BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012503
         (562 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_175120.1| AAA-type ATPase family protein [Arabidopsis tha...   121   9e-26
dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum...   120   2e-25
dbj|BAD93877.1| 26S proteasome AAA-ATPase subunit RPT4a [Arabido...   119   4e-25
ref|NP_199115.1| regulatory particle triple-A ATPase 4A [Arabido...   119   4e-25
ref|XP_004164914.1| PREDICTED: 26S protease regulatory subunit S...   117   1e-24

>ref|NP_175120.1| AAA-type ATPase family protein [Arabidopsis thaliana]
           gi|297846852|ref|XP_002891307.1| hypothetical protein
           ARALYDRAFT_891428 [Arabidopsis lyrata subsp. lyrata]
           gi|75336159|sp|Q9MAK9.1|PS10B_ARATH RecName: Full=26S
           protease regulatory subunit S10B homolog B; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT4b; AltName:
           Full=26S proteasome subunit S10B homolog B; AltName:
           Full=Regulatory particle triple-A ATPase subunit 4b
           gi|7767657|gb|AAF69154.1|AC007915_6 F27F5.8 [Arabidopsis
           thaliana] gi|17065266|gb|AAL32787.1| similar to 26S
           proteasome AAA-ATPase subunit RPT4a [Arabidopsis
           thaliana] gi|21387177|gb|AAM47992.1| 26S proteasome
           AAA-ATPase subunit RPT4a-like protein [Arabidopsis
           thaliana] gi|297337149|gb|EFH67566.1| hypothetical
           protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp.
           lyrata] gi|332193951|gb|AEE32072.1| AAA-type ATPase
           family protein [Arabidopsis thaliana]
          Length = 399

 Score =  121 bits (303), Expect = 9e-26
 Identities = 56/60 (93%), Positives = 60/60 (100%)
 Frame = +3

Query: 3   EILKIHAAGIAKHGEIDYEAVVKLGEGFNGADMRNVCTEAGMFAIRAERDYVIHEDFMKA 182
           EILKIHA+GIAKHGEIDYEA+VKLGEGFNGAD+RN+CTEAGMFAIRAERDYVIHEDFMKA
Sbjct: 317 EILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKA 376


>dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum]
           gi|76160929|gb|ABA40428.1| 26S proteasome AAA-ATPase
           subunit RPT4a-like protein [Solanum tuberosum]
          Length = 398

 Score =  120 bits (300), Expect = 2e-25
 Identities = 57/60 (95%), Positives = 58/60 (96%)
 Frame = +3

Query: 3   EILKIHAAGIAKHGEIDYEAVVKLGEGFNGADMRNVCTEAGMFAIRAERDYVIHEDFMKA 182
           EILKIHAAGIAKHGEIDYEA +KL EGFNGADMRNVCTEAGMFAIRAERDYVIHEDFMKA
Sbjct: 316 EILKIHAAGIAKHGEIDYEAAIKLAEGFNGADMRNVCTEAGMFAIRAERDYVIHEDFMKA 375


>dbj|BAD93877.1| 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
          Length = 84

 Score =  119 bits (297), Expect = 4e-25
 Identities = 55/60 (91%), Positives = 59/60 (98%)
 Frame = +3

Query: 3   EILKIHAAGIAKHGEIDYEAVVKLGEGFNGADMRNVCTEAGMFAIRAERDYVIHEDFMKA 182
           +ILKIHAAGIAKHGEIDYEA+VKL EGFNGAD+RN+CTEAGMFAIRAERDYVIHEDFMKA
Sbjct: 2   DILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKA 61


>ref|NP_199115.1| regulatory particle triple-A ATPase 4A [Arabidopsis thaliana]
           gi|75337115|sp|Q9SEI3.1|PS10A_ARATH RecName: Full=26S
           protease regulatory subunit 10B homolog A; AltName:
           Full=26S proteasome AAA-ATPase subunit RPT4a; AltName:
           Full=26S proteasome subunit 10B homolog A; AltName:
           Full=Regulatory particle triple-A ATPase subunit 4a
           gi|6652884|gb|AAF22524.1|AF123393_1 26S proteasome
           AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
           gi|13937183|gb|AAK50085.1|AF372945_1 AT5g43010/MBD2_21
           [Arabidopsis thaliana] gi|9758590|dbj|BAB09203.1| 26S
           proteasome AAA-ATPase subunit RPT4a [Arabidopsis
           thaliana] gi|18700262|gb|AAL77741.1| AT5g43010/MBD2_21
           [Arabidopsis thaliana] gi|332007517|gb|AED94900.1|
           regulatory particle triple-A ATPase 4A [Arabidopsis
           thaliana]
          Length = 399

 Score =  119 bits (297), Expect = 4e-25
 Identities = 55/60 (91%), Positives = 59/60 (98%)
 Frame = +3

Query: 3   EILKIHAAGIAKHGEIDYEAVVKLGEGFNGADMRNVCTEAGMFAIRAERDYVIHEDFMKA 182
           +ILKIHAAGIAKHGEIDYEA+VKL EGFNGAD+RN+CTEAGMFAIRAERDYVIHEDFMKA
Sbjct: 317 DILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKA 376


>ref|XP_004164914.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
           [Cucumis sativus]
          Length = 398

 Score =  117 bits (294), Expect = 1e-24
 Identities = 57/60 (95%), Positives = 58/60 (96%)
 Frame = +3

Query: 3   EILKIHAAGIAKHGEIDYEAVVKLGEGFNGADMRNVCTEAGMFAIRAERDYVIHEDFMKA 182
           EILKIHAAGIAKHGEIDYEAVVKL EGFNGAD+RNVCTEAGM AIRAERDYVIHEDFMKA
Sbjct: 316 EILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 375