BLASTX nr result
ID: Coptis21_contig00012498
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00012498
(1326 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ... 167 7e-39
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 158 3e-36
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 157 4e-36
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin... 156 1e-35
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 154 4e-35
>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 398
Score = 167 bits (422), Expect = 7e-39
Identities = 116/378 (30%), Positives = 187/378 (49%), Gaps = 15/378 (3%)
Frame = -1
Query: 1272 WSSLPKELLELIALCLVTDVTDYVRFGVVCKLWRSVFVAIKPPRKLPPQIPWLLINDENL 1093
WS LP EL+E+I+ L T +DY+ VC WR F K P LPPQ+PWL++
Sbjct: 5 WSQLPPELIEIISKGL-TIYSDYLYSRAVCHAWR--FSIPKTPNHLPPQLPWLMLPQSQS 61
Query: 1092 GT-----CFFSPSLNRRIWLKTPN-PHTHDCIGSNHGWLIMIGKSSPSMFLFNPLTEAKI 931
+ FFS S N+ +L P + GS+HGWL MI +P++ L NPLT AK+
Sbjct: 62 QSNQSRRAFFSLSTNKFHFLNLPEVSYRKRHCGSSHGWL-MILDDTPTILLINPLTRAKL 120
Query: 930 FLPPATEISWIVDYQPSRIDTEYAVELFEYPGGAVHDYTFIPSRQVTRSLKLRAELSSHP 751
LPP + ++ + S I EYA+ + + + RQ+ S + LSS P
Sbjct: 121 SLPPLSSFPNVISFNYSDIGREYALR------NLLGERVTVSLRQMRDSFIRKVVLSSSP 174
Query: 750 TLSSMEGDGCVVLLFGGLVRQFAFCTPGDNKWTTIVDNKETPNRSMITVCRDIRYHDGQF 571
++ + VV+ A+C GD W+ +V+N + C D+ + +G F
Sbjct: 175 ----LKDNNFVVIAILNQTDDLAYCRNGDKSWS-LVENARS-------FCEDVIFVNGMF 222
Query: 570 YVADRSSTVVVCDVGPPSPGTKQLATMNSYHQLYTEYARLVELSGELLFIIPRLRPFKYK 391
Y +++ +V+CD+ SP +++ M + Q + LV SG+ L ++ R +Y+
Sbjct: 223 YAVNKAGQIVICDISSDSP---RVSFMETPRQAGGDMQYLVN-SGDELLLVTRYLDLEYE 278
Query: 390 NSEYVMG---------FRIFKLGQDSKEWVEVKNIGDATLFVGPFNSLSILASNYPGLKR 238
M F +F+L + +W+ + +GD LF+G +SLS+ A+++ G
Sbjct: 279 FDHPDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDFSGCMG 338
Query: 237 NCIYFTDTSSDYICDIFD 184
NCIY+TD DY+ +D
Sbjct: 339 NCIYYTD---DYLDANYD 353
>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
Length = 389
Score = 158 bits (399), Expect = 3e-36
Identities = 120/377 (31%), Positives = 180/377 (47%), Gaps = 14/377 (3%)
Frame = -1
Query: 1272 WSSLPKELLELIALCLVTDVTDYVRFGVVCKLWRSVFVAIKPPRKLPPQIPWLLI---ND 1102
WS L ELL+ IA TDYVRF VC WR+ K P LP Q+PWL++
Sbjct: 4 WSQLHPELLDFIAKKFKI-YTDYVRFRAVCHNWRASVP--KTPHHLPTQLPWLMLPQSQP 60
Query: 1101 ENLGTCFFSPSLNRRIWLKTPNP-HTHDCIGSNHGWLIMIGKSSPSMFLFNPLTEAKIFL 925
+ FFS SLN+ +L+ P H GS+HGWL+++ ++ P +FL NPLT +K+ L
Sbjct: 61 HHTHRPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEA-PEIFLLNPLTRSKVHL 119
Query: 924 PPATEISWIVDYQPSRIDTEYAVELFEYPGGAVHDYTFIPSRQVTRSLK-LRAELSSHPT 748
PP + +V + + + EYA+ G V+ TRSLK +R
Sbjct: 120 PPLSTFPNVVRFNFADVGREYALRT---SSGDVY----------TRSLKKMRDSFIKKTI 166
Query: 747 LSSMEGDGC--VVLLFGGLVRQFAFCTPGDNKWTTIVDNKETPNRSMITVCRDIRYHDGQ 574
LSS +G + ++ A C D+ WT + D + + D+ +H G
Sbjct: 167 LSSSPANGSDFIAVVILNQTGDLALCRKSDDSWTFLEDAQ--------SYSEDVIFHRGL 218
Query: 573 FYVADRSSTVVVCDVGPPSPGTKQLATMNSYHQLYTEYARLVELSGELLFIIPRLRPFKY 394
FY ++ ++ VCDV SP +++ + Q + LVE SGE L ++ R Y
Sbjct: 219 FYAVNKYGSIAVCDVSGSSP---RVSIIEMPQQFGGDLQYLVE-SGEELLLVTRYLDLTY 274
Query: 393 KNSE-------YVMGFRIFKLGQDSKEWVEVKNIGDATLFVGPFNSLSILASNYPGLKRN 235
F++ +L + W V ++GD LF+G SLS+ + ++PG K N
Sbjct: 275 DVEXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGN 334
Query: 234 CIYFTDTSSDYICDIFD 184
CIY+TD DY D +D
Sbjct: 335 CIYYTD---DYSEDNYD 348
>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Length = 389
Score = 157 bits (398), Expect = 4e-36
Identities = 120/377 (31%), Positives = 180/377 (47%), Gaps = 14/377 (3%)
Frame = -1
Query: 1272 WSSLPKELLELIALCLVTDVTDYVRFGVVCKLWRSVFVAIKPPRKLPPQIPWLLI---ND 1102
WS L ELL+ IA TDYVRF VC WR+ K P LP Q+PWL++
Sbjct: 4 WSQLHPELLDFIAKKFKI-YTDYVRFRAVCHNWRASVP--KTPHHLPTQLPWLMLPQSQP 60
Query: 1101 ENLGTCFFSPSLNRRIWLKTPNP-HTHDCIGSNHGWLIMIGKSSPSMFLFNPLTEAKIFL 925
+ FFS SLN+ +L+ P H GS+HGWL+++ ++ P +FL NPLT +K+ L
Sbjct: 61 HHTHRPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEA-PEIFLLNPLTRSKVHL 119
Query: 924 PPATEISWIVDYQPSRIDTEYAVELFEYPGGAVHDYTFIPSRQVTRSLK-LRAELSSHPT 748
PP + +V + + + EYA+ G V+ TRSLK +R
Sbjct: 120 PPLSTFPNVVRFNFADVGREYALRT---SSGDVY----------TRSLKKMRDSFIKKTI 166
Query: 747 LSSMEGDGC--VVLLFGGLVRQFAFCTPGDNKWTTIVDNKETPNRSMITVCRDIRYHDGQ 574
LSS +G + ++ A C D+ WT + D + + D+ +H G
Sbjct: 167 LSSSPANGSDFIAVVILNQTGDLALCRKSDDSWTFLEDAQ--------SYAEDVIFHRGL 218
Query: 573 FYVADRSSTVVVCDVGPPSPGTKQLATMNSYHQLYTEYARLVELSGELLFIIPRLRPFKY 394
FY ++ ++ VCDV SP +++ + Q + LVE SGE L ++ R Y
Sbjct: 219 FYAVNKYGSIAVCDVSGSSP---RVSIIEMPQQFGGDLQYLVE-SGEELLLVTRYLDLTY 274
Query: 393 KNSE-------YVMGFRIFKLGQDSKEWVEVKNIGDATLFVGPFNSLSILASNYPGLKRN 235
F++ +L + W V ++GD LF+G SLS+ + ++PG K N
Sbjct: 275 DVEPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGN 334
Query: 234 CIYFTDTSSDYICDIFD 184
CIY+TD DY D +D
Sbjct: 335 CIYYTD---DYSEDNYD 348
>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
Length = 393
Score = 156 bits (395), Expect = 1e-35
Identities = 118/367 (32%), Positives = 174/367 (47%), Gaps = 11/367 (2%)
Frame = -1
Query: 1272 WSSLPKELLELIALCLVTDVTDYVRFGVVCKLWRSVFVAIKPPRKLPPQIPWLLINDENL 1093
W LP ELLE I+ L T DY+RF VC+ WRS I P LPPQ+PWL+++
Sbjct: 5 WGELPPELLESISKTL-TIYVDYLRFRSVCRSWRSSVPKI--PLHLPPQLPWLMLSRR-- 59
Query: 1092 GTCFFSPSLNRRIWLKTPNPHTHDCIGSNHGWLIMIGKSSPSMFLFNPLTEAKIFLPPAT 913
FF SLN+ L H GS+HGWL+M+ ++ P + L NPLT A LPP
Sbjct: 60 --AFFDLSLNKTHLLNPQPSHRTRICGSSHGWLVMLDET-PQIRLLNPLTRATRPLPPLH 116
Query: 912 EISWIVDYQPSRIDTEYAVELFEYPGGAVHDYTFIPSRQVTRSLKLRAELSSHPTLSSME 733
+V + + + EY L + P G ++ + RQ+ S + LS+ PTL+
Sbjct: 117 AFPNVVAFDHANVGREY---LIQNPYGGLYAFNL---RQMCNSFLGKVVLSASPTLND-- 168
Query: 732 GDGCVVLLFGGLVRQFAFCTPGDNKWTTIVDNKETPNRSMITVCRDIRYHDGQFYVADRS 553
D + + G AFC G + W + +E N D+ ++G F+ +
Sbjct: 169 -DFAALAIVGQ--NNLAFCRNGYDSWIFLNGEEEEMN-----CWEDVVNYNGLFFAVSKG 220
Query: 552 STVVVCDVG----PPSPGTKQLATMNSYHQLYTEYARLVELSGELLFIIPRL----RPFK 397
T+ VCD G PP Q T + + V +G++L +I L
Sbjct: 221 GTIAVCDAGEGCFPPRVSIIQTTTPFGFAG---DIHYAVFSAGDMLLLIRVLDQDFSDHA 277
Query: 396 YKNSEYV---MGFRIFKLGQDSKEWVEVKNIGDATLFVGPFNSLSILASNYPGLKRNCIY 226
+ S+ V +GF +FK+ W V+ +G+ LFVG +SLS AS++ G +CIY
Sbjct: 278 GEESDLVYRTVGFEVFKMNWGLLTWQRVETLGERVLFVGGNSSLSFCASDFVGCSADCIY 337
Query: 225 FTDTSSD 205
FTD S+
Sbjct: 338 FTDDYSE 344
>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
predicted protein [Populus trichocarpa]
Length = 393
Score = 154 bits (390), Expect = 4e-35
Identities = 117/375 (31%), Positives = 182/375 (48%), Gaps = 12/375 (3%)
Frame = -1
Query: 1272 WSSLPKELLELIALCLVTDVTDYVRFGVVCKLWRSVFVAIKPPRKLPPQIPWLLI----N 1105
W+ LP EL+E+I+ +T +DY+ F VC W+S K P LPPQ+PWLL+ +
Sbjct: 5 WTQLPPELIEIISK-KITIYSDYLHFQAVCHAWKSSIP--KTPNHLPPQLPWLLLPQSQS 61
Query: 1104 DENLGTCFFSPSLNRRIWLKTPNP-HTHDCIGSNHGWLIMIGKSSPSMFLFNPLTEAKIF 928
+++ FF+ S + L P H GS+HGWLI++ SPS+ + NPLT KI
Sbjct: 62 NQSSYRAFFNLSTYKFHSLNLPEASHRKKHCGSSHGWLIILD-DSPSILVINPLTRRKIH 120
Query: 927 LPPATEISWIVDYQPSRIDTEYAVELFEYPGGAVHDYTFIPSRQVTRSLKLRAELSSHPT 748
LP + +V + + + EY L P G + + RQ+ + +SS P
Sbjct: 121 LPAISSFPNVVSFDYANVGREY---LLVNPQGERNTASL---RQMRDGFIKKVVMSSSPL 174
Query: 747 LSSMEGDGCVVLLFGGLVRQFAFCTPGDNKWTTIVDNKETPNRSMITVCRDIRYHDGQFY 568
+GD V + A+C GD W IV+N + D+ Y +G FY
Sbjct: 175 --EKKGDFFVAMAILCSTGDLAYCKNGDECWN-IVENSRS-------FSEDVIYFNGLFY 224
Query: 567 VADRSSTVVVCDVGPPSPGTKQLATMNSYHQLYTEYARLVELSGELLFIIPRLRP----- 403
+++ +VVCDV SP +++ + + Q+ + LV SG+ L ++ R
Sbjct: 225 AVNKAGQIVVCDVNGNSP---KVSFIETPRQIGGDMQYLVS-SGDGLLLVTRYLDLDVEF 280
Query: 402 --FKYKNSEYVMGFRIFKLGQDSKEWVEVKNIGDATLFVGPFNSLSILASNYPGLKRNCI 229
F YK + F +FKL + W V ++GD LF+G +SL++ AS G +CI
Sbjct: 281 DIFIYKTAR----FEVFKLDLNGPRWERVTSLGDMMLFIGENSSLALSASGLSGCMGDCI 336
Query: 228 YFTDTSSDYICDIFD 184
Y+TD DY + +D
Sbjct: 337 YYTD---DYSANNYD 348