BLASTX nr result
ID: Coptis21_contig00012469
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00012469
(1147 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002332237.1| predicted protein [Populus trichocarpa] gi|2... 525 e-147
emb|CBI33742.3| unnamed protein product [Vitis vinifera] 523 e-146
ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containi... 523 e-146
emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera] 520 e-145
ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containi... 499 e-139
>ref|XP_002332237.1| predicted protein [Populus trichocarpa] gi|222831850|gb|EEE70327.1|
predicted protein [Populus trichocarpa]
Length = 444
Score = 525 bits (1352), Expect = e-147
Identities = 248/319 (77%), Positives = 286/319 (89%)
Frame = -1
Query: 1147 ARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLSLRLQPTDITFIGVLSACSH 968
ARLVF+ I +KDVVAWNSM+VGYAMHG SQDAL LF M + QPTDITFIGVL+ACSH
Sbjct: 126 ARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSH 185
Query: 967 AGLVVDGRHFFNSMKEAYGIEPKVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWG 788
AGLV +G FF SMK+ YGIEPKVEHYGCMV+LLGRAG+L+EAYELVK M++D DPVLWG
Sbjct: 186 AGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWG 245
Query: 787 TLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGNWDGVARMRTLMKDSG 608
TLL +CRLHGN+ALGE IAE+LV+ LANSGTY+LLSNIYAAAGNW+GVAR+RTLMK+SG
Sbjct: 246 TLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESG 305
Query: 607 IQKEPGCSSIEVHNKVHEFLVGDLKHPKSKDIYVMLEELYSRLKADGYTPQTDLVLHDIG 428
+KEPGCSSIEV+NKVHEFL GDL+HPKS++IY MLEE+ LK GYTPQTD+VLHD+
Sbjct: 306 FEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLE 365
Query: 427 ETEKEQSLGVHSEKLAIAFGLISTQPGTTIKIVKNLRVCSDCHTVTKLISKITGRKIVVR 248
+ +KE+SLGVHSEKLA+AFGLI+T+PGTTIKIVKNLRVC+DCH VTKLISKITGRK+V+R
Sbjct: 366 DAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMR 425
Query: 247 DRNRFHHFVDGSCSCGDYW 191
DRNRFHHFV+G CSCGDYW
Sbjct: 426 DRNRFHHFVNGLCSCGDYW 444
Score = 87.4 bits (215), Expect = 6e-15
Identities = 46/130 (35%), Positives = 76/130 (58%)
Frame = -1
Query: 1147 ARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLSLRLQPTDITFIGVLSACSH 968
AR++FDG++++D + WN MI GYA HG + L LF +ML+ +++P ++T + VLSAC
Sbjct: 25 ARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQ 84
Query: 967 AGLVVDGRHFFNSMKEAYGIEPKVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWG 788
G + GR + +S E GI V ++D+ + G L++A LV + D V W
Sbjct: 85 TGALETGR-WVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDA-RLVFERISNKDVVAWN 142
Query: 787 TLLASCRLHG 758
+++ +HG
Sbjct: 143 SMVVGYAMHG 152
>emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 523 bits (1347), Expect = e-146
Identities = 249/319 (78%), Positives = 281/319 (88%)
Frame = -1
Query: 1147 ARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLSLRLQPTDITFIGVLSACSH 968
ARLVFD I DKDVVAWNSMIVGYAMHG SQ+AL+LF M + L PT+ITFIG+LSAC H
Sbjct: 244 ARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGH 303
Query: 967 AGLVVDGRHFFNSMKEAYGIEPKVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWG 788
+G V +G FN MK+ YGIEPK+EHYGCMV+LLGRAG +++AYELVK M ++PDPVLWG
Sbjct: 304 SGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWG 363
Query: 787 TLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGNWDGVARMRTLMKDSG 608
TLL +CRLHG +ALGE I E LV+ LANSGTYILLSNIYAA GNWDGVAR+RT+MKDSG
Sbjct: 364 TLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSG 423
Query: 607 IQKEPGCSSIEVHNKVHEFLVGDLKHPKSKDIYVMLEELYSRLKADGYTPQTDLVLHDIG 428
++KEPGCSSIEV+NKVHEFL G L HPK K+IY+MLEE+ LK+ GYTPQTD+VLHDIG
Sbjct: 424 VKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIG 483
Query: 427 ETEKEQSLGVHSEKLAIAFGLISTQPGTTIKIVKNLRVCSDCHTVTKLISKITGRKIVVR 248
ETEKE+SL VHSEKLAIAFGLI+TQPGTTIKIVKNLRVC+DCH VTKLISKITGRKIVVR
Sbjct: 484 ETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVR 543
Query: 247 DRNRFHHFVDGSCSCGDYW 191
DRNRFHHFV+GSCSCGDYW
Sbjct: 544 DRNRFHHFVNGSCSCGDYW 562
Score = 89.0 bits (219), Expect = 2e-15
Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 7/180 (3%)
Frame = -1
Query: 1147 ARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLSLRLQPTDITFIGVLSACSH 968
AR++FDG++++D V WN MI GY +G +AL LF RML + +P ++T + VLSAC
Sbjct: 143 ARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQ 202
Query: 967 AGLVVDGRHFFNSMKEAYGIEPKVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWG 788
G + GR + +S E GI+ V +VD+ + G L++A LV D D V W
Sbjct: 203 LGALESGR-WVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWN 260
Query: 787 TLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGN-------WDGVARMR 629
+++ +HG + + + GL T I I +A G+ WD +M+
Sbjct: 261 SMIVGYAMHGFSQEALQLFKSMCRMGL--HPTNITFIGILSACGHSGWVTEGWDIFNKMK 318
>ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 523 bits (1347), Expect = e-146
Identities = 249/319 (78%), Positives = 281/319 (88%)
Frame = -1
Query: 1147 ARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLSLRLQPTDITFIGVLSACSH 968
ARLVFD I DKDVVAWNSMIVGYAMHG SQ+AL+LF M + L PT+ITFIG+LSAC H
Sbjct: 310 ARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGH 369
Query: 967 AGLVVDGRHFFNSMKEAYGIEPKVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWG 788
+G V +G FN MK+ YGIEPK+EHYGCMV+LLGRAG +++AYELVK M ++PDPVLWG
Sbjct: 370 SGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWG 429
Query: 787 TLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGNWDGVARMRTLMKDSG 608
TLL +CRLHG +ALGE I E LV+ LANSGTYILLSNIYAA GNWDGVAR+RT+MKDSG
Sbjct: 430 TLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSG 489
Query: 607 IQKEPGCSSIEVHNKVHEFLVGDLKHPKSKDIYVMLEELYSRLKADGYTPQTDLVLHDIG 428
++KEPGCSSIEV+NKVHEFL G L HPK K+IY+MLEE+ LK+ GYTPQTD+VLHDIG
Sbjct: 490 VKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIG 549
Query: 427 ETEKEQSLGVHSEKLAIAFGLISTQPGTTIKIVKNLRVCSDCHTVTKLISKITGRKIVVR 248
ETEKE+SL VHSEKLAIAFGLI+TQPGTTIKIVKNLRVC+DCH VTKLISKITGRKIVVR
Sbjct: 550 ETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVR 609
Query: 247 DRNRFHHFVDGSCSCGDYW 191
DRNRFHHFV+GSCSCGDYW
Sbjct: 610 DRNRFHHFVNGSCSCGDYW 628
Score = 89.0 bits (219), Expect = 2e-15
Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 7/180 (3%)
Frame = -1
Query: 1147 ARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLSLRLQPTDITFIGVLSACSH 968
AR++FDG++++D V WN MI GY +G +AL LF RML + +P ++T + VLSAC
Sbjct: 209 ARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQ 268
Query: 967 AGLVVDGRHFFNSMKEAYGIEPKVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWG 788
G + GR + +S E GI+ V +VD+ + G L++A LV D D V W
Sbjct: 269 LGALESGR-WVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWN 326
Query: 787 TLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGN-------WDGVARMR 629
+++ +HG + + + GL T I I +A G+ WD +M+
Sbjct: 327 SMIVGYAMHGFSQEALQLFKSMCRMGL--HPTNITFIGILSACGHSGWVTEGWDIFNKMK 384
>emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 520 bits (1338), Expect = e-145
Identities = 248/319 (77%), Positives = 280/319 (87%)
Frame = -1
Query: 1147 ARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLSLRLQPTDITFIGVLSACSH 968
ARLVFD I DKDVVAWNSMIVGYAM G SQ+AL+LF M + L PT+ITFIG+LSAC H
Sbjct: 257 ARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGH 316
Query: 967 AGLVVDGRHFFNSMKEAYGIEPKVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWG 788
+G V +G FN MK+ YGIEPK+EHYGCMV+LLGRAG +++AYELVK M ++PDPVLWG
Sbjct: 317 SGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWG 376
Query: 787 TLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGNWDGVARMRTLMKDSG 608
TLL +CRLHG +ALGE I E LV+ LANSGTYILLSNIYAA GNWDGVAR+RT+MKDSG
Sbjct: 377 TLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSG 436
Query: 607 IQKEPGCSSIEVHNKVHEFLVGDLKHPKSKDIYVMLEELYSRLKADGYTPQTDLVLHDIG 428
++KEPGCSSIEV+NKVHEFL G L HPK K+IY+MLEE+ LK+ GYTPQTD+VLHDIG
Sbjct: 437 VKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIG 496
Query: 427 ETEKEQSLGVHSEKLAIAFGLISTQPGTTIKIVKNLRVCSDCHTVTKLISKITGRKIVVR 248
ETEKE+SL VHSEKLAIAFGLI+TQPGTTIKIVKNLRVC+DCH VTKLISKITGRKIVVR
Sbjct: 497 ETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVR 556
Query: 247 DRNRFHHFVDGSCSCGDYW 191
DRNRFHHFV+GSCSCGDYW
Sbjct: 557 DRNRFHHFVNGSCSCGDYW 575
Score = 85.5 bits (210), Expect = 2e-14
Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 7/180 (3%)
Frame = -1
Query: 1147 ARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLSLRLQPTDITFIGVLSACSH 968
AR++FDG++++D V WN MI GY +G +AL LF RML + +P ++T + VLSAC
Sbjct: 156 ARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQ 215
Query: 967 AGLVVDGRHFFNSMKEAYGIEPKVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWG 788
G + GR + +S E GI+ V +VD+ + G L++A LV D D V W
Sbjct: 216 LGALESGR-WVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWN 273
Query: 787 TLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGN-------WDGVARMR 629
+++ + G + + + GL T I I +A G+ WD +M+
Sbjct: 274 SMIVGYAMXGFSQEALQLFKSMCRMGL--HPTNITFIGILSACGHSGWVTEGWDIFNKMK 331
>ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 499 bits (1285), Expect = e-139
Identities = 241/319 (75%), Positives = 273/319 (85%)
Frame = -1
Query: 1147 ARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLSLRLQPTDITFIGVLSACSH 968
ARLVFD I+DKDVVAWNSMIVGYAMHG SQ AL+LF M +PTDITFIG+LSAC H
Sbjct: 327 ARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGH 386
Query: 967 AGLVVDGRHFFNSMKEAYGIEPKVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWG 788
GLV +GR FF M++ YGIEPK+EHYGCMV+LLGRAG L+EAY LVK M + DPVLWG
Sbjct: 387 GGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWG 446
Query: 787 TLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGNWDGVARMRTLMKDSG 608
TLL CRLH N+ LGE IA+FLV+ LANSGTY+LLSN+YAA GNW+GVA+MRTLMK+ G
Sbjct: 447 TLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHG 506
Query: 607 IQKEPGCSSIEVHNKVHEFLVGDLKHPKSKDIYVMLEELYSRLKADGYTPQTDLVLHDIG 428
I+KE GCSSIEV NKVHEF+ G+ KHPKSK+IYVML E+ S LKA GYTPQTD+VLHD+
Sbjct: 507 IEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLR 566
Query: 427 ETEKEQSLGVHSEKLAIAFGLISTQPGTTIKIVKNLRVCSDCHTVTKLISKITGRKIVVR 248
E +KEQSL VHSEKLAIAFGLIST+PGTT+KIVKNLRVCSDCHTV K+IS+ITGRKIV+R
Sbjct: 567 EEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMR 626
Query: 247 DRNRFHHFVDGSCSCGDYW 191
DRNRFHHF DG CSCGDYW
Sbjct: 627 DRNRFHHFEDGLCSCGDYW 645
Score = 91.3 bits (225), Expect = 4e-16
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 3/181 (1%)
Frame = -1
Query: 1147 ARLVFDGIKDKDVVAWNSMIVGYAMHGHSQDALELFSRMLSLRLQPTDITFIGVLSACSH 968
AR +F+G+K++DVV WN MI GYA G ++L+LF RML + P ++T + VLSAC
Sbjct: 226 ARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQ 285
Query: 967 AGLVVDGRHFFNSMKEAYGIEPKVEHYGCMVDLLGRAGFLDEAYELVKCMKMDPDPVLWG 788
G + GR + +S E GI+ V ++D+ + G L++A LV D D V W
Sbjct: 286 LGALESGR-WIHSYIENKGIQINVHVGTALIDMYSKCGSLEDA-RLVFDRIRDKDVVAWN 343
Query: 787 TLLASCRLHGNMALGEHIAEFLVNNGLANSGTYILLSNIYAAAGNWDGVARMRT---LMK 617
+++ +HG + E + G + T I I +A G+ V R+ LM+
Sbjct: 344 SMIVGYAMHGFSQHALQLFEEMTETG--HKPTDITFIGILSACGHGGLVEEGRSFFRLMR 401
Query: 616 D 614
D
Sbjct: 402 D 402