BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012059
         (1318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002872360.1| hypothetical protein ARALYDRAFT_489706 [Arab...   187   4e-45
ref|XP_002285735.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   185   2e-44
emb|CAN61580.1| hypothetical protein VITISV_008033 [Vitis vinifera]   185   2e-44
ref|NP_192643.2| RNA recognition motif-containing protein [Arabi...   184   3e-44
dbj|BAD43393.1| putative protein [Arabidopsis thaliana]               183   7e-44

>ref|XP_002872360.1| hypothetical protein ARALYDRAFT_489706 [Arabidopsis lyrata subsp.
            lyrata] gi|297318197|gb|EFH48619.1| hypothetical protein
            ARALYDRAFT_489706 [Arabidopsis lyrata subsp. lyrata]
          Length = 300

 Score =  187 bits (476), Expect = 4e-45
 Identities = 99/231 (42%), Positives = 151/231 (65%), Gaps = 8/231 (3%)
 Frame = -1

Query: 1099 STTEQTLVENPTTES-----EQEPKTRLIAQNIPWNSTAEDIKNLFQKHGNVTNVELSMY 935
            +TT+  ++E+ ++ +     E+  KTRLIAQN+PW ST EDI++LF+K+GNV ++E+SM+
Sbjct: 67   TTTQDPVLESSSSSATEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGNVIDIEMSMH 126

Query: 934  NKDRNRGLAFITMGSXXXXXXXXXXLGTCEIEGRSVSVAYAKVRKTK---PRVITESTPK 764
             K+RNRGL FI M S          L +C+ EGR + V YAK +K K   PR      P 
Sbjct: 127  KKERNRGLVFIEMASPDEAATALKSLESCDYEGRRLKVDYAKTKKKKTYAPREKPSPVPT 186

Query: 763  YDVFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGFVSFRSMEKAEEA 584
            +++FVANL+++ ++K L EFF     +VVS EV +Q  P R+ +GYGFVSF++ ++AE A
Sbjct: 187  FNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFQENP-RRSSGYGFVSFKTKKQAEAA 245

Query: 583  IRDFQGKELMGKPVRLALSNRILKGQSKDGISLGEKSGESNSEERRSDNAE 431
            + +FQGK+ MG+P+RLA S + +K Q+K+G+   E+  E +  E  +   E
Sbjct: 246  LIEFQGKDFMGRPIRLAKSKQFVKLQAKEGLQPPEEEEEPSPSEAMTQEVE 296


>ref|XP_002285735.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
            gi|302142004|emb|CBI19207.3| unnamed protein product
            [Vitis vinifera]
          Length = 294

 Score =  185 bits (470), Expect = 2e-44
 Identities = 103/230 (44%), Positives = 148/230 (64%), Gaps = 3/230 (1%)
 Frame = -1

Query: 1105 TPSTTEQTLVENPTTESEQE-PKTRLIAQNIPWNSTAEDIKNLFQKHGNVTNVELSMYNK 929
            +PST     V+ P  + E+E  +TRLIAQNIPW  TA+DI++LF+K+G V +VELSM+NK
Sbjct: 68   SPSTA--VTVDTPQNDEEEEFSRTRLIAQNIPWTCTAQDIRSLFEKYGTVLDVELSMHNK 125

Query: 928  DRNRGLAFITMGSXXXXXXXXXXLGTCEIEGRSVSVAYAKVRKTKPRVITESTP--KYDV 755
             RNRGLAFI+MGS          L + E+EGR++ V YA  +K KP    +  P   Y++
Sbjct: 126  TRNRGLAFISMGSPEEALAALSNLESYELEGRAIKVNYANPQKKKPSSPIQHKPVTPYNL 185

Query: 754  FVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGFVSFRSMEKAEEAIRD 575
            F+ANL ++ ++KDL EFF   N +VVSAEV +   P R+ +GYGFVSF S E+A+ A+  
Sbjct: 186  FIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENP-RRSSGYGFVSFGSKEEADTALSS 244

Query: 574  FQGKELMGKPVRLALSNRILKGQSKDGISLGEKSGESNSEERRSDNAEEI 425
            FQG+  MG+P+R+A S R +K ++K      + +   NS   +S   ++I
Sbjct: 245  FQGQMFMGRPLRVARSRRFVKRENKMSDQTEDVANPLNSNSEQSGEGDDI 294


>emb|CAN61580.1| hypothetical protein VITISV_008033 [Vitis vinifera]
          Length = 294

 Score =  185 bits (470), Expect = 2e-44
 Identities = 103/230 (44%), Positives = 148/230 (64%), Gaps = 3/230 (1%)
 Frame = -1

Query: 1105 TPSTTEQTLVENPTTESEQE-PKTRLIAQNIPWNSTAEDIKNLFQKHGNVTNVELSMYNK 929
            +PST     V+ P  + E+E  +TRLIAQNIPW  TA+DI++LF+K+G V +VELSM+NK
Sbjct: 68   SPSTA--VTVDTPQNDEEEEFSRTRLIAQNIPWTCTAQDIRSLFEKYGTVLDVELSMHNK 125

Query: 928  DRNRGLAFITMGSXXXXXXXXXXLGTCEIEGRSVSVAYAKVRKTKPRVITESTP--KYDV 755
             RNRGLAFI+MGS          L + E+EGR++ V YA  +K KP    +  P   Y++
Sbjct: 126  TRNRGLAFISMGSPEEALAALSNLESYELEGRAIKVNYANPQKKKPSSPIQHKPVTPYNL 185

Query: 754  FVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGFVSFRSMEKAEEAIRD 575
            F+ANL ++ ++KDL EFF   N +VVSAEV +   P R+ +GYGFVSF S E+A+ A+  
Sbjct: 186  FIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENP-RRSSGYGFVSFGSKEEADTALSS 244

Query: 574  FQGKELMGKPVRLALSNRILKGQSKDGISLGEKSGESNSEERRSDNAEEI 425
            FQG+  MG+P+R+A S R +K ++K      + +   NS   +S   ++I
Sbjct: 245  FQGQMFMGRPLRVARSRRFVKRENKMSDQTEDVANPLNSNSEQSGEGDDI 294


>ref|NP_192643.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
            gi|38603886|gb|AAR24688.1| At4g09040 [Arabidopsis
            thaliana] gi|51968384|dbj|BAD42884.1| putative protein
            [Arabidopsis thaliana] gi|51969486|dbj|BAD43435.1|
            putative protein [Arabidopsis thaliana]
            gi|51969588|dbj|BAD43486.1| putative protein [Arabidopsis
            thaliana] gi|51970774|dbj|BAD44079.1| putative protein
            [Arabidopsis thaliana] gi|62319325|dbj|BAD94588.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332657315|gb|AEE82715.1| RNA recognition
            motif-containing protein [Arabidopsis thaliana]
          Length = 304

 Score =  184 bits (468), Expect = 3e-44
 Identities = 99/243 (40%), Positives = 153/243 (62%), Gaps = 10/243 (4%)
 Frame = -1

Query: 1129 KTNLLVFQTPSTTEQTLVENPTTES-------EQEPKTRLIAQNIPWNSTAEDIKNLFQK 971
            K+  L     +TT++ ++E+ ++ S       E+  KTRLIAQN+PW ST EDI++LF+K
Sbjct: 57   KSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEK 116

Query: 970  HGNVTNVELSMYNKDRNRGLAFITMGSXXXXXXXXXXLGTCEIEGRSVSVAYAKVRKTK- 794
            +G+V ++E+SM+ K+RNRGL FI M S          L +CE EGR + V YAK +K K 
Sbjct: 117  YGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKT 176

Query: 793  --PRVITESTPKYDVFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGF 620
              PR      P +++FVANL+++ ++K L EFF     +VVS EV +   P R+ +GYGF
Sbjct: 177  YAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENP-RRSSGYGF 235

Query: 619  VSFRSMEKAEEAIRDFQGKELMGKPVRLALSNRILKGQSKDGISLGEKSGESNSEERRSD 440
            VSF++ ++AE A+ +FQGK+ +G+P+RLA S + +K Q+K+G+   E+  E    +  + 
Sbjct: 236  VSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQSETM 295

Query: 439  NAE 431
              E
Sbjct: 296  TQE 298


>dbj|BAD43393.1| putative protein [Arabidopsis thaliana]
          Length = 304

 Score =  183 bits (465), Expect = 7e-44
 Identities = 98/243 (40%), Positives = 153/243 (62%), Gaps = 10/243 (4%)
 Frame = -1

Query: 1129 KTNLLVFQTPSTTEQTLVENPTTES-------EQEPKTRLIAQNIPWNSTAEDIKNLFQK 971
            K+  L     +TT++ ++++ ++ S       E+  KTRLIAQN+PW ST EDI++LF+K
Sbjct: 57   KSRNLTSYFSTTTQEPVLDSSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEK 116

Query: 970  HGNVTNVELSMYNKDRNRGLAFITMGSXXXXXXXXXXLGTCEIEGRSVSVAYAKVRKTK- 794
            +G+V ++E+SM+ K+RNRGL FI M S          L +CE EGR + V YAK +K K 
Sbjct: 117  YGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKT 176

Query: 793  --PRVITESTPKYDVFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGF 620
              PR      P +++FVANL+++ ++K L EFF     +VVS EV +   P R+ +GYGF
Sbjct: 177  YAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENP-RRSSGYGF 235

Query: 619  VSFRSMEKAEEAIRDFQGKELMGKPVRLALSNRILKGQSKDGISLGEKSGESNSEERRSD 440
            VSF++ ++AE A+ +FQGK+ +G+P+RLA S + +K Q+K+G+   E+  E    +  + 
Sbjct: 236  VSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQSETM 295

Query: 439  NAE 431
              E
Sbjct: 296  TQE 298