BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012091
         (708 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LL85.1|WHY1_SOLTU RecName: Full=Single-stranded DNA-bindig ...   288   7e-76
ref|XP_002520128.1| conserved hypothetical protein [Ricinus comm...   286   4e-75
pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regul...   284   1e-74
ref|XP_002277278.1| PREDICTED: uncharacterized protein LOC100253...   283   2e-74
ref|XP_002311601.1| predicted protein [Populus trichocarpa] gi|1...   281   1e-73

>sp|Q9LL85.1|WHY1_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY1,
           chloroplastic; AltName: Full=DNA-binding protein p24;
           AltName: Full=PR-10a binding factor 2; Short=PBF-2;
           AltName: Full=Protein WHIRLY 1; Short=StWhy1; Flags:
           Precursor gi|9651810|gb|AAF91282.1|AF233342_1
           DNA-binding protein p24 [Solanum tuberosum]
          Length = 274

 Score =  288 bits (737), Expect = 7e-76
 Identities = 137/186 (73%), Positives = 165/186 (88%)
 Frame = +3

Query: 150 LTVKSRRPEYFEPQQKFNTTDSFTPQQSLGALRPRVFVGHSIYKGKAALTIEPKAPDFSP 329
           L++  R  +YFEPQQ+         QQ  GA  P+VFVG+SIYKGKAALT+EP++P+FSP
Sbjct: 61  LSLTCRHSDYFEPQQQQQQQQ----QQPQGASTPKVFVGYSIYKGKAALTVEPRSPEFSP 116

Query: 330 LDSGAYRLSKEGFVLLQFAPASGVRQYDWSRKQVFSLSVTEIGTLMGLGAKDSCEFFHDP 509
           LDSGA++LS+EG V+LQFAPA+GVRQYDWSRKQVFSLSVTEIG+++ LGAKDSCEFFHDP
Sbjct: 117 LDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDP 176

Query: 510 NKGKSDEGKVRKVLKAEPLPDGSGHFFNLSVQNKLLNVDESIYIPVSKAEFTVLVSAFNY 689
           NKG+SDEG+VRKVLK EPLPDGSGHFFNLSVQNKL+N+DE+IYIPV+KAEF VLVSAFN+
Sbjct: 177 NKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNF 236

Query: 690 ILPFLL 707
           ++P+LL
Sbjct: 237 VMPYLL 242


>ref|XP_002520128.1| conserved hypothetical protein [Ricinus communis]
           gi|223540620|gb|EEF42183.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 271

 Score =  286 bits (731), Expect = 4e-75
 Identities = 141/190 (74%), Positives = 168/190 (88%), Gaps = 6/190 (3%)
 Frame = +3

Query: 156 VKSRRPEYFEPQQ-KFN-----TTDSFTPQQSLGALRPRVFVGHSIYKGKAALTIEPKAP 317
           VK R+ E+++ QQ K+N     + DS    QS  A+ PRV+VGHSIYKGKAALT+EP+AP
Sbjct: 51  VKCRQSEFYDQQQQKYNPSRPSSNDSSFASQSPAAV-PRVYVGHSIYKGKAALTVEPRAP 109

Query: 318 DFSPLDSGAYRLSKEGFVLLQFAPASGVRQYDWSRKQVFSLSVTEIGTLMGLGAKDSCEF 497
           +F+ LDSGA+++++EGFVLLQFAPA+GVRQYDWSRKQVFSLSVTEIGT++ LGA+DSCEF
Sbjct: 110 EFAALDSGAFKVAREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTIISLGARDSCEF 169

Query: 498 FHDPNKGKSDEGKVRKVLKAEPLPDGSGHFFNLSVQNKLLNVDESIYIPVSKAEFTVLVS 677
           FHDPNKGKSDEGK+RKVLK EPLPDGSGHFFNLSVQNK +N+DESIYIPV+KAEF VL+S
Sbjct: 170 FHDPNKGKSDEGKIRKVLKVEPLPDGSGHFFNLSVQNKPMNMDESIYIPVTKAEFAVLIS 229

Query: 678 AFNYILPFLL 707
           AFNYILP+LL
Sbjct: 230 AFNYILPYLL 239


>pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regulator Pbf-2
           gi|157878743|pdb|1L3A|B Chain B, Structure Of The Plant
           Transcriptional Regulator Pbf-2 gi|157878744|pdb|1L3A|C
           Chain C, Structure Of The Plant Transcriptional
           Regulator Pbf-2 gi|157878745|pdb|1L3A|D Chain D,
           Structure Of The Plant Transcriptional Regulator Pbf-2
          Length = 227

 Score =  284 bits (727), Expect = 1e-74
 Identities = 135/181 (74%), Positives = 161/181 (88%)
 Frame = +3

Query: 165 RRPEYFEPQQKFNTTDSFTPQQSLGALRPRVFVGHSIYKGKAALTIEPKAPDFSPLDSGA 344
           R  +YFEPQQ+         QQ  GA  P+VFVG+SIYKGKAALT+EP++P+FSPLDSGA
Sbjct: 12  RGSDYFEPQQQQQQQQ----QQPQGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGA 67

Query: 345 YRLSKEGFVLLQFAPASGVRQYDWSRKQVFSLSVTEIGTLMGLGAKDSCEFFHDPNKGKS 524
           ++LS+EG V+LQFAPA+GVRQYDWSRKQVFSLSVTEIG+++ LG KDSCEFFHDPNKG+S
Sbjct: 68  FKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGTKDSCEFFHDPNKGRS 127

Query: 525 DEGKVRKVLKAEPLPDGSGHFFNLSVQNKLLNVDESIYIPVSKAEFTVLVSAFNYILPFL 704
           DEG+VRKVLK EPLPDGSGHFFNLSVQNKL+N+DE+IYIPV+KAEF VLVSAFN+++P+L
Sbjct: 128 DEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYL 187

Query: 705 L 707
           L
Sbjct: 188 L 188


>ref|XP_002277278.1| PREDICTED: uncharacterized protein LOC100253653 [Vitis vinifera]
           gi|296086421|emb|CBI32010.3| unnamed protein product
           [Vitis vinifera]
          Length = 268

 Score =  283 bits (724), Expect = 2e-74
 Identities = 138/187 (73%), Positives = 166/187 (88%), Gaps = 2/187 (1%)
 Frame = +3

Query: 153 TVKSRRPEYFEPQQKFNTTDSFTPQQSL--GALRPRVFVGHSIYKGKAALTIEPKAPDFS 326
           +++ R+ +YF+ Q   N T    P  S   GAL+PRVFVGHSIYKGKAALT+EPKAP+F+
Sbjct: 54  SLQCRQSDYFQQQ---NITRRQPPNDSSFGGALQPRVFVGHSIYKGKAALTVEPKAPEFT 110

Query: 327 PLDSGAYRLSKEGFVLLQFAPASGVRQYDWSRKQVFSLSVTEIGTLMGLGAKDSCEFFHD 506
           PLDSGA+++SKEGFVLLQFAPA+GVRQYDW RKQVFSLSVTEIG+L+ LGA++SCEFFHD
Sbjct: 111 PLDSGAFKVSKEGFVLLQFAPAAGVRQYDWGRKQVFSLSVTEIGSLISLGARESCEFFHD 170

Query: 507 PNKGKSDEGKVRKVLKAEPLPDGSGHFFNLSVQNKLLNVDESIYIPVSKAEFTVLVSAFN 686
           P KG+S+EGKVRKVLK EPLPDGSGHFFNLSVQNKLLN+DE+IYIPV++AEF VL+SAFN
Sbjct: 171 PFKGRSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLLNMDENIYIPVTRAEFAVLISAFN 230

Query: 687 YILPFLL 707
           +I+P+LL
Sbjct: 231 FIVPYLL 237


>ref|XP_002311601.1| predicted protein [Populus trichocarpa] gi|118485247|gb|ABK94483.1|
           unknown [Populus trichocarpa]
           gi|222851421|gb|EEE88968.1| predicted protein [Populus
           trichocarpa]
          Length = 265

 Score =  281 bits (718), Expect = 1e-73
 Identities = 149/233 (63%), Positives = 174/233 (74%), Gaps = 6/233 (2%)
 Frame = +3

Query: 27  MQQLISQKCCSSLPFHPQLILKNPNNPFHLXXXXXXXXXXXLTVKSR---RPEYFEPQQK 197
           M QL S    SS P +P+L L   N+                  K     + +Y++ Q K
Sbjct: 1   MLQLNSVSRVSSSPQNPKLWLPQYNSLCSTKSISLNSKTSSTEKKKTLGVKCQYYDQQHK 60

Query: 198 FNTTDSFTPQQS---LGALRPRVFVGHSIYKGKAALTIEPKAPDFSPLDSGAYRLSKEGF 368
             TT S +   S   +G   P+VFVGHSIYKGKAALT+EP++P+FSPLDSGAY+L KEGF
Sbjct: 61  TFTTSSRSSPSSAPPVGESPPKVFVGHSIYKGKAALTVEPRSPEFSPLDSGAYKLVKEGF 120

Query: 369 VLLQFAPASGVRQYDWSRKQVFSLSVTEIGTLMGLGAKDSCEFFHDPNKGKSDEGKVRKV 548
           VLLQFAPA+ VRQYDW+RKQVFSLSVTEIG L+ L AK SCEFFHDPNKGKSDEGKVRK+
Sbjct: 121 VLLQFAPAASVRQYDWTRKQVFSLSVTEIGHLVSLDAKGSCEFFHDPNKGKSDEGKVRKL 180

Query: 549 LKAEPLPDGSGHFFNLSVQNKLLNVDESIYIPVSKAEFTVLVSAFNYILPFLL 707
           LK EPLPDGSGHFFNLSVQNK+LN+DE+IYIPV+KAE+TVL SAFNYILP+LL
Sbjct: 181 LKVEPLPDGSGHFFNLSVQNKVLNIDENIYIPVTKAEYTVLTSAFNYILPYLL 233