BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012264
         (548 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   143   2e-32
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   138   5e-31
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   136   2e-30
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]              117   2e-24
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...   117   2e-24

>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  143 bits (360), Expect = 2e-32
 Identities = 71/182 (39%), Positives = 106/182 (58%)
 Frame = +3

Query: 3   GFSKIFIKWVTAIISFAKVSVMVNGAPCGYFSVFRGVRQGDPLSPLLFALAEEVLSRGLT 182
           GF+++F  W+  I+  +K+ + +NGA  G+F+  RGVRQGDPLSPLLF + EEVLSR ++
Sbjct: 344 GFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSIS 403

Query: 183 RLRQWGLTKPMVSYKKHAGPSHLLFADDIIMFNSGHIHGLRITADLLMRYQEAAGQFVNK 362
            L   GL   + + + +  P H  + DD+++F    +  L +   L  RY + +GQ +N 
Sbjct: 404 ILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNI 463

Query: 363 QKSRLIMGGITLARRRAITQELGIEEGSLPEKYLGVPLFKGRVTRAGVCCLIDKIRGKMT 542
           +KS +  GGIT  R   I   LG   GSLP  YLG P+FKG+        + DK++ K+ 
Sbjct: 464 RKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLA 523

Query: 543 NW 548
            W
Sbjct: 524 KW 525


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  138 bits (348), Expect = 5e-31
 Identities = 69/162 (42%), Positives = 100/162 (61%)
 Frame = +3

Query: 3    GFSKIFIKWVTAIISFAKVSVMVNGAPCGYFSVFRGVRQGDPLSPLLFALAEEVLSRGLT 182
            GF + F+ W+  I+  A++SV+VNG   G+F+   GVRQGDPLSPLLF L EEVLSR L+
Sbjct: 609  GFDEKFVHWILVILQSARLSVLVNGKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLSRALS 668

Query: 183  RLRQWGLTKPMVSYKKHAGPSHLLFADDIIMFNSGHIHGLRITADLLMRYQEAAGQFVNK 362
                 G   PM   +  + P+H+L+ADD+++F +G    +R    +  +Y E +GQ +N 
Sbjct: 669  MAATDGQLIPMSYCRGVSFPTHILYADDVLIFCTGTKRNIRRLIKIFSQYSEVSGQLINN 728

Query: 363  QKSRLIMGGITLARRRAITQELGIEEGSLPEKYLGVPLFKGR 488
             KSR     +T +R + I+  LG   GSLP  YLG P+F+G+
Sbjct: 729  AKSRFFTSAMTGSRVQMISSLLGFNVGSLPFTYLGCPIFRGK 770


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  136 bits (342), Expect = 2e-30
 Identities = 75/182 (41%), Positives = 104/182 (57%)
 Frame = +3

Query: 3   GFSKIFIKWVTAIISFAKVSVMVNGAPCGYFSVFRGVRQGDPLSPLLFALAEEVLSRGLT 182
           GFS+ F  W+ AI+  AK+S+ +NG+  GYFS  RGVRQGDPLSPLLF LAE+VLSR LT
Sbjct: 283 GFSETFCNWIDAILQSAKLSICINGSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLSRSLT 342

Query: 183 RLRQWGLTKPMVSYKKHAGPSHLLFADDIIMFNSGHIHGLRITADLLMRYQEAAGQFVNK 362
           +L + G  K M   +    PSH+L+ADDI++F +                          
Sbjct: 343 KLVEQGKLKQMRGTRNCLVPSHILYADDIMIFCN-------------------------- 376

Query: 363 QKSRLIMGGITLARRRAITQELGIEEGSLPEKYLGVPLFKGRVTRAGVCCLIDKIRGKMT 542
                  GGI+ AR + +   +G  +GS P  YLGVP+FKG+     +  ++DKI+ K++
Sbjct: 377 -------GGISDARLQQLINVIGFNKGSFPFNYLGVPIFKGKPKARFLQPIVDKIKTKLS 429

Query: 543 NW 548
           NW
Sbjct: 430 NW 431


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score =  117 bits (292), Expect = 2e-24
 Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 2/180 (1%)
 Frame = +3

Query: 15   IFIKWVTAIISFAKVSVMVNGAPCGYFSVFRGVRQGDPLSPLLFALAEEVLSRGLTRLRQ 194
            +FI W+   IS A  S+  NG   G+F   +G+RQGDP+S  LF L  +VLS+ L     
Sbjct: 661  VFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGAL 720

Query: 195  WGLTKPMVSYKKHAGP--SHLLFADDIIMFNSGHIHGLRITADLLMRYQEAAGQFVNKQK 368
             GL      +     P  +HL FADD+++F+ G    +     +L  +++ +G  +N++K
Sbjct: 721  NGLFN---LHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILDDFRQGSGLGINREK 777

Query: 369  SRLIMGGITLARRRAITQELGIEEGSLPEKYLGVPLFKGRVTRAGVCCLIDKIRGKMTNW 548
            + L++ G   AR R++   LGI  GSLP +YLGVPL   ++ R     L+D+I  + T+W
Sbjct: 778  TELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSW 837


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score =  117 bits (292), Expect = 2e-24
 Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 2/180 (1%)
 Frame = +3

Query: 15   IFIKWVTAIISFAKVSVMVNGAPCGYFSVFRGVRQGDPLSPLLFALAEEVLSRGLTRLRQ 194
            +FI W+   IS A  S+  NG   G+F   +G+RQGDP+S  LF L  +VLS+ L     
Sbjct: 618  VFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGAL 677

Query: 195  WGLTKPMVSYKKHAGP--SHLLFADDIIMFNSGHIHGLRITADLLMRYQEAAGQFVNKQK 368
             GL      +     P  +HL FADD+++F+ G    +     +L  +++ +G  +N++K
Sbjct: 678  NGLFN---LHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILDDFRQGSGLGINREK 734

Query: 369  SRLIMGGITLARRRAITQELGIEEGSLPEKYLGVPLFKGRVTRAGVCCLIDKIRGKMTNW 548
            + L++ G   AR R++   LGI  GSLP +YLGVPL   ++ R     L+D+I  + T+W
Sbjct: 735  TELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSW 794