BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012102
         (520 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containi...   145   4e-33
emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]   145   4e-33
ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containi...   127   7e-28
ref|XP_003595043.1| Pentatricopeptide repeat-containing protein ...   120   1e-25
gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]   120   1e-25

>ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Vitis vinifera]
          Length = 993

 Score =  145 bits (365), Expect = 4e-33
 Identities = 72/161 (44%), Positives = 104/161 (64%)
 Frame = +1

Query: 1   AICILCREACFESAFDVYMAMRKKCLSMTRKCYYVILKGLMSTGSKLLIPIMLNSYVKEY 180
           AIC LC+     +A +VYM MR+K   +T + YY ILKGL+S   K L    LN+++KEY
Sbjct: 508 AICFLCKRGFSLAACEVYMRMRRKQSVVTSRSYYSILKGLISDDQKGLGWPFLNTFLKEY 567

Query: 181 GLSESKIGMILVTYLCEKDVTKAICLLDKMKDNNLLTAIPIAAVEALTKQGRALDAHKLI 360
           G+ E ++  +LV Y+C KD  KA+  L  ++ N    A P++ +++L K GR LDA+KL+
Sbjct: 568 GIDEPRVSKVLVPYMCMKDADKALFFLTNIQVNTSAVAFPVSVLKSLKKNGRILDAYKLV 627

Query: 361 VKTRANNKSSDVIAYSIVVDGLCKEGHLHMALDLCATMRKK 483
           +    N    D++ YSI++D LCKEGHL  ALDLCA ++KK
Sbjct: 628 IGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKK 668


>emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
          Length = 993

 Score =  145 bits (365), Expect = 4e-33
 Identities = 72/161 (44%), Positives = 104/161 (64%)
 Frame = +1

Query: 1   AICILCREACFESAFDVYMAMRKKCLSMTRKCYYVILKGLMSTGSKLLIPIMLNSYVKEY 180
           AIC LC+     +A +VYM MR+K   +T + YY ILKGL+S   K L    LN+++KEY
Sbjct: 508 AICFLCKRGFSLAACEVYMRMRRKQSVVTSRSYYSILKGLISDDQKGLGWPFLNTFLKEY 567

Query: 181 GLSESKIGMILVTYLCEKDVTKAICLLDKMKDNNLLTAIPIAAVEALTKQGRALDAHKLI 360
           G+ E ++  +LV Y+C KD  KA+  L  ++ N    A P++ +++L K GR LDA+KL+
Sbjct: 568 GIDEPRVSKVLVPYMCMKDADKALFFLTNIQVNTSAVAFPVSVLKSLKKNGRILDAYKLV 627

Query: 361 VKTRANNKSSDVIAYSIVVDGLCKEGHLHMALDLCATMRKK 483
           +    N    D++ YSI++D LCKEGHL  ALDLCA ++KK
Sbjct: 628 IGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKK 668


>ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
            mitochondrial-like [Glycine max]
          Length = 1064

 Score =  127 bits (320), Expect = 7e-28
 Identities = 69/161 (42%), Positives = 103/161 (63%)
 Frame = +1

Query: 1    AICILCREACFESAFDVYMAMRKKCLSMTRKCYYVILKGLMSTGSKLLIPIMLNSYVKEY 180
            +I +LC+    + A  ++M M+KK LS+T   YY IL+G ++ G++  I  +LNS++K+Y
Sbjct: 580  SIFLLCQRGLLDDANHMWMMMKKKGLSVTCNSYYSILRGHLNNGNREQIYPLLNSFLKDY 639

Query: 181  GLSESKIGMILVTYLCEKDVTKAICLLDKMKDNNLLTAIPIAAVEALTKQGRALDAHKLI 360
            GL E  +  IL  YLC KDV  AI  L K  DN+       + ++ L K+GRALDA++L+
Sbjct: 640  GLVEPMVQKILACYLCLKDVNGAIRFLGKTMDNSSTVTFLTSILKILIKEGRALDAYRLV 699

Query: 361  VKTRANNKSSDVIAYSIVVDGLCKEGHLHMALDLCATMRKK 483
             +T+ +N       Y+IV+DGLCK G+L+ ALDLCA + KK
Sbjct: 700  TETQ-DNLPVMYADYAIVIDGLCKGGYLNKALDLCAFVEKK 739


>ref|XP_003595043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355484091|gb|AES65294.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 1070

 Score =  120 bits (300), Expect(2) = 1e-25
 Identities = 62/162 (38%), Positives = 102/162 (62%), Gaps = 1/162 (0%)
 Frame = +1

Query: 1    AICILCREACFESAFDVYMAMRKKCLSMTRKCYYVILKGLMST-GSKLLIPIMLNSYVKE 177
            +I +LC+    + A+ ++MAM+KK L +T K Y+ +L+ L+   G++  I  +LN ++KE
Sbjct: 583  SIFLLCKRGLLDDAYQLWMAMKKKGLPVTCKSYHSLLRRLLCVVGNREQILPLLNCFLKE 642

Query: 178  YGLSESKIGMILVTYLCEKDVTKAICLLDKMKDNNLLTAIPIAAVEALTKQGRALDAHKL 357
            YGL E K+  +L  Y+C KDV  A+  L K   N+     P++ ++ L K+GRALDA+KL
Sbjct: 643  YGLVEPKVQKVLAQYICLKDVDSALRFLGKTSYNSSAVTFPVSILKVLIKEGRALDAYKL 702

Query: 358  IVKTRANNKSSDVIAYSIVVDGLCKEGHLHMALDLCATMRKK 483
            ++  + ++     + Y +V+ GLCK G+L+ ALDLC  + KK
Sbjct: 703  LMGVQ-DDLPVMYVDYGVVIHGLCKGGYLNKALDLCTLIEKK 743



 Score = 21.2 bits (43), Expect(2) = 1e-25
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 476 EKKGIVSNIVTYTS 517
           EKKG+  NIV Y S
Sbjct: 741 EKKGVNLNIVIYNS 754


>gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1053

 Score =  120 bits (300), Expect(2) = 1e-25
 Identities = 62/162 (38%), Positives = 102/162 (62%), Gaps = 1/162 (0%)
 Frame = +1

Query: 1    AICILCREACFESAFDVYMAMRKKCLSMTRKCYYVILKGLMST-GSKLLIPIMLNSYVKE 177
            +I +LC+    + A+ ++MAM+KK L +T K Y+ +L+ L+   G++  I  +LN ++KE
Sbjct: 566  SIFLLCKRGLLDDAYQLWMAMKKKGLPVTCKSYHSLLRRLLCVVGNREQILPLLNCFLKE 625

Query: 178  YGLSESKIGMILVTYLCEKDVTKAICLLDKMKDNNLLTAIPIAAVEALTKQGRALDAHKL 357
            YGL E K+  +L  Y+C KDV  A+  L K   N+     P++ ++ L K+GRALDA+KL
Sbjct: 626  YGLVEPKVQKVLAQYICLKDVDSALRFLGKTSYNSSAVTFPVSILKVLIKEGRALDAYKL 685

Query: 358  IVKTRANNKSSDVIAYSIVVDGLCKEGHLHMALDLCATMRKK 483
            ++  + ++     + Y +V+ GLCK G+L+ ALDLC  + KK
Sbjct: 686  LMGVQ-DDLPVMYVDYGVVIHGLCKGGYLNKALDLCTLIEKK 726



 Score = 21.2 bits (43), Expect(2) = 1e-25
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 476 EKKGIVSNIVTYTS 517
           EKKG+  NIV Y S
Sbjct: 724 EKKGVNLNIVIYNS 737