BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012725
         (248 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containi...   128   4e-28
ref|XP_002529628.1| pentatricopeptide repeat-containing protein,...   126   2e-27
ref|XP_002338705.1| predicted protein [Populus trichocarpa] gi|2...   124   6e-27
ref|NP_174603.1| pentatricopeptide repeat-containing protein [Ar...   120   9e-26
ref|XP_002891041.1| pentatricopeptide repeat-containing protein ...   119   3e-25

>ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  128 bits (322), Expect = 4e-28
 Identities = 61/82 (74%), Positives = 74/82 (90%)
 Frame = +3

Query: 3   SLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYSRLGEIGNAVLLFEQMPERDVP 182
           +L+D+YLR  S+V  AR LFDEM+ERNVV+WTAMISGY+RLG+IGNAVLLFE+MPERDVP
Sbjct: 195 ALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVP 254

Query: 183 SWNSVIAGCAQNGLFLEAISFF 248
           SWN++IAG  QNGLF+EA+S F
Sbjct: 255 SWNALIAGYTQNGLFMEALSLF 276


>ref|XP_002529628.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530913|gb|EEF32773.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 400

 Score =  126 bits (316), Expect = 2e-27
 Identities = 56/82 (68%), Positives = 72/82 (87%)
 Frame = +3

Query: 3   SLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYSRLGEIGNAVLLFEQMPERDVP 182
           +L+DSY R  S++  AR +FDEMSERNVV+WTAMI+GY+R+GE+GNA+ +F++MPERDVP
Sbjct: 144 ALVDSYSRFMSDIGCARQVFDEMSERNVVSWTAMITGYTRVGEVGNAISIFDKMPERDVP 203

Query: 183 SWNSVIAGCAQNGLFLEAISFF 248
           SWNS+IAGC QNGLF+EAI  F
Sbjct: 204 SWNSIIAGCTQNGLFIEAICLF 225


>ref|XP_002338705.1| predicted protein [Populus trichocarpa] gi|222873268|gb|EEF10399.1|
           predicted protein [Populus trichocarpa]
          Length = 263

 Score =  124 bits (312), Expect = 6e-27
 Identities = 58/82 (70%), Positives = 70/82 (85%)
 Frame = +3

Query: 3   SLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYSRLGEIGNAVLLFEQMPERDVP 182
           +LIDSY R   ++  AR +FDEMSERNVV+WTAMISGY+RLGEI NA+ LF++MPERDVP
Sbjct: 65  ALIDSYSRSGYDIGIARRMFDEMSERNVVSWTAMISGYTRLGEIENAITLFDEMPERDVP 124

Query: 183 SWNSVIAGCAQNGLFLEAISFF 248
           SWN+VI+GCAQNGLF  AI+ F
Sbjct: 125 SWNAVISGCAQNGLFTRAITIF 146


>ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g33350 gi|12322383|gb|AAG51215.1|AC051630_12 unknown
           protein; 15445-13829 [Arabidopsis thaliana]
           gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein,
           putative [Arabidopsis thaliana]
           gi|332193465|gb|AEE31586.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 538

 Score =  120 bits (302), Expect = 9e-26
 Identities = 55/82 (67%), Positives = 67/82 (81%)
 Frame = +3

Query: 3   SLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYSRLGEIGNAVLLFEQMPERDVP 182
           +L+ SY    S++  AR LFDEMSERNVV+WTAM+SGY+R G+I NAV LFE MPERDVP
Sbjct: 166 ALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVP 225

Query: 183 SWNSVIAGCAQNGLFLEAISFF 248
           SWN+++A C QNGLFLEA+S F
Sbjct: 226 SWNAILAACTQNGLFLEAVSLF 247


>ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336883|gb|EFH67300.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 586

 Score =  119 bits (298), Expect = 3e-25
 Identities = 54/82 (65%), Positives = 68/82 (82%)
 Frame = +3

Query: 3   SLIDSYLRCSSNVLFARALFDEMSERNVVTWTAMISGYSRLGEIGNAVLLFEQMPERDVP 182
           +L+ SY    S++  AR LFDEMSERNVV+WTAM+SGY+R G+I NAV LFE+MPERDVP
Sbjct: 166 ALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFEEMPERDVP 225

Query: 183 SWNSVIAGCAQNGLFLEAISFF 248
           SWN+++A C QNGLF+EA+S F
Sbjct: 226 SWNAILAACTQNGLFVEAVSLF 247