BLASTX nr result

ID: Coptis21_contig00012678 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012678
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280023.1| PREDICTED: mitochondrial substrate carrier f...   134   1e-29
emb|CAN59792.1| hypothetical protein VITISV_001900 [Vitis vinifera]   134   1e-29
ref|XP_004146612.1| PREDICTED: mitochondrial substrate carrier f...   132   2e-29
ref|XP_002329828.1| predicted protein [Populus trichocarpa] gi|2...   131   7e-29
gb|AFK48873.1| unknown [Medicago truncatula]                          125   4e-27

>ref|XP_002280023.1| PREDICTED: mitochondrial substrate carrier family protein S [Vitis
           vinifera] gi|297740410|emb|CBI30592.3| unnamed protein
           product [Vitis vinifera]
          Length = 303

 Score =  134 bits (336), Expect = 1e-29
 Identities = 62/78 (79%), Positives = 72/78 (92%)
 Frame = +1

Query: 112 SSAYKDYMAGLAAGVSTVIIGHPFDTVKVKLQKHNAEAHGIKYRNALHCTARILKNEGVR 291
           +S YK+Y+AGL AGV+TV IGHPFDTVKVKLQKHN EAHG+KY+N LHCTARI+K+EGV+
Sbjct: 4   TSGYKEYVAGLLAGVATVGIGHPFDTVKVKLQKHNTEAHGMKYKNGLHCTARIVKSEGVK 63

Query: 292 GLYRGASSSFFGMAFESS 345
           GLYRGA+SSF GMAFESS
Sbjct: 64  GLYRGATSSFLGMAFESS 81


>emb|CAN59792.1| hypothetical protein VITISV_001900 [Vitis vinifera]
          Length = 270

 Score =  134 bits (336), Expect = 1e-29
 Identities = 62/78 (79%), Positives = 72/78 (92%)
 Frame = +1

Query: 112 SSAYKDYMAGLAAGVSTVIIGHPFDTVKVKLQKHNAEAHGIKYRNALHCTARILKNEGVR 291
           +S YK+Y+AGL AGV+TV IGHPFDTVKVKLQKHN EAHG+KY+N LHCTARI+K+EGV+
Sbjct: 4   TSGYKEYVAGLLAGVATVGIGHPFDTVKVKLQKHNTEAHGMKYKNGLHCTARIVKSEGVK 63

Query: 292 GLYRGASSSFFGMAFESS 345
           GLYRGA+SSF GMAFESS
Sbjct: 64  GLYRGATSSFLGMAFESS 81


>ref|XP_004146612.1| PREDICTED: mitochondrial substrate carrier family protein S-like
           [Cucumis sativus] gi|449511666|ref|XP_004164021.1|
           PREDICTED: mitochondrial substrate carrier family
           protein S-like [Cucumis sativus]
          Length = 305

 Score =  132 bits (333), Expect = 2e-29
 Identities = 66/85 (77%), Positives = 72/85 (84%)
 Frame = +1

Query: 91  MGDESSSSSAYKDYMAGLAAGVSTVIIGHPFDTVKVKLQKHNAEAHGIKYRNALHCTARI 270
           MGD SS    YKDY+AGL AGV+TVIIGHPFDTVKVKLQKHN E+ GI YR  LHCTARI
Sbjct: 1   MGDTSS----YKDYVAGLIAGVATVIIGHPFDTVKVKLQKHNTESRGITYRGGLHCTARI 56

Query: 271 LKNEGVRGLYRGASSSFFGMAFESS 345
           LK EGVRGLYRGA+SSF G++FESS
Sbjct: 57  LKTEGVRGLYRGATSSFIGVSFESS 81


>ref|XP_002329828.1| predicted protein [Populus trichocarpa] gi|222870890|gb|EEF08021.1|
           predicted protein [Populus trichocarpa]
          Length = 302

 Score =  131 bits (329), Expect = 7e-29
 Identities = 61/76 (80%), Positives = 69/76 (90%)
 Frame = +1

Query: 118 AYKDYMAGLAAGVSTVIIGHPFDTVKVKLQKHNAEAHGIKYRNALHCTARILKNEGVRGL 297
           AYK+Y+AGL AGV+TVI GHPFDTVKV LQKHN EAHGIKY+N LHCTARIL+ EGV+GL
Sbjct: 6   AYKEYLAGLLAGVATVITGHPFDTVKVMLQKHNTEAHGIKYKNGLHCTARILQTEGVKGL 65

Query: 298 YRGASSSFFGMAFESS 345
           YRGA+SSF G+AFESS
Sbjct: 66  YRGATSSFVGVAFESS 81


>gb|AFK48873.1| unknown [Medicago truncatula]
          Length = 270

 Score =  125 bits (314), Expect = 4e-27
 Identities = 59/79 (74%), Positives = 66/79 (83%)
 Frame = +1

Query: 109 SSSAYKDYMAGLAAGVSTVIIGHPFDTVKVKLQKHNAEAHGIKYRNALHCTARILKNEGV 288
           SSS YKDY+AGL AGV+ V  GHPFDTVKVKLQ HN EAH ++YRN LHCTARILK EG+
Sbjct: 5   SSSGYKDYVAGLLAGVAAVATGHPFDTVKVKLQTHNTEAHLVQYRNGLHCTARILKTEGI 64

Query: 289 RGLYRGASSSFFGMAFESS 345
           +GLYRGA+SSF GMA E S
Sbjct: 65  KGLYRGATSSFAGMALEGS 83


Top