BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012446
         (1329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274498.1| PREDICTED: 50S ribosomal protein L1, chlorop...   432   e-119
emb|CBI24963.3| unnamed protein product [Vitis vinifera]              431   e-118
ref|XP_004149726.1| PREDICTED: 50S ribosomal protein L1, chlorop...   430   e-118
ref|XP_002298416.1| predicted protein [Populus trichocarpa] gi|2...   428   e-117
gb|ABK96759.1| unknown [Populus trichocarpa x Populus deltoides]      427   e-117

>ref|XP_002274498.1| PREDICTED: 50S ribosomal protein L1, chloroplastic [Vitis vinifera]
          Length = 347

 Score =  432 bits (1112), Expect = e-119
 Identities = 236/348 (67%), Positives = 268/348 (77%), Gaps = 8/348 (2%)
 Frame = +2

Query: 32   ASSSSALILTHRTPITVLPPEE---ASFCYKVKPFLFSSFK----ALSINQSRPRTSWPC 190
            A+S  +L+LT+    + LP ++    S  +K KP LF +F     AL   + RP      
Sbjct: 5    ATSPFSLMLTYAAS-SPLPTQDFIAPSLSFKTKP-LFRAFSLYPLALQARERRP------ 56

Query: 191  FFNRNNQLLFVTSAVSTQAQVXXXXXXXXXXXAP-VQXXXXXXXXXXXXXXXXXRDRTRS 367
              + N     V +A++ +A+V              V                  RDRTRS
Sbjct: 57   --SGNGPYDVVVAALAAEAEVAEAVEEVEGGEGDAVSTAPPPKPKKGKAALLLKRDRTRS 114

Query: 368  KRFLEIQKLRENKKEYDVPTALSLLKEMAKTKFVETAEAHFRLNIDPKYNDQQLRATVNL 547
            KRFLEIQKLRENKKEYD+ TA+SLLK+MA T+FVETAEAHFRLNIDPKYNDQQLRATVNL
Sbjct: 115  KRFLEIQKLRENKKEYDLQTAISLLKQMASTRFVETAEAHFRLNIDPKYNDQQLRATVNL 174

Query: 548  PKGTGQTVKVAVLTQGEKVDEAKSAGADLVGGDDLIAQIKGGVMDFDKLIASPDMMPKVA 727
            PKGTGQTVKVAVLTQGEK DEAK+AGADLVGG+DLI QIKGG MDFDKLIASPDMMPKVA
Sbjct: 175  PKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVA 234

Query: 728  SLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKLEYRADKTGIVHLPFGKADFSDEDL 907
            SLGK+LGPRGLMPNPKAGTVTT+IPQAIAEFKKGK+EYRADKTGIVHLPFGKADFS+EDL
Sbjct: 235  SLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKKGKVEYRADKTGIVHLPFGKADFSEEDL 294

Query: 908  IINLMAAVKSVDTNKPSGAKGVYWKSAHVCSSMGPSIRLNIREMLDFK 1051
            + NL+AAVKSV+TNKPSGAKGVYW+SAH+CSSMGPSIRLNIREMLD+K
Sbjct: 295  LANLIAAVKSVETNKPSGAKGVYWRSAHICSSMGPSIRLNIREMLDYK 342


>emb|CBI24963.3| unnamed protein product [Vitis vinifera]
          Length = 343

 Score =  431 bits (1108), Expect = e-118
 Identities = 212/234 (90%), Positives = 228/234 (97%)
 Frame = +2

Query: 350  RDRTRSKRFLEIQKLRENKKEYDVPTALSLLKEMAKTKFVETAEAHFRLNIDPKYNDQQL 529
            RDRTRSKRFLEIQKLRENKKEYD+ TA+SLLK+MA T+FVETAEAHFRLNIDPKYNDQQL
Sbjct: 105  RDRTRSKRFLEIQKLRENKKEYDLQTAISLLKQMASTRFVETAEAHFRLNIDPKYNDQQL 164

Query: 530  RATVNLPKGTGQTVKVAVLTQGEKVDEAKSAGADLVGGDDLIAQIKGGVMDFDKLIASPD 709
            RATVNLPKGTGQTVKVAVLTQGEK DEAK+AGADLVGG+DLI QIKGG MDFDKLIASPD
Sbjct: 165  RATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 224

Query: 710  MMPKVASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKLEYRADKTGIVHLPFGKAD 889
            MMPKVASLGK+LGPRGLMPNPKAGTVTT+IPQAIAEFKKGK+EYRADKTGIVHLPFGKAD
Sbjct: 225  MMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKKGKVEYRADKTGIVHLPFGKAD 284

Query: 890  FSDEDLIINLMAAVKSVDTNKPSGAKGVYWKSAHVCSSMGPSIRLNIREMLDFK 1051
            FS+EDL+ NL+AAVKSV+TNKPSGAKGVYW+SAH+CSSMGPSIRLNIREMLD+K
Sbjct: 285  FSEEDLLANLIAAVKSVETNKPSGAKGVYWRSAHICSSMGPSIRLNIREMLDYK 338


>ref|XP_004149726.1| PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis
            sativus] gi|449532743|ref|XP_004173340.1| PREDICTED: 50S
            ribosomal protein L1, chloroplastic-like [Cucumis
            sativus]
          Length = 356

 Score =  430 bits (1105), Expect = e-118
 Identities = 225/350 (64%), Positives = 266/350 (76%), Gaps = 7/350 (2%)
 Frame = +2

Query: 26   ACASSSSALILTHRTPITVLPPEE-----ASFCYKVKPFLFSSFKALS-INQSRPRTSWP 187
            AC S+  + ++      +V PP++      SF  K++     SF + + + +SR    W 
Sbjct: 3    ACTSTPPSSLMLTSASSSVHPPQDLASSLVSFKAKLQISTIKSFSSSNFLCRSRRSPDWV 62

Query: 188  CF-FNRNNQLLFVTSAVSTQAQVXXXXXXXXXXXAPVQXXXXXXXXXXXXXXXXXRDRTR 364
               F R  +   + +A + +A V           A                    RDR R
Sbjct: 63   FLNFQRRARQHVIVAAFAAEANVAEVEAEEEEGVAAAPTATAPKPKKGKAALPLKRDRRR 122

Query: 365  SKRFLEIQKLRENKKEYDVPTALSLLKEMAKTKFVETAEAHFRLNIDPKYNDQQLRATVN 544
            SKRFLEIQKLRENKKEYD+ TA+SLLKEM+ TKF+E+AEAHFRLNIDPKYNDQQLRATVN
Sbjct: 123  SKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFIESAEAHFRLNIDPKYNDQQLRATVN 182

Query: 545  LPKGTGQTVKVAVLTQGEKVDEAKSAGADLVGGDDLIAQIKGGVMDFDKLIASPDMMPKV 724
            LPKGTGQTVKVAVLTQGE+ DEAK+AGADLVGG+DLI QIKGG MDFDKLIASPDMMPKV
Sbjct: 183  LPKGTGQTVKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKV 242

Query: 725  ASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKLEYRADKTGIVHLPFGKADFSDED 904
            ASLGK+LGPRGLMPNPKAGTV T++PQAIAEFK+GK+EYRADKTGIVHLPFGKA+FS+ED
Sbjct: 243  ASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKANFSEED 302

Query: 905  LIINLMAAVKSVDTNKPSGAKGVYWKSAHVCSSMGPSIRLNIREMLDFKL 1054
            L+INL+AA+KS++TNKPSGAKGVYW+SAH+CSSMGPSIRLNIR+MLDFKL
Sbjct: 303  LLINLLAAIKSIETNKPSGAKGVYWRSAHICSSMGPSIRLNIRDMLDFKL 352


>ref|XP_002298416.1| predicted protein [Populus trichocarpa] gi|222845674|gb|EEE83221.1|
            predicted protein [Populus trichocarpa]
          Length = 355

 Score =  428 bits (1100), Expect = e-117
 Identities = 230/351 (65%), Positives = 264/351 (75%), Gaps = 8/351 (2%)
 Frame = +2

Query: 26   ACASSSSALILTHRTPITVLPPEEASFCYKVKPFLFSSFKALSINQSRPRTSWPCFFNRN 205
            AC S++S+L+LT+    TV P +        KP   S +  +S    R  ++W  F+ + 
Sbjct: 5    ACTSTTSSLMLTYAAS-TVHPQDLTPSLLSFKPKTLSLYPLVS---ERKSSNWVKFYAQT 60

Query: 206  NQL-----LFVTSAVSTQAQVXXXXXXXXXXXA---PVQXXXXXXXXXXXXXXXXXRDRT 361
                    + V +A++ +A+V                                   RDRT
Sbjct: 61   EAKSRPCRVVVAAALAAEAEVGEEVEETEGEEGGGVATATVIPPKPKKGKAALPLKRDRT 120

Query: 362  RSKRFLEIQKLRENKKEYDVPTALSLLKEMAKTKFVETAEAHFRLNIDPKYNDQQLRATV 541
            RSKRFLEIQKLRE KKEYD+  A+SLLK+ A TKFVE+AEAHFRLNIDPKYNDQQLRATV
Sbjct: 121  RSKRFLEIQKLREIKKEYDLGAAISLLKKTASTKFVESAEAHFRLNIDPKYNDQQLRATV 180

Query: 542  NLPKGTGQTVKVAVLTQGEKVDEAKSAGADLVGGDDLIAQIKGGVMDFDKLIASPDMMPK 721
            NLPKGTGQTVKVAVLTQGEK DEAK+AGADLVGG+DLI QIKGG M+FDKLIASPDMMPK
Sbjct: 181  NLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIQQIKGGYMEFDKLIASPDMMPK 240

Query: 722  VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKLEYRADKTGIVHLPFGKADFSDE 901
            VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGK+EYRADKTGIVH+PFGKADFS+E
Sbjct: 241  VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVHIPFGKADFSEE 300

Query: 902  DLIINLMAAVKSVDTNKPSGAKGVYWKSAHVCSSMGPSIRLNIREMLDFKL 1054
            DL++NL+AAVKSV+ NKPSGAKGVYWKSAH+CSSMGPSIRLN REMLD+KL
Sbjct: 301  DLLVNLLAAVKSVEANKPSGAKGVYWKSAHICSSMGPSIRLNTREMLDYKL 351


>gb|ABK96759.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 355

 Score =  427 bits (1099), Expect = e-117
 Identities = 229/351 (65%), Positives = 264/351 (75%), Gaps = 8/351 (2%)
 Frame = +2

Query: 26   ACASSSSALILTHRTPITVLPPEEASFCYKVKPFLFSSFKALSINQSRPRTSWPCFFNRN 205
            AC S++S+L+LT+    TV P +        KP   S +  +S    R  ++W  F+ + 
Sbjct: 5    ACTSTTSSLMLTYAAS-TVHPQDLTPSLLSFKPKTLSLYPLVS---ERKSSNWVKFYAQT 60

Query: 206  NQL-----LFVTSAVSTQAQVXXXXXXXXXXXA---PVQXXXXXXXXXXXXXXXXXRDRT 361
                    + V +A++ +A+V                                   RDRT
Sbjct: 61   EAKSRPCRVVVAAALAAEAEVGEEVEETEGEEGGGVATATVIPPKPKKGKAALPLKRDRT 120

Query: 362  RSKRFLEIQKLRENKKEYDVPTALSLLKEMAKTKFVETAEAHFRLNIDPKYNDQQLRATV 541
            RSKRFLEIQKLRE KKEYD+  A+SLLK+ A TKFVE+AEAHFRLNIDPKYNDQQLRATV
Sbjct: 121  RSKRFLEIQKLREIKKEYDLGAAISLLKKTASTKFVESAEAHFRLNIDPKYNDQQLRATV 180

Query: 542  NLPKGTGQTVKVAVLTQGEKVDEAKSAGADLVGGDDLIAQIKGGVMDFDKLIASPDMMPK 721
            NLPKGTGQT+KVAVLTQGEK DEAK+AGADLVGG+DLI QIKGG M+FDKLIASPDMMPK
Sbjct: 181  NLPKGTGQTIKVAVLTQGEKFDEAKNAGADLVGGEDLIQQIKGGYMEFDKLIASPDMMPK 240

Query: 722  VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKLEYRADKTGIVHLPFGKADFSDE 901
            VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGK+EYRADKTGIVH+PFGKADFS+E
Sbjct: 241  VASLGKILGPRGLMPNPKAGTVTTDIPQAIAEFKKGKVEYRADKTGIVHIPFGKADFSEE 300

Query: 902  DLIINLMAAVKSVDTNKPSGAKGVYWKSAHVCSSMGPSIRLNIREMLDFKL 1054
            DL++NL+AAVKSV+ NKPSGAKGVYWKSAH+CSSMGPSIRLN REMLD+KL
Sbjct: 301  DLLVNLLAAVKSVEANKPSGAKGVYWKSAHICSSMGPSIRLNTREMLDYKL 351