BLASTX nr result

ID: Coptis21_contig00012972 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012972
         (712 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR16066.1| unknown [Picea sitchensis]                              65   2e-08
gb|AFW67928.1| hypothetical protein ZEAMMB73_718708 [Zea mays]         59   7e-07
gb|AFW67930.1| hypothetical protein ZEAMMB73_718708 [Zea mays]         59   1e-06
ref|NP_001141960.1| uncharacterized protein LOC100274109 [Zea ma...    59   1e-06
ref|XP_002891901.1| hypothetical protein ARALYDRAFT_474728 [Arab...    58   2e-06

>gb|ABR16066.1| unknown [Picea sitchensis]
          Length = 460

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 50/115 (43%), Positives = 64/115 (55%), Gaps = 14/115 (12%)
 Frame = -3

Query: 320 KTSVVMLQVGLHGTARSVQKTLDQITEEADTSKREGLSPILT-----AYAHLD------* 174
           KTSV+ LQVGL G ARS+QK LDQI E A+TS  EGL+ +LT        H D       
Sbjct: 224 KTSVLKLQVGLLGLARSIQKDLDQIAETANTSTPEGLNYVLTETVLALLRHPDFCISGYS 283

Query: 173 S*GLVGNSTGTATPVP*GESSNNT---WAMFILVAETALALLRKPDYWISCFSSV 18
           S GL+G +      +     + NT     +  ++ ET LALLR PD+ IS +SSV
Sbjct: 284 SVGLLGLARSIQKDLDQIAETANTSTPEGLNYVLTETVLALLRHPDFCISGYSSV 338


>gb|AFW67928.1| hypothetical protein ZEAMMB73_718708 [Zea mays]
          Length = 370

 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 50/138 (36%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
 Frame = -3

Query: 416 GMIGAAVIVMSFVIGFIILPCVWEISGQNDPL----KTSVVMLQVGLHGTARSVQKTLDQ 249
           G  G  V +M F     +   + + SG    L    KT+V+ LQVGL G ARS QK LDQ
Sbjct: 167 GGSGFLVTLMGFAAFLYLAGFLSDSSGATSVLTETEKTTVLKLQVGLLGMARSFQKELDQ 226

Query: 248 ITEEADTSKREGLSPILTAYAHLD*S*GLVGNSTGTATPVP*GESSNNTWAMFILVAETA 69
           I E+ADTS   GLS +LT                                       ET 
Sbjct: 227 IAEKADTSTPAGLSYVLT---------------------------------------ETT 247

Query: 68  LALLRKPDYWISCFSSVS 15
           LALLR PD  IS +SS+S
Sbjct: 248 LALLRHPDCCISAYSSLS 265


>gb|AFW67930.1| hypothetical protein ZEAMMB73_718708 [Zea mays]
          Length = 292

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 50/137 (36%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
 Frame = -3

Query: 416 GMIGAAVIVMSFVIGFIILPCVWEISGQNDPL----KTSVVMLQVGLHGTARSVQKTLDQ 249
           G  G  V +M F     +   + + SG    L    KT+V+ LQVGL G ARS QK LDQ
Sbjct: 167 GGSGFLVTLMGFAAFLYLAGFLSDSSGATSVLTETEKTTVLKLQVGLLGMARSFQKELDQ 226

Query: 248 ITEEADTSKREGLSPILTAYAHLD*S*GLVGNSTGTATPVP*GESSNNTWAMFILVAETA 69
           I E+ADTS   GLS +LT                                       ET 
Sbjct: 227 IAEKADTSTPAGLSYVLT---------------------------------------ETT 247

Query: 68  LALLRKPDYWISCFSSV 18
           LALLR PD  IS +SSV
Sbjct: 248 LALLRHPDCCISAYSSV 264


>ref|NP_001141960.1| uncharacterized protein LOC100274109 [Zea mays]
           gi|194706592|gb|ACF87380.1| unknown [Zea mays]
           gi|413933378|gb|AFW67929.1| hypothetical protein
           ZEAMMB73_718708 [Zea mays]
          Length = 386

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 50/137 (36%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
 Frame = -3

Query: 416 GMIGAAVIVMSFVIGFIILPCVWEISGQNDPL----KTSVVMLQVGLHGTARSVQKTLDQ 249
           G  G  V +M F     +   + + SG    L    KT+V+ LQVGL G ARS QK LDQ
Sbjct: 167 GGSGFLVTLMGFAAFLYLAGFLSDSSGATSVLTETEKTTVLKLQVGLLGMARSFQKELDQ 226

Query: 248 ITEEADTSKREGLSPILTAYAHLD*S*GLVGNSTGTATPVP*GESSNNTWAMFILVAETA 69
           I E+ADTS   GLS +LT                                       ET 
Sbjct: 227 IAEKADTSTPAGLSYVLT---------------------------------------ETT 247

Query: 68  LALLRKPDYWISCFSSV 18
           LALLR PD  IS +SSV
Sbjct: 248 LALLRHPDCCISAYSSV 264


>ref|XP_002891901.1| hypothetical protein ARALYDRAFT_474728 [Arabidopsis lyrata subsp.
           lyrata] gi|297337743|gb|EFH68160.1| hypothetical protein
           ARALYDRAFT_474728 [Arabidopsis lyrata subsp. lyrata]
          Length = 389

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 39/104 (37%), Positives = 48/104 (46%)
 Frame = -3

Query: 329 DPLKTSVVMLQVGLHGTARSVQKTLDQITEEADTSKREGLSPILTAYAHLD*S*GLVGNS 150
           D  KTSV+ LQVGL G  R++Q+  +++ E ADTS  EGLS +LT               
Sbjct: 203 DTQKTSVIKLQVGLLGLGRTLQQDFNRLAESADTSTPEGLSYVLT--------------- 247

Query: 149 TGTATPVP*GESSNNTWAMFILVAETALALLRKPDYWISCFSSV 18
                                   E  LALLR PDY ISC+SSV
Sbjct: 248 ------------------------EATLALLRHPDYCISCYSSV 267


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