BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012538
         (1670 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278976.2| PREDICTED: DNA repair protein recA homolog 2...   424   e-116
ref|XP_002533897.1| DNA repair protein reca, putative [Ricinus c...   399   e-109
ref|NP_187625.2| DNA repair protein recA-like 2 [Arabidopsis tha...   392   e-106
gb|AAF04410.1|AC010927_3 putative RecA protein [Arabidopsis thal...   390   e-106
ref|XP_002323326.1| predicted protein [Populus trichocarpa] gi|2...   389   e-105

>ref|XP_002278976.2| PREDICTED: DNA repair protein recA homolog 2, mitochondrial-like
            [Vitis vinifera] gi|296087050|emb|CBI33377.3| unnamed
            protein product [Vitis vinifera]
          Length = 398

 Score =  424 bits (1089), Expect = e-116
 Identities = 212/343 (61%), Positives = 276/343 (80%), Gaps = 3/343 (0%)
 Frame = -3

Query: 1668 EYEGDKLHDNEKALEKDTALRLAISKVASEFGRDSMLSLRRFFGLRYAPIVSTGSLKLDV 1489
            E E D+  ++ KA EKDTALRLAIS++A +FGR+SMLSL+RFF  R+AP++STGSLKLD+
Sbjct: 54   EIECDEYGNDVKAAEKDTALRLAISRLAGDFGRESMLSLQRFFVSRHAPVISTGSLKLDL 113

Query: 1488 ALGLGGLPKGRIVEIFGPESSGKTTLALHIIKEAQKHGGYCAFIDVENALDPSLAEAIGV 1309
            ALG+GGLPKGRIVEI+G E+SGKTTLALHIIKEAQK GGYCA++DVENA++PS AE++GV
Sbjct: 114  ALGIGGLPKGRIVEIYGQEASGKTTLALHIIKEAQKLGGYCAYLDVENAMNPSFAESMGV 173

Query: 1308 NTDRLLIARPNSAENLLSITNTLAKSGSVEVIVIDSVAALASQYELDVGIDGPYRGIQSR 1129
            N D LLI+ P+SAENLLS+ NTL KSGS++VIV+DSVAAL  Q+ELDV I G Y+ +QS+
Sbjct: 174  NVDNLLISPPDSAENLLSMVNTLTKSGSMDVIVVDSVAALVPQHELDVVIGGTYQDVQSQ 233

Query: 1128 LMTQAVRKISSSLCHSGTLLVFLNQVRSRPREGLGYA---TVTCGGNALEFYSAVRMKIF 958
            +M QA+RKI  SLC S TL++F+NQVRS  +   G+     VTCGGNAL FY+AVR+++ 
Sbjct: 234  IMAQALRKIHYSLCRSETLIIFVNQVRSSLKSSHGFGRLDEVTCGGNALRFYAAVRLRVM 293

Query: 957  RKGLIREEDEIAGLSVCVEVVKNKLAPAMKMADLDIIYGKGIPYEAEVLEMACKQGVIMK 778
            R GL+R ED++ GL VCV+VVKNKLA A K ADL I +G+GI +E+EVLE+AC+ GVI K
Sbjct: 294  RTGLLRTEDKVTGLGVCVQVVKNKLAHATKKADLGIQFGRGICFESEVLELACEHGVIWK 353

Query: 777  RDGGYCIEGQILENKNKAEKYLAENCEIRDKVVKIVRSQLFDK 649
                Y IEG+   NK +AE+Y+A+N  + +++V  +RS LF++
Sbjct: 354  EGSKYIIEGEAFNNKQEAEQYMAQNSGVLERIVSFLRSHLFER 396


>ref|XP_002533897.1| DNA repair protein reca, putative [Ricinus communis]
            gi|223526148|gb|EEF28487.1| DNA repair protein reca,
            putative [Ricinus communis]
          Length = 388

 Score =  399 bits (1026), Expect = e-109
 Identities = 206/341 (60%), Positives = 267/341 (78%), Gaps = 3/341 (0%)
 Frame = -3

Query: 1668 EYEGDKLHDNEKALEKDTALRLAISKVASEFGRDSMLSLRRFFGLRYAPIVSTGSLKLDV 1489
            ++E DKL D+ +A+EK   L LA+ +++ EF R+SMLSL RFF  R A ++STGSLKLD+
Sbjct: 49   DFECDKLIDDSEAMEKHNKLFLALKEISGEFCRESMLSLHRFFSSRQASVISTGSLKLDL 108

Query: 1488 ALGLGGLPKGRIVEIFGPESSGKTTLALHIIKEAQKHGGYCAFIDVENALDPSLAEAIGV 1309
            ALG+GGLPKGR+VEI+G E+SGKTTLALHIIKEAQK GGYCA++D ENALDPSL E++GV
Sbjct: 109  ALGIGGLPKGRMVEIYGQEASGKTTLALHIIKEAQKCGGYCAYLDAENALDPSLVESMGV 168

Query: 1308 NTDRLLIARPNSAENLLSITNTLAKSGSVEVIVIDSVAALASQYELDVGIDGPYRGIQSR 1129
            NT+ LLI+ P+SAENLLS+ +TL KSGSV+VIV+DSVAAL  Q ELD  + G     QSR
Sbjct: 169  NTENLLISPPDSAENLLSVVDTLTKSGSVDVIVVDSVAALVPQLELDTML-GSTEDRQSR 227

Query: 1128 LMTQAVRKISSSLCHSGTLLVFLNQVRSRPREGLGYATV---TCGGNALEFYSAVRMKIF 958
            +M+QAVRKI+ SL  S TL++FLNQVR+  + G G   V   TCGGNAL+FYSAVR+++ 
Sbjct: 228  IMSQAVRKINYSLSQSKTLIIFLNQVRANVKSGQGLGQVDEATCGGNALKFYSAVRLRMA 287

Query: 957  RKGLIREEDEIAGLSVCVEVVKNKLAPAMKMADLDIIYGKGIPYEAEVLEMACKQGVIMK 778
            RK L++ EDEI GL V V+VVKNKLAPAMK A+L I +G+G   E+EVLE+AC+ GVI +
Sbjct: 288  RKALLKTEDEITGLRVSVQVVKNKLAPAMKKAELGIQFGRGFCSESEVLELACEYGVIRQ 347

Query: 777  RDGGYCIEGQILENKNKAEKYLAENCEIRDKVVKIVRSQLF 655
                YCIE ++  NK+ AE+YLAEN ++ D++V+ +R+ LF
Sbjct: 348  EGSTYCIEEEVFSNKHAAEEYLAENYKVHDRIVRTLRTHLF 388


>ref|NP_187625.2| DNA repair protein recA-like 2 [Arabidopsis thaliana]
            gi|75158993|sp|Q8RY99.1|RECAM_ARATH RecName: Full=DNA
            repair protein recA homolog 2, mitochondrial; AltName:
            Full=Recombinase A homolog 2; Flags: Precursor
            gi|18996122|gb|AAL79768.1| RecA protein [Arabidopsis
            thaliana] gi|22531124|gb|AAM97066.1| putative RecA
            protein [Arabidopsis thaliana] gi|23198012|gb|AAN15533.1|
            putative RecA protein [Arabidopsis thaliana]
            gi|332641343|gb|AEE74864.1| DNA repair protein recA-like
            2 [Arabidopsis thaliana]
          Length = 389

 Score =  392 bits (1006), Expect = e-106
 Identities = 200/339 (58%), Positives = 264/339 (77%), Gaps = 3/339 (0%)
 Frame = -3

Query: 1662 EGDKLHDNEKALEKDTALRLAISKVASEFGRDSMLSLRRFFGLRYAPIVSTGSLKLDVAL 1483
            E D++ D+ K  EKDTAL LA+S+++ +F +DS LSL+RF+  R   ++STGSL LD+AL
Sbjct: 49   ELDEVPDDRKVAEKDTALHLALSQLSGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLAL 108

Query: 1482 GLGGLPKGRIVEIFGPESSGKTTLALHIIKEAQKHGGYCAFIDVENALDPSLAEAIGVNT 1303
            G+GGLPKGR+VE++G E+SGKTTLALHIIKEAQK GGYCA++D ENA+DPSLAE+IGVNT
Sbjct: 109  GVGGLPKGRMVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNT 168

Query: 1302 DRLLIARPNSAENLLSITNTLAKSGSVEVIVIDSVAALASQYELDVGIDGPYRGIQSRLM 1123
            + LLI+RP+SAE +L+I + L KSGSV+VIV+DSVAALA Q ELD  +   YR  QSR+M
Sbjct: 169  EELLISRPSSAEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIM 228

Query: 1122 TQAVRKISSSLCHSGTLLVFLNQVRSRPREGLGY---ATVTCGGNALEFYSAVRMKIFRK 952
            TQA+RKI  S+ +S TL+VFLNQVRS  +  + +     VTCGGNAL F++A+R+K+ R 
Sbjct: 229  TQALRKIHYSVGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRT 288

Query: 951  GLIREEDEIAGLSVCVEVVKNKLAPAMKMADLDIIYGKGIPYEAEVLEMACKQGVIMKRD 772
            GLI+  ++I+GL+VCV+VVKNKLAP  K ++L I +G G   E EVLE+AC+ GVI++  
Sbjct: 289  GLIKTANKISGLNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREG 348

Query: 771  GGYCIEGQILENKNKAEKYLAENCEIRDKVVKIVRSQLF 655
              Y IEG+++E K+ AEKYL EN E  D VV I+R+QLF
Sbjct: 349  TSYFIEGEVIEGKDAAEKYLVENKEALDTVVAILRNQLF 387


>gb|AAF04410.1|AC010927_3 putative RecA protein [Arabidopsis thaliana]
          Length = 389

 Score =  390 bits (1002), Expect = e-106
 Identities = 199/339 (58%), Positives = 263/339 (77%), Gaps = 3/339 (0%)
 Frame = -3

Query: 1662 EGDKLHDNEKALEKDTALRLAISKVASEFGRDSMLSLRRFFGLRYAPIVSTGSLKLDVAL 1483
            E D++ D+ K  EKDTAL LA+S+++ +F +DS LSL+RF+  R   ++STGSL LD+AL
Sbjct: 49   ELDEVPDDRKVAEKDTALHLALSQLSGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLAL 108

Query: 1482 GLGGLPKGRIVEIFGPESSGKTTLALHIIKEAQKHGGYCAFIDVENALDPSLAEAIGVNT 1303
            G+GGLPKGR+VE++G E+SGKTTLALHIIKEAQK GGYCA++D ENA+DPSLAE+IGVNT
Sbjct: 109  GVGGLPKGRMVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNT 168

Query: 1302 DRLLIARPNSAENLLSITNTLAKSGSVEVIVIDSVAALASQYELDVGIDGPYRGIQSRLM 1123
            + LLI+RP+SAE +L+I + L KSGSV+VIV+DSVAALA Q ELD  +   YR  QSR+M
Sbjct: 169  EELLISRPSSAEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIM 228

Query: 1122 TQAVRKISSSLCHSGTLLVFLNQVRSRPREGLGY---ATVTCGGNALEFYSAVRMKIFRK 952
            TQA+RKI  S+ +S TL+VFLNQVRS  +  + +     VTCGGNAL F++A+R+K+ R 
Sbjct: 229  TQALRKIHYSVGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRT 288

Query: 951  GLIREEDEIAGLSVCVEVVKNKLAPAMKMADLDIIYGKGIPYEAEVLEMACKQGVIMKRD 772
            GLI+  +++ GL+VCV+VVKNKLAP  K ++L I +G G   E EVLE+AC+ GVI++  
Sbjct: 289  GLIKTANKVYGLNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREG 348

Query: 771  GGYCIEGQILENKNKAEKYLAENCEIRDKVVKIVRSQLF 655
              Y IEG+++E K+ AEKYL EN E  D VV I+R+QLF
Sbjct: 349  TSYFIEGEVIEGKDAAEKYLVENKEALDTVVAILRNQLF 387


>ref|XP_002323326.1| predicted protein [Populus trichocarpa] gi|222867956|gb|EEF05087.1|
            predicted protein [Populus trichocarpa]
          Length = 323

 Score =  389 bits (999), Expect = e-105
 Identities = 195/324 (60%), Positives = 254/324 (78%)
 Frame = -3

Query: 1626 EKDTALRLAISKVASEFGRDSMLSLRRFFGLRYAPIVSTGSLKLDVALGLGGLPKGRIVE 1447
            +KD ALRLA++++A EFGR+SMLSL+RFF  R AP++STGSLKLD+ALG+GGLPKGR+VE
Sbjct: 1    QKDNALRLALTQLAGEFGRESMLSLQRFFNSRRAPVISTGSLKLDLALGIGGLPKGRMVE 60

Query: 1446 IFGPESSGKTTLALHIIKEAQKHGGYCAFIDVENALDPSLAEAIGVNTDRLLIARPNSAE 1267
            I+G E+SGKTTLALHIIKEAQK GGYCA++DVENA+DP L E++G+NT+ LLI+ P+ AE
Sbjct: 61   IYGKEASGKTTLALHIIKEAQKLGGYCAYLDVENAMDPLLPESMGINTENLLISHPDCAE 120

Query: 1266 NLLSITNTLAKSGSVEVIVIDSVAALASQYELDVGIDGPYRGIQSRLMTQAVRKISSSLC 1087
            NLLS+ +TL KSGSV+VIV+DSVAAL  Q E+D  + G +  IQSRLMTQA+RKI+ SLC
Sbjct: 121  NLLSVVDTLTKSGSVDVIVVDSVAALVPQREIDTAVGGTFEDIQSRLMTQALRKINYSLC 180

Query: 1086 HSGTLLVFLNQVRSRPREGLGYATVTCGGNALEFYSAVRMKIFRKGLIREEDEIAGLSVC 907
             S TL++FLNQVR   + G     VTCGGNAL+FYSAVR+++ R  L++ ED I GL VC
Sbjct: 181  QSQTLIIFLNQVRKSLKSGRA-EEVTCGGNALKFYSAVRLRMIRTRLLKTEDRITGLGVC 239

Query: 906  VEVVKNKLAPAMKMADLDIIYGKGIPYEAEVLEMACKQGVIMKRDGGYCIEGQILENKNK 727
             +VVKNKLAPAM  A+L+I +G+G   E+EVLE+AC+  +I K    Y I  ++  N+  
Sbjct: 240  AQVVKNKLAPAMTKAELEIQFGRGFCSESEVLELACEHSLIKKEGSSYVIGRKVFGNERV 299

Query: 726  AEKYLAENCEIRDKVVKIVRSQLF 655
            AE+YL EN  + D++V  +R +LF
Sbjct: 300  AEQYLMENEGVHDQIVAKLREKLF 323