BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012784
         (1698 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   519   e-145
ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|2...   508   e-141
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   506   e-141
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   483   e-134
emb|CBI31423.3| unnamed protein product [Vitis vinifera]              483   e-134

>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  519 bits (1337), Expect = e-145
 Identities = 269/388 (69%), Positives = 307/388 (79%), Gaps = 4/388 (1%)
 Frame = -1

Query: 1644 ATTLSSSLHVILKPSLIFKTKALPLLRSTI----TSKTDFNITFAXXXXXXXXXXXXXXP 1477
            A+   SS H + +PSL  +      +RS+I    T+  +FNI+FA               
Sbjct: 15   ASAAFSSFH-LSRPSLARRHFRTIPVRSSISPPSTTSAEFNISFAPKSKNPKPQ------ 67

Query: 1476 AVPLLIPWIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXXXXXXXXXXXXXPVLTSEPK 1297
            +  LLIPWIVR E+G L++QSTPP + L DMA A                    +  EPK
Sbjct: 68   SETLLIPWIVRDENGNLRVQSTPPERYLQDMAKAKALSAKKKKKKEESTARAVAV--EPK 125

Query: 1296 YSKAARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTRVDP 1117
            YSKAARRFYNENFRDPPQRLSKVLAAAGVASRR+SEELIF G+VTVNGSVCNTPQTRVDP
Sbjct: 126  YSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTRVDP 185

Query: 1116 GRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKETKSVMSLLDDYLKSWNRINPGT 937
             RD+IYVNGNR+ KKLPPKVYLALNKPKGYICSSGEKE+KSV+ L DDYLKSWN+ NPG 
Sbjct: 186  ARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQNPGV 245

Query: 936  PKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIAAVDGTVNKRHLTSISE 757
            PKPR+FTVGRLDVATTGLII+TNDGDFAQ++SHPSS LSKEYIA +DG VNKRHL +ISE
Sbjct: 246  PKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIAISE 305

Query: 756  GTIIEGVHCRPDSVELLPQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLMLHSLKRVRIG 577
            GT+IEGVHC PDSVELLP QP++S+PRLR+VVHEGRNHEVRELVK+AGL +HSLKR+RIG
Sbjct: 306  GTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRIRIG 365

Query: 576  GFRLPSDLGLGKHVELKQGDLKSLGGKT 493
            GFRLPSDLG GKHVELKQGDLK+LG K+
Sbjct: 366  GFRLPSDLGHGKHVELKQGDLKALGWKS 393


>ref|XP_002311995.1| predicted protein [Populus trichocarpa] gi|222851815|gb|EEE89362.1|
            predicted protein [Populus trichocarpa]
          Length = 397

 Score =  508 bits (1308), Expect = e-141
 Identities = 274/404 (67%), Positives = 299/404 (74%), Gaps = 9/404 (2%)
 Frame = -1

Query: 1680 SSSTLHTRQWNMATTLSSSLHVILKPSLIFKTKALPLLRSTITSKTDFNITFAXXXXXXX 1501
            S STLH         L   L    KPSL    K++   R  IT+  +FNITFA       
Sbjct: 4    SLSTLH---------LHHQLTFFRKPSLSLLNKSIRPTR--ITASLEFNITFAPPKPKPK 52

Query: 1500 XXXXXXXPAVPL-------LIPWIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXXXXXX 1342
                    A  L        IPWIVRGEDG LKLQS PP +L+H +A+A           
Sbjct: 53   LPANLQTDAASLSLPPGQLFIPWIVRGEDGNLKLQSNPPARLIHAIADAKTQPKKKKDKV 112

Query: 1341 XXXXXXXPV--LTSEPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGK 1168
                       L +EP  SKAARRFYNENFRD  QRLSKVLAAAGVASRRSSE LIF GK
Sbjct: 113  KKESSGNVKAKLEAEPTRSKAARRFYNENFRDQAQRLSKVLAAAGVASRRSSEALIFEGK 172

Query: 1167 VTVNGSVCNTPQTRVDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKETKSVM 988
            VTVNGSVCNTPQTRVDPGRD IYVNGNR+ KKLPPK+Y+ALNKPKGYICS GEKE+KSVM
Sbjct: 173  VTVNGSVCNTPQTRVDPGRDSIYVNGNRLPKKLPPKIYIALNKPKGYICSLGEKESKSVM 232

Query: 987  SLLDDYLKSWNRINPGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYI 808
             LLDDY +SW++ NPG PKPRLFTVGRLDVATTGLII+TNDGDFAQ+I+HPSS LSKEYI
Sbjct: 233  CLLDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQQIAHPSSNLSKEYI 292

Query: 807  AAVDGTVNKRHLTSISEGTIIEGVHCRPDSVELLPQQPDMSRPRLRIVVHEGRNHEVREL 628
            A VDG V+KRHL ++SEGT+IEGV C PDSVELLPQQPD  RPRLRIVVHEGRNHEVREL
Sbjct: 293  ATVDGVVSKRHLFAVSEGTVIEGVRCVPDSVELLPQQPDRPRPRLRIVVHEGRNHEVREL 352

Query: 627  VKNAGLMLHSLKRVRIGGFRLPSDLGLGKHVELKQGDLKSLGGK 496
            VKNAGL +HSLKRVRIGGFRLPSDLGLGKH ELKQ DLK+LG K
Sbjct: 353  VKNAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQTDLKTLGWK 396


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  506 bits (1302), Expect = e-141
 Identities = 267/404 (66%), Positives = 309/404 (76%), Gaps = 19/404 (4%)
 Frame = -1

Query: 1647 MATTLSSSLHVILKPSLIFKT-KALPLLRSTITSKT------------DFNITFAXXXXX 1507
            M +  SSSL ++ KPSLIF   +A+P +  +++S +            +FNITFA     
Sbjct: 1    MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60

Query: 1506 XXXXXXXXXPAVP------LLIPWIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXXXXX 1345
                       +       L IPWIVRGEDG LKLQS PPT+ LH ++            
Sbjct: 61   PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120

Query: 1344 XXXXXXXXPVLTSEPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKV 1165
                      +T  PK+SKAARRFYNEN R+  QRLSKVLAAAGVASRRSSEELIFGG+V
Sbjct: 121  AGKP------ITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRV 174

Query: 1164 TVNGSVCNTPQTRVDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKETKSVMS 985
            TVNGSVCNTPQTRVDP RDIIYVNGNR+ KKLPPKVYLALNKPKGYICSSG+KE+KSV+S
Sbjct: 175  TVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVIS 234

Query: 984  LLDDYLKSWNRINPGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIA 805
            L DDYLKSW++  PG PKPRLFTVGRLDVATTGLII+TNDGDFAQ ISHPSSGLSKEYIA
Sbjct: 235  LFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIA 294

Query: 804  AVDGTVNKRHLTSISEGTIIEGVHCRPDSVELLPQQPDMSRPRLRIVVHEGRNHEVRELV 625
            A+DGTV+K++L +ISEGTII+GVHC PDSVELLP+QPD+S+ RLRIVVHEGRNHEVRELV
Sbjct: 295  AIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELV 354

Query: 624  KNAGLMLHSLKRVRIGGFRLPSDLGLGKHVELKQGDLKSLGGKT 493
            K AGL ++SLKRVRIGGFRLPSDLGLG + ELKQ +LK++G K+
Sbjct: 355  KAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  483 bits (1243), Expect = e-134
 Identities = 257/397 (64%), Positives = 294/397 (74%), Gaps = 32/397 (8%)
 Frame = -1

Query: 1590 KTKALPL---------LRSTITSKT-----DFNITFAXXXXXXXXXXXXXXPAVP--LLI 1459
            K KA PL         LR +++S +     +F+I+FA               A P  L I
Sbjct: 18   KIKAFPLSPRFFPIRTLRCSVSSSSSSEPIEFDISFAPPKPKPSSTRGG---ATPQQLFI 74

Query: 1458 PWIVRGEDGQLKLQSTPPTQLLHDMANAXXXXXXXXXXXXXXXXXXPVLTS--------- 1306
            PWIVRG+DG LKLQS PP +L+H++A                       +S         
Sbjct: 75   PWIVRGDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKPKKKQPQATSSSASATASASS 134

Query: 1305 -------EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSV 1147
                   +PK SKAARRFYNENF++PPQRLSKVLAAAGVASRR+SEELIF GKVTVNG +
Sbjct: 135  PASHSEVKPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGIL 194

Query: 1146 CNTPQTRVDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKETKSVMSLLDDYL 967
            CNTPQTRVDP RDIIYVNGNRI KKLPPKVY ALNKPKGYICSSGEKE KSV+SL D+YL
Sbjct: 195  CNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISLFDEYL 254

Query: 966  KSWNRINPGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIAAVDGTV 787
             SW++ NPGTPKPRLFTVGRLDVATTGLI++TNDGDFAQ++SHPSS L KEYI  V G +
Sbjct: 255  SSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDI 314

Query: 786  NKRHLTSISEGTIIEGVHCRPDSVELLPQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLM 607
            +KRHL +ISEGTI+EGVHC PDSVEL+P+Q D+ R RLRIVVHEGRNHEVRELVKNAGL 
Sbjct: 315  HKRHLMAISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLE 374

Query: 606  LHSLKRVRIGGFRLPSDLGLGKHVELKQGDLKSLGGK 496
            +HSLKRVRIGGFRLPSDLGLGKHVELKQ +LK++G K
Sbjct: 375  VHSLKRVRIGGFRLPSDLGLGKHVELKQSELKAMGWK 411


>emb|CBI31423.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score =  483 bits (1242), Expect = e-134
 Identities = 232/271 (85%), Positives = 255/271 (94%)
 Frame = -1

Query: 1305 EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFGGKVTVNGSVCNTPQTR 1126
            EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRR+SEELIF G+VTVNGSVCNTPQTR
Sbjct: 26   EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTR 85

Query: 1125 VDPGRDIIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKETKSVMSLLDDYLKSWNRIN 946
            VDP RD+IYVNGNR+ KKLPPKVYLALNKPKGYICSSGEKE+KSV+ L DDYLKSWN+ N
Sbjct: 86   VDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQN 145

Query: 945  PGTPKPRLFTVGRLDVATTGLIIITNDGDFAQRISHPSSGLSKEYIAAVDGTVNKRHLTS 766
            PG PKPR+FTVGRLDVATTGLII+TNDGDFAQ++SHPSS LSKEYIA +DG VNKRHL +
Sbjct: 146  PGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIA 205

Query: 765  ISEGTIIEGVHCRPDSVELLPQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLMLHSLKRV 586
            ISEGT+IEGVHC PDSVELLP QP++S+PRLR+VVHEGRNHEVRELVK+AGL +HSLKR+
Sbjct: 206  ISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRI 265

Query: 585  RIGGFRLPSDLGLGKHVELKQGDLKSLGGKT 493
            RIGGFRLPSDLG GKHVELKQGDLK+LG K+
Sbjct: 266  RIGGFRLPSDLGHGKHVELKQGDLKALGWKS 296