BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012729
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containi...   104   6e-21
ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containi...   104   6e-21
ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containi...   101   7e-20
emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]   101   7e-20
ref|XP_002300388.1| predicted protein [Populus trichocarpa] gi|2...    92   6e-17

>ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  104 bits (260), Expect = 6e-21
 Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
 Frame = +2

Query: 50  FNIMPNTFTCSFVLKACSLLSHFSSGVIVHALVEKRGFQSDLFLQNTILHMYTCCGVTDV 229
           F+I P+ +TCSFVLKACS L    +G IVH  VEK G QS++FLQN I+H+Y  CG   V
Sbjct: 107 FDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGV 166

Query: 230 AKRFFDKWVKKML*LGIL*LPI*VSRMMIWS*LENCF--MKCLRSRSVRSWPAIVAGYVQ 403
           A++ FDK  ++     ++   I ++R++     E  +     +  R+VRSW +++ GY Q
Sbjct: 167 ARKVFDKMPQR----DVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQ 222

Query: 404 CGNLKEVIHMF 436
           CG  KE I +F
Sbjct: 223 CGKSKEAIDLF 233


>ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  104 bits (260), Expect = 6e-21
 Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
 Frame = +2

Query: 50  FNIMPNTFTCSFVLKACSLLSHFSSGVIVHALVEKRGFQSDLFLQNTILHMYTCCGVTDV 229
           F+I P+ +TCSFVLKACS L    +G IVH  VEK G QS++FLQN I+H+Y  CG   V
Sbjct: 107 FDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGV 166

Query: 230 AKRFFDKWVKKML*LGIL*LPI*VSRMMIWS*LENCF--MKCLRSRSVRSWPAIVAGYVQ 403
           A++ FDK  ++     ++   I ++R++     E  +     +  R+VRSW +++ GY Q
Sbjct: 167 ARKVFDKMPQR----DVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQ 222

Query: 404 CGNLKEVIHMF 436
           CG  KE I +F
Sbjct: 223 CGKSKEAIDLF 233


>ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  101 bits (251), Expect = 7e-20
 Identities = 52/131 (39%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
 Frame = +2

Query: 50  FNIMPNTFTCSFVLKACSLLSHFSSGVIVHALVEKRGFQSDLFLQNTILHMYTCCGVTDV 229
           +++ P+TFTCS VL+AC  L   S+G I+H +VEK GF+S+L+LQN I+H+Y  CG    
Sbjct: 122 YDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGE 181

Query: 230 AKRFFDKWVKKML*LGIL*LPI*VSRMMIWS*LENCF--MKCLRSRSVRSWPAIVAGYVQ 403
           A+  F+K  ++     ++   I +++++     E  +     +  R+VRSW +++AGYVQ
Sbjct: 182 ARLLFEKMPQR----DVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQ 237

Query: 404 CGNLKEVIHMF 436
           CG  KE IH+F
Sbjct: 238 CGKAKEAIHLF 248


>emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  101 bits (251), Expect = 7e-20
 Identities = 52/131 (39%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
 Frame = +2

Query: 50  FNIMPNTFTCSFVLKACSLLSHFSSGVIVHALVEKRGFQSDLFLQNTILHMYTCCGVTDV 229
           +++ P+TFTCS VL+AC  L   S+G I+H +VEK GF+S+L+LQN I+H+Y  CG    
Sbjct: 122 YDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGE 181

Query: 230 AKRFFDKWVKKML*LGIL*LPI*VSRMMIWS*LENCF--MKCLRSRSVRSWPAIVAGYVQ 403
           A+  F+K  ++     ++   I +++++     E  +     +  R+VRSW +++AGYVQ
Sbjct: 182 ARLLFEKMPQR----DVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQ 237

Query: 404 CGNLKEVIHMF 436
           CG  KE IH+F
Sbjct: 238 CGKAKEAIHLF 248


>ref|XP_002300388.1| predicted protein [Populus trichocarpa] gi|222847646|gb|EEE85193.1|
           predicted protein [Populus trichocarpa]
          Length = 514

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
 Frame = +2

Query: 50  FNIMPNTFTCSFVLKACSLLSHFSSGVIVHALVEKRGFQSDLFLQNTILHMYTCCGVTDV 229
           F+++P+TFTCSFVLKAC  LS   +G  +H L +K GF S+LFLQN IL++Y  CG    
Sbjct: 4   FDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGD 63

Query: 230 AKRFFDKWVKKML*LGIL*LPI*VSRMMIWS*LENCFMKCLR--SRSVRSWPAIVAGYVQ 403
           A   F+K  ++      +   I ++++     ++  +   LR  +++VRSW ++++G+VQ
Sbjct: 64  AMLLFEKMPQR----DAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQ 119

Query: 404 CGNLKEVIHMF 436
           CG   E I +F
Sbjct: 120 CGKPNEAIDLF 130