BLASTX nr result
ID: Coptis21_contig00012144
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00012144
(858 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACP41914.1| RNA polymerase IV, partial [Heliosperma macranthum] 105 9e-37
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode... 104 1e-36
gb|ACP41916.1| RNA polymerase IV, partial [Heliosperma veselskyi... 105 1e-36
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 106 1e-36
gb|ACP41915.1| RNA polymerase IV, partial [Heliosperma pusillum] 104 2e-36
>gb|ACP41914.1| RNA polymerase IV, partial [Heliosperma macranthum]
Length = 475
Score = 105 bits (262), Expect(2) = 9e-37
Identities = 56/101 (55%), Positives = 77/101 (76%), Gaps = 7/101 (6%)
Frame = -2
Query: 629 VVKYLKEIYLLKGG-YNIHSLMNEGVIELVGNEEDKDCQTA*GSKYLFSEKK-----VYL 468
VV+ L++I LLKG ++ +L+++G++EL+G EE++DC+TA KYLF+ +K Y
Sbjct: 94 VVENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYT 153
Query: 467 CCELDPSFLLGLSCGIIPFTNHDNARRALYQ-QKHSQQSIG 348
CELD SFLLG+SCGIIPF NHD+ARR LYQ +KHS Q+IG
Sbjct: 154 HCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIG 194
Score = 75.1 bits (183), Expect(2) = 9e-37
Identities = 38/64 (59%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = -3
Query: 361 SNQLAGFSTTNPKIRVDILSH*LYYPQ*PLSRTVISDCLGKH*YPLGKN-VHPMREI*NG 185
S Q G++TTNP IR+D LSH +YYPQ PL R+VI+D LGK +PLG+N + P E NG
Sbjct: 189 SGQAIGYATTNPNIRIDTLSHQMYYPQRPLFRSVIADSLGKAGHPLGRNQILPKAEFFNG 248
Query: 184 QNAI 173
QNAI
Sbjct: 249 QNAI 252
>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
macrophyllum]
Length = 1019
Score = 104 bits (260), Expect(2) = 1e-36
Identities = 57/101 (56%), Positives = 72/101 (71%), Gaps = 7/101 (6%)
Frame = -2
Query: 629 VVKYLKEIYLLKGG-YNIHSLMNEGVIELVGNEEDKDCQTA*GSKYLFSEKKV-----YL 468
VV+ L +I KGG Y+ SL+++GVIE +G EE++DC+TA G YLF E + Y
Sbjct: 472 VVENLGKIKASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYT 531
Query: 467 CCELDPSFLLGLSCGIIPFTNHDNARRALYQ-QKHSQQSIG 348
CELD SFLLGLS IIPF NHD+ARR LYQ +KHSQQ++G
Sbjct: 532 HCELDMSFLLGLSAAIIPFANHDHARRVLYQSEKHSQQAMG 572
Score = 75.5 bits (184), Expect(2) = 1e-36
Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = -3
Query: 361 SNQLAGFSTTNPKIRVDILSH*LYYPQ*PLSRTVISDCLGKH*YPLGKN-VHPMREI*NG 185
S Q GF+TTNP IRVD +H LYYPQ PL RT++SDCLGK YPLG N + P E NG
Sbjct: 567 SQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPRAEYFNG 626
Query: 184 QNAI 173
Q AI
Sbjct: 627 QCAI 630
>gb|ACP41916.1| RNA polymerase IV, partial [Heliosperma veselskyi subsp. veselskyi]
Length = 475
Score = 105 bits (261), Expect(2) = 1e-36
Identities = 56/101 (55%), Positives = 77/101 (76%), Gaps = 7/101 (6%)
Frame = -2
Query: 629 VVKYLKEIYLLKGG-YNIHSLMNEGVIELVGNEEDKDCQTA*GSKYLFSEKK-----VYL 468
VV+ L++I LLKG ++ +L+++G++EL+G EE++DC+TA KYLF+ +K Y
Sbjct: 94 VVENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYT 153
Query: 467 CCELDPSFLLGLSCGIIPFTNHDNARRALYQ-QKHSQQSIG 348
CELD SFLLG+SCGIIPF NHD+ARR LYQ +KHS Q+IG
Sbjct: 154 HCELDLSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIG 194
Score = 75.1 bits (183), Expect(2) = 1e-36
Identities = 38/64 (59%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = -3
Query: 361 SNQLAGFSTTNPKIRVDILSH*LYYPQ*PLSRTVISDCLGKH*YPLGKN-VHPMREI*NG 185
S Q G++TTNP IR+D LSH +YYPQ PL R+VI+D LGK +PLG+N + P E NG
Sbjct: 189 SGQAIGYATTNPNIRIDTLSHQMYYPQRPLFRSVIADSLGKAGHPLGRNQILPKAEFFNG 248
Query: 184 QNAI 173
QNAI
Sbjct: 249 QNAI 252
>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
subunit, putative [Ricinus communis]
Length = 1203
Score = 106 bits (265), Expect(2) = 1e-36
Identities = 59/101 (58%), Positives = 71/101 (70%), Gaps = 7/101 (6%)
Frame = -2
Query: 629 VVKYLKEIYLLKGGY-NIHSLMNEGVIELVGNEEDKDCQTA*GSKYLFS-----EKKVYL 468
VV+ L +I KGG SL+++G+IE VG EE++DC TA G K+L S + Y
Sbjct: 656 VVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYT 715
Query: 467 CCELDPSFLLGLSCGIIPFTNHDNARRALYQ-QKHSQQSIG 348
CELD SFLLGLSCGIIPF NHD+ARR LYQ QKHSQQ+IG
Sbjct: 716 HCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 756
Score = 73.2 bits (178), Expect(2) = 1e-36
Identities = 41/64 (64%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = -3
Query: 361 SNQLAGFSTTNPKIRVDILSH*LYYPQ*PLSRTVISDCLGKH*YPLGKN-VHPMREI*NG 185
S Q GF TTNP IRVD LSH LYYPQ PL RTV SDCLGK G N + P E+ NG
Sbjct: 751 SQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNG 810
Query: 184 QNAI 173
QNAI
Sbjct: 811 QNAI 814
>gb|ACP41915.1| RNA polymerase IV, partial [Heliosperma pusillum]
Length = 475
Score = 104 bits (259), Expect(2) = 2e-36
Identities = 56/101 (55%), Positives = 76/101 (75%), Gaps = 7/101 (6%)
Frame = -2
Query: 629 VVKYLKEIYLLKGG-YNIHSLMNEGVIELVGNEEDKDCQTA*GSKYLFSEKK-----VYL 468
VV+ L++I LLKG ++ +L+++G++EL+G EE++DC+TA KYLF+ K Y
Sbjct: 94 VVENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGDKGKGLEKYT 153
Query: 467 CCELDPSFLLGLSCGIIPFTNHDNARRALYQ-QKHSQQSIG 348
CELD SFLLG+SCGIIPF NHD+ARR LYQ +KHS Q+IG
Sbjct: 154 HCELDLSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIG 194
Score = 75.1 bits (183), Expect(2) = 2e-36
Identities = 38/64 (59%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = -3
Query: 361 SNQLAGFSTTNPKIRVDILSH*LYYPQ*PLSRTVISDCLGKH*YPLGKN-VHPMREI*NG 185
S Q G++TTNP IR+D LSH +YYPQ PL R+VI+D LGK +PLG+N + P E NG
Sbjct: 189 SGQAIGYATTNPNIRIDTLSHQMYYPQRPLFRSVIADSLGKAGHPLGRNQILPKAEFFNG 248
Query: 184 QNAI 173
QNAI
Sbjct: 249 QNAI 252