BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012928
         (356 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003574171.1| PREDICTED: U1 small nuclear ribonucleoprotei...    88   7e-23
dbj|BAE71300.1| putative U1 snRNP 70K protein [Trifolium pratense]     87   2e-22
gb|ABK96027.1| unknown [Populus trichocarpa]                           88   2e-22
ref|XP_002270129.1| PREDICTED: U1 small nuclear ribonucleoprotei...    89   6e-22
emb|CBI17535.3| unnamed protein product [Vitis vinifera]               89   6e-22

>ref|XP_003574171.1| PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like
           [Brachypodium distachyon]
          Length = 478

 Score = 87.8 bits (216), Expect(2) = 7e-23
 Identities = 39/46 (84%), Positives = 45/46 (97%)
 Frame = -2

Query: 355 MKSAYKQGDGRKLNDRRILVDVERGRTVPNWRPRRLGGGLGSTRIG 218
           MKSAYKQ DGRK++++R+LVDVERGRTVPNWRPRRLGGGLGS+RIG
Sbjct: 192 MKSAYKQADGRKVDNKRVLVDVERGRTVPNWRPRRLGGGLGSSRIG 237



 Score = 44.3 bits (103), Expect(2) = 7e-23
 Identities = 23/33 (69%), Positives = 24/33 (72%), Gaps = 5/33 (15%)
 Frame = -1

Query: 143 DRDREKSHERGRERD-----HERSHDRTRDCEP 60
           DRDREKS ER RERD      ERSHDRTRD +P
Sbjct: 270 DRDREKSRERVRERDRDERTRERSHDRTRDRDP 302


>dbj|BAE71300.1| putative U1 snRNP 70K protein [Trifolium pratense]
          Length = 506

 Score = 87.0 bits (214), Expect(2) = 2e-22
 Identities = 38/46 (82%), Positives = 43/46 (93%)
 Frame = -2

Query: 355 MKSAYKQGDGRKLNDRRILVDVERGRTVPNWRPRRLGGGLGSTRIG 218
           MK+AYKQ DGRK+  RR+LVDVERGRTVPNWRPRRLGGGLG+TR+G
Sbjct: 193 MKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVG 238



 Score = 43.9 bits (102), Expect(2) = 2e-22
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = -1

Query: 149 HVDRDREKSHERGRERDHERSHDRTRDCE 63
           HVDRDREKS ERG+ERD ER   R R  +
Sbjct: 269 HVDRDREKSRERGKERDRERERSRERSSD 297


>gb|ABK96027.1| unknown [Populus trichocarpa]
          Length = 313

 Score = 88.2 bits (217), Expect(2) = 2e-22
 Identities = 39/46 (84%), Positives = 44/46 (95%)
 Frame = -2

Query: 355 MKSAYKQGDGRKLNDRRILVDVERGRTVPNWRPRRLGGGLGSTRIG 218
           MK+AYKQ DGRKL+ RR+LVDVERGRTVPNWRPRRLGGGLG+TR+G
Sbjct: 24  MKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVG 69



 Score = 42.7 bits (99), Expect(2) = 2e-22
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = -1

Query: 218 RELRQLTSGGXXXXXXXXXXXXSHVDRDREKSHERGRERD--------HERSHDRTRD 69
           RE++Q  SGG             H +R+RE S +RGR+RD        HERSHDR RD
Sbjct: 80  REVQQ--SGGLSRSEEPRTREDRHTEREREVSRDRGRDRDKEREREKSHERSHDRPRD 135


>ref|XP_002270129.1| PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Vitis
           vinifera]
          Length = 514

 Score = 89.0 bits (219), Expect(2) = 6e-22
 Identities = 39/46 (84%), Positives = 45/46 (97%)
 Frame = -2

Query: 355 MKSAYKQGDGRKLNDRRILVDVERGRTVPNWRPRRLGGGLGSTRIG 218
           MK+AYKQ DGRKL++RR+LVDVERGRTVPNWRPRRLGGGLG+TR+G
Sbjct: 192 MKAAYKQADGRKLDNRRVLVDVERGRTVPNWRPRRLGGGLGTTRVG 237



 Score = 40.0 bits (92), Expect(2) = 6e-22
 Identities = 21/55 (38%), Positives = 25/55 (45%)
 Frame = -1

Query: 233 INQNWRELRQLTSGGXXXXXXXXXXXXSHVDRDREKSHERGRERDHERSHDRTRD 69
           +N  +    Q   GG             H DRDREKS ERGR+R+ ER   R  D
Sbjct: 241 VNPKYSGREQQPVGGPPRSEEPRTREDRHGDRDREKSRERGRDREREREKSREPD 295


>emb|CBI17535.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score = 89.0 bits (219), Expect(2) = 6e-22
 Identities = 39/46 (84%), Positives = 45/46 (97%)
 Frame = -2

Query: 355 MKSAYKQGDGRKLNDRRILVDVERGRTVPNWRPRRLGGGLGSTRIG 218
           MK+AYKQ DGRKL++RR+LVDVERGRTVPNWRPRRLGGGLG+TR+G
Sbjct: 192 MKAAYKQADGRKLDNRRVLVDVERGRTVPNWRPRRLGGGLGTTRVG 237



 Score = 40.0 bits (92), Expect(2) = 6e-22
 Identities = 21/55 (38%), Positives = 25/55 (45%)
 Frame = -1

Query: 233 INQNWRELRQLTSGGXXXXXXXXXXXXSHVDRDREKSHERGRERDHERSHDRTRD 69
           +N  +    Q   GG             H DRDREKS ERGR+R+ ER   R  D
Sbjct: 241 VNPKYSGREQQPVGGPPRSEEPRTREDRHGDRDREKSRERGRDREREREKSREPD 295