BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012277
         (365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]     56   3e-06

>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 1788

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 41/117 (35%), Positives = 55/117 (47%)
 Frame = -3

Query: 363 PGQALPNPKSNNTAFEANTGPTSDNLYQGELKAVTTLRSGKQIDNNVRIPDDNPPKVVNN 184
           P Q + NPK        +TG +S+N    +L A+ TLRSGKQIDN VR+P D  P  + N
Sbjct: 382 PSQPVANPK--------DTGSSSNN--PAQLNAIHTLRSGKQIDNQVRMPPDQTPSPIQN 431

Query: 183 TIVLDSKDQTDEPTPVDVPVKPKGNPANIMHKVNTTVDTSAKYRAKPPFPQQLAMNK 13
           T        +DE  P D          N   ++   +D   +YR   PFP +L   K
Sbjct: 432 T-------PSDETIPSD--------DQNAELEIEPDLD---RYRPVAPFPDRLKPRK 470