BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012829
         (1750 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   740   0.0  
ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|2...   702   0.0  
ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chlor...   696   0.0  
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [...   691   0.0  
ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chlor...   679   0.0  

>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
            gi|302144082|emb|CBI23187.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  740 bits (1911), Expect = 0.0
 Identities = 351/471 (74%), Positives = 409/471 (86%)
 Frame = +1

Query: 10   TSIFTNTFISSLCTSNCKTLSLPITLLRTLATSHFLTKQNKNFGKFSWGSSNRTFTSHAS 189
            TSIFT+  +SSL  SNC++   P+ L RTLA+S+  ++++K   +  W S+N T T   +
Sbjct: 7    TSIFTSGLVSSLWNSNCRSFGTPVALARTLASSNVFSRRHK---RVVWCSNNPTCTRELT 63

Query: 190  SKAEIGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLPPLF 369
            + ++   + ++S+ +GYPEY RLLPCP +NGPPR+EHLVVSEGG VLD+I K+LDLPPLF
Sbjct: 64   ASSD---SANTSSVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLPPLF 120

Query: 370  VADLIHFGAVYYALVCPKPPPSATPEQIRLFKEVTSPSVLKKRLSVKGKTVREAQKTFRI 549
            VADLIHFGAVYYALVCP+PPPSATPEQ+RLFKEVT+PSVL+KR S+KGKT+REAQKTFRI
Sbjct: 121  VADLIHFGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKTFRI 180

Query: 550  THVHEFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTDNIE 729
            T V+EFVEAGTY+RVHVHPKRFPR YEIDWKSRIIAV ESYVVLDKPAGTSVGGTTDNIE
Sbjct: 181  TDVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIE 240

Query: 730  ESCATFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYRALA 909
            ESCATFATRALGL  PL+TTHQIDNCT GCVVLARTKEYCSVFHGKIREK+VKKLYRALA
Sbjct: 241  ESCATFATRALGLTTPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRALA 300

Query: 910  AAPVPLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCVDDC 1089
            AAP+P+G +THYMRPVNIAPRL+S+DF +GW LCQL+VLECKEVPWP+  I+EKYC++D 
Sbjct: 301  AAPMPIGIVTHYMRPVNIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCIEDR 360

Query: 1090 GWPSKDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFGEHG 1269
            GWP K+ A++CKINLLTGRTHQIRAQ AA GAPIVGDSMYMPA IAE +SPGLNPFG++ 
Sbjct: 361  GWPLKNSAFKCKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFGKYK 420

Query: 1270 KLYPTEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWW 1422
            K Y TE D+  AV EW+A+HGKEP VAIGLQA QISWD+GEHFY+ G PWW
Sbjct: 421  KKYTTENDRETAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471


>ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|222847890|gb|EEE85437.1|
            predicted protein [Populus trichocarpa]
          Length = 470

 Score =  702 bits (1812), Expect = 0.0
 Identities = 334/464 (71%), Positives = 390/464 (84%)
 Frame = +1

Query: 34   ISSLCTSNCKTLSLPITLLRTLATSHFLTKQNKNFGKFSWGSSNRTFTSHASSKAEIGVT 213
            ++S+ + + ++ S P+TLLRTLA   F    + N     W S ++   S  S K +I  T
Sbjct: 6    LASIFSYSYRSFSAPVTLLRTLA---FTRAYSLNKKALVWCSLSKKKLSCESLKQDIACT 62

Query: 214  ISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLPPLFVADLIHFG 393
             ++S+ +GYPEY RLLPCP  N PPRIEHLVVSE GPVLD+ICK+LDLPPLFVADLIHFG
Sbjct: 63   TATSSVNGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKALDLPPLFVADLIHFG 122

Query: 394  AVYYALVCPKPPPSATPEQIRLFKEVTSPSVLKKRLSVKGKTVREAQKTFRITHVHEFVE 573
            AV+YALVCP+PP +ATPEQIR+F+EVT+PSVLKKR S+KGKTVREAQKTFRITHV +F+E
Sbjct: 123  AVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLE 182

Query: 574  AGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCATFAT 753
            AG Y+RVHVHPKRFPR Y+IDWKSRII V ES+VVLDKPAGTSVGGTTDNIEESCATFAT
Sbjct: 183  AGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFAT 242

Query: 754  RALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYRALAAAPVPLGT 933
            RALGL  PL+TTHQIDNCT GCVVLART+E CSVFHGKIREK VKKLY ALAA+PVP+G 
Sbjct: 243  RALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPIGV 302

Query: 934  ITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCVDDCGWPSKDVA 1113
            + HYMRP+N+APRLVS++F +GW+LCQL+V+ECK VPWP+  ++EKYCV DCGWPSKD A
Sbjct: 303  VNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSKDHA 362

Query: 1114 YECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFGEHGKLYPTEED 1293
            YECKINLLTGRTHQIRAQ AA GAP+VGDSMYMPA +AE  SPG NPFG++ K Y +E+D
Sbjct: 363  YECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTSEDD 422

Query: 1294 KANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 1425
            KA AVEEW+  HGKEP+VAIGLQA QISWD+G+H Y  G PWWR
Sbjct: 423  KAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWR 466


>ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  696 bits (1796), Expect = 0.0
 Identities = 330/472 (69%), Positives = 389/472 (82%), Gaps = 6/472 (1%)
 Frame = +1

Query: 28   TFISSLCTSNCKTLSLP-----ITLLRTLATSHFLTKQNKNFGKFSWGSSNRTFTSHAS- 189
            T  S L    C+ L++P     I + R   +SH   K   ++G  S  +SN      A  
Sbjct: 2    TVASMLFAGGCRILAVPAAARAIRIPRAALSSHH-NKHAPSWGCRSSHNSNTALAGEAEF 60

Query: 190  SKAEIGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLPPLF 369
            S  + G   ++S+ D +P+Y RLLPCP    PPRIEHLV+SEGGPVL+ ICK+LDLPPL+
Sbjct: 61   STTDAGNLTATSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLPPLY 120

Query: 370  VADLIHFGAVYYALVCPKPPPSATPEQIRLFKEVTSPSVLKKRLSVKGKTVREAQKTFRI 549
            V+DLI FGAVYYALVCP+PPP+AT EQIR+FKEVT PSVL+KR S+KGKTVREAQKTFR+
Sbjct: 121  VSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRV 180

Query: 550  THVHEFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTDNIE 729
            THV +FVE GTY+RVHVHPKRFPRSYEIDW+SRIIAVAESYVVLDKPAGTSVGGTTDNIE
Sbjct: 181  THVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIE 240

Query: 730  ESCATFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYRALA 909
            ESCATFATRALG+  PL TTHQIDNCT GCVVLARTK+YCS+FHGKIREK+VKKLY ALA
Sbjct: 241  ESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYLALA 300

Query: 910  AAPVPLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCVDDC 1089
            A+P+P G ITHYMRP+N+APRL+S+DF +GW+LCQL+VLEC+++PWP   IQ+KYCV+DC
Sbjct: 301  ASPLPTGIITHYMRPINMAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCVEDC 360

Query: 1090 GWPSKDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFGEHG 1269
            GWPS+D AYECKINLLTG+THQIRAQFAAY AP++GDSMYMPA IA+ S+PGLNPFG++ 
Sbjct: 361  GWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFGKYK 420

Query: 1270 KLYPTEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 1425
            K + +E +K  AV  WMA+HGKEPSVAIGLQA QISWD+ EHFYE G PWWR
Sbjct: 421  KDFSSESEKETAVVNWMAQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWR 472


>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 476

 Score =  691 bits (1783), Expect = 0.0
 Identities = 332/468 (70%), Positives = 389/468 (83%), Gaps = 4/468 (0%)
 Frame = +1

Query: 34   ISSLCTSNCKTLSLPITLLRTLATSH---FLTKQNKN-FGKFSWGSSNRTFTSHASSKAE 201
            ++S+     ++   P+T+LRTLA++H   F     KN   +FS  S  R F    SSK E
Sbjct: 6    LASIFAGGYRSFVTPVTVLRTLASTHAYSFHRHHPKNALARFSLNSHERKFCCE-SSKPE 64

Query: 202  IGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLPPLFVADL 381
            +  T ++S  +G  +Y RLLPCP  N PPRIEHLVV E GPVLD+ICK+LDLPPLFVADL
Sbjct: 65   VAYTTNTSCVNGNSDYDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICKALDLPPLFVADL 124

Query: 382  IHFGAVYYALVCPKPPPSATPEQIRLFKEVTSPSVLKKRLSVKGKTVREAQKTFRITHVH 561
            I FGAV+YALVCP+PP +ATPEQIRLF++ T+PSVLKKR S+KGKTVREAQKTFRITHV 
Sbjct: 125  IDFGAVHYALVCPRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVREAQKTFRITHVD 184

Query: 562  EFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCA 741
            +++EAGTY+RVHVHPKRFPR Y+IDWKSRIIAV + YVVLDKPAGTSVGGT DNIEESCA
Sbjct: 185  QYLEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADNIEESCA 244

Query: 742  TFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYRALAAAPV 921
            TFATRALGL  PLKTTHQIDNCT GCVVLAR+KEYCSVFHGKIREK+VKKLY ALAA+PV
Sbjct: 245  TFATRALGLTTPLKTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAASPV 304

Query: 922  PLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCVDDCGWPS 1101
            P+G I +YMRPVNIAPRL+S++F  GW+LCQL+VLEC++VPWP+  I+EKY V+DCGWPS
Sbjct: 305  PVGVIKNYMRPVNIAPRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVEDCGWPS 364

Query: 1102 KDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFGEHGKLYP 1281
            KD AYECKINLLTGRTHQIRAQ AA GAP+VGDSMYMPA +AE ++PGLNPFG+H K Y 
Sbjct: 365  KDFAYECKINLLTGRTHQIRAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGKHRKQYT 424

Query: 1282 TEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 1425
             E D++ AV EW+A+HGKEP VAIGLQA +ISWDEG+H Y+ G PWWR
Sbjct: 425  NESDESMAVAEWVAQHGKEPKVAIGLQACEISWDEGKHIYKAGSPWWR 472


>ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  679 bits (1752), Expect = 0.0
 Identities = 324/472 (68%), Positives = 384/472 (81%), Gaps = 6/472 (1%)
 Frame = +1

Query: 28   TFISSLCTSNCKTLSLPITLLRTLATSHFLTKQNKNFGKFSW--GSSNRTFTSHASSK-- 195
            T  S L + +C++L++P    R +  S      N+N    SW   SS+ + T+ A     
Sbjct: 2    TVASMLFSGSCRSLAMPAAA-RAVRISRAALVNNRNKHPPSWCCRSSHNSNTALAGEAEF 60

Query: 196  --AEIGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLPPLF 369
               + G+  ++S+ D + +Y RLLPCP    PPRIEHLVVSEGGPVL+ ICK+LDLPPL+
Sbjct: 61   LTTDAGILNATSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLPPLY 120

Query: 370  VADLIHFGAVYYALVCPKPPPSATPEQIRLFKEVTSPSVLKKRLSVKGKTVREAQKTFRI 549
            V+DLI FGAVYYALVCP+PPP+AT EQIR+FKEVT PSVL+KR S+KGKTVREAQKTFR+
Sbjct: 121  VSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRV 180

Query: 550  THVHEFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTDNIE 729
            THV +FVE GTY+RVHVHPKR PR YEIDW+SRII VAESYVVLDKPAGTSVGGTTDNIE
Sbjct: 181  THVDQFVEPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIE 240

Query: 730  ESCATFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYRALA 909
            ESCATFATRALG+  PL TTHQIDNCT GCVVLARTKEYCSVFHGKIREK+VKK Y ALA
Sbjct: 241  ESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALA 300

Query: 910  AAPVPLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCVDDC 1089
            A P+P G ITHYMRP+++APRL+S+DF +GW+LCQL+VLEC++VPWP   IQ+KYC++DC
Sbjct: 301  AFPLPTGIITHYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDC 360

Query: 1090 GWPSKDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFGEHG 1269
            GWPS+D AYECKINLLTG+THQIRAQFAAY AP++GDSMYMPA IA  S+PGLNPFG++ 
Sbjct: 361  GWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYK 420

Query: 1270 KLYPTEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 1425
            K + +E +K  AV  W+A+HGKEPSVAIGLQA QISWD+ EHFYE   PWWR
Sbjct: 421  KDFSSESEKETAVVNWIAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWR 472