIARYYGLKRGQVVKITRKSDTAGEYE 376
            VP+H++L+  EK+ LL+RYT  ETQLPR+ ITDP+ARYYGLKRGQVVKI R S+TAG Y 
Sbjct: 141  VPEHQILNETEKKTLLERYTVKETQLPRIQITDPVARYYGLKRGQVVKIIRPSETAGRYI 200

Query: 375  TYRIVV 358
            TYR VV
Sbjct: 201  TYRFVV 206