BLASTX nr result
ID: Coptis21_contig00012613
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00012613
(266 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containi... 119 2e-25
emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera] 119 3e-25
ref|XP_002526448.1| pentatricopeptide repeat-containing protein,... 118 6e-25
ref|XP_003631155.1| Pentatricopeptide repeat-containing protein ... 108 3e-22
ref|XP_002331135.1| predicted protein [Populus trichocarpa] gi|2... 106 2e-21
>ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 119 bits (299), Expect = 2e-25
Identities = 55/88 (62%), Positives = 73/88 (82%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
LRACAKLTD+SRGR++H Y +K G + D+++GN+LL+MY+K GV+DDAIR FD+M KD+
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDS 378
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNMQV 3
VS+SA++SGCVQNGN AL IF MQ+
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQL 406
Score = 60.5 bits (145), Expect = 1e-07
Identities = 31/87 (35%), Positives = 53/87 (60%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
L+AC+ L + G IH ++ GL D+ V +L+ Y+K G+L +A RLF M +D
Sbjct: 116 LKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNMQ 6
V+++A+I+GC G ++A+++ MQ
Sbjct: 176 VAWNAMIAGCSLYGLCDDAVQLIMQMQ 202
Score = 59.7 bits (143), Expect = 2e-07
Identities = 32/86 (37%), Positives = 51/86 (59%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
L AC+ L + G HGY + G D ++ N+L+ MYSK G + A +F++M D
Sbjct: 420 LPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDI 479
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNM 9
VS++A+I G +G G EAL +F+++
Sbjct: 480 VSWNAMIIGYGIHGLGMEALGLFHDL 505
Score = 55.5 bits (132), Expect = 5e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = -1
Query: 239 MSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDTVSYSAVISG 60
+ G+ +HGY V+ ++VG LL MY+K L A ++FD M +++ VS+SA+I G
Sbjct: 226 LGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGG 285
Query: 59 CVQNGNGEEALRIFNNM 9
V + +EAL +F+ M
Sbjct: 286 YVASDCMKEALELFDQM 302
>emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 119 bits (298), Expect = 3e-25
Identities = 55/88 (62%), Positives = 72/88 (81%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
LRACAKLTD+SRGR++H Y +K G + D+++GN+LL+MY+K GV+DDAIR FD M KD+
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDS 378
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNMQV 3
VS+SA++SGCVQNGN AL IF MQ+
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQL 406
Score = 60.5 bits (145), Expect = 1e-07
Identities = 31/87 (35%), Positives = 53/87 (60%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
L+AC+ L + G IH ++ GL D+ V +L+ Y+K G+L +A RLF M +D
Sbjct: 116 LKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNMQ 6
V+++A+I+GC G ++A+++ MQ
Sbjct: 176 VAWNAMIAGCSLYGLCDDAVQLIMQMQ 202
Score = 59.7 bits (143), Expect = 2e-07
Identities = 32/86 (37%), Positives = 51/86 (59%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
L AC+ L + G HGY + G D ++ N+L+ MYSK G + A +F++M D
Sbjct: 420 LPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDI 479
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNM 9
VS++A+I G +G G EAL +F+++
Sbjct: 480 VSWNAMIIGYGIHGLGMEALGLFHDL 505
Score = 55.5 bits (132), Expect = 5e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = -1
Query: 239 MSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDTVSYSAVISG 60
+ G+ +HGY V+ ++VG LL MY+K L A ++FD M +++ VS+SA+I G
Sbjct: 226 LGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGG 285
Query: 59 CVQNGNGEEALRIFNNM 9
V + +EAL +F+ M
Sbjct: 286 YVXSDCMKEALELFDQM 302
>ref|XP_002526448.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223534228|gb|EEF35943.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 557
Score = 118 bits (295), Expect = 6e-25
Identities = 55/88 (62%), Positives = 74/88 (84%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
LRACA+LTD+SRGR IH Y++K+G I DLM+GN+LL+ Y+K G + DAIR F +M+LKD
Sbjct: 333 LRACAELTDVSRGRCIHCYTIKSGFISDLMLGNTLLSTYAKCGTVSDAIRYFHEMELKDE 392
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNMQV 3
VSYSA+ISGC+QNGN +EAL +F+ M++
Sbjct: 393 VSYSAIISGCMQNGNAKEALSMFHRMRL 420
Score = 65.1 bits (157), Expect = 6e-09
Identities = 33/86 (38%), Positives = 52/86 (60%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
L ACA L + G H Y++ G ++ + N+L+ MY+K G +D A +FD+M +D
Sbjct: 434 LPACAHLAALQHGSCCHSYALIKGFTSEITICNALIDMYAKCGRIDTARNVFDRMHKRDI 493
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNM 9
VS++A+I +G G EAL +F+NM
Sbjct: 494 VSWNAMIIAYGNHGLGMEALLLFDNM 519
>ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 785
Score = 108 bits (271), Expect = 3e-22
Identities = 50/87 (57%), Positives = 69/87 (79%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
LRACA+LTD+ RG+++H + +K+G+ D VGNSL++MY+K G++D+A+ D+M KDT
Sbjct: 319 LRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDT 378
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNMQ 6
VSYSA+ISGCVQNG E+AL IF MQ
Sbjct: 379 VSYSAIISGCVQNGYAEKALLIFRQMQ 405
Score = 59.3 bits (142), Expect = 3e-07
Identities = 30/87 (34%), Positives = 50/87 (57%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
L AC+ L + G HGY+V G D + N+++ MYSK G + + +FD+M+ +D
Sbjct: 420 LPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDI 479
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNMQ 6
+S++ +I G +G EAL +F +Q
Sbjct: 480 ISWNTMIIGYGIHGLCVEALSLFQELQ 506
>ref|XP_002331135.1| predicted protein [Populus trichocarpa] gi|222872863|gb|EEF09994.1|
predicted protein [Populus trichocarpa]
Length = 799
Score = 106 bits (265), Expect = 2e-21
Identities = 48/88 (54%), Positives = 70/88 (79%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
+R CA LTD+S G +H Y++K+G + DLMVGN+LL+MY+K G+++ A+R F++M L+D
Sbjct: 332 IRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDA 391
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNMQV 3
VS++A+ISG VQNGN EE LR+F MQ+
Sbjct: 392 VSFTAIISGYVQNGNSEEGLRMFLEMQL 419
Score = 63.2 bits (152), Expect = 2e-08
Identities = 34/87 (39%), Positives = 52/87 (59%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
L ACA L + G H Y++ G D M+ N+L+ MY+K G +D A ++FD+M +
Sbjct: 433 LPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGI 492
Query: 86 VSYSAVISGCVQNGNGEEALRIFNNMQ 6
VS++ +I +G G EAL +F+NMQ
Sbjct: 493 VSWNTMIIAYGIHGIGLEALLLFDNMQ 519
Score = 60.5 bits (145), Expect = 1e-07
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKLKDT 87
L+AC+ L + S GR IH + L ++ V +L+ Y+K G LDDA +FDKM +D
Sbjct: 126 LKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDV 185
Query: 86 VSYSAVISG-CVQNGNGEEALRIFNNMQ 6
V+++++ISG + G+ +E R+ MQ
Sbjct: 186 VAWNSMISGFSLHEGSYDEVARLLVQMQ 213
Score = 55.8 bits (133), Expect = 3e-06
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = -1
Query: 266 LRACAKLTDMSRGRRIHGYSVKTGLIEDLMVGNSLLAMYSKGGVLDDAIRLFDKMKL-KD 90
L A A++ + G+ IHG+ V+ G + D++VG +L +Y K +D A R+FD M + K+
Sbjct: 227 LPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKN 286
Query: 89 TVSYSAVISGCVQNGNGEEALRIF 18
V++SA++ V EAL +F
Sbjct: 287 EVTWSAMVGAYVVCDFMREALELF 310