BLASTX nr result
ID: Coptis21_contig00011991
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00011991
(1972 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003588677.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 195 5e-53
ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 206 2e-50
ref|XP_003589307.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 206 2e-50
ref|XP_002281901.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g... 202 2e-49
emb|CAN79162.1| hypothetical protein VITISV_019244 [Vitis vinifera] 202 2e-49
>ref|XP_003588677.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
gi|355477725|gb|AES58928.1| F-box/FBD/LRR-repeat protein
[Medicago truncatula]
Length = 657
Score = 195 bits (495), Expect(3) = 5e-53
Identities = 119/326 (36%), Positives = 189/326 (57%), Gaps = 2/326 (0%)
Frame = +1
Query: 484 DYISNLPDGIIEEIIQRLPIKDSVRTSVLSTKWKNRWMTIPNLIFDEHCMRQSSR--KVL 657
D IS LP +I+ I+ LPI+D VRTS+LS KW+ +W+TIPNL+FD C+ +S +
Sbjct: 323 DRISVLPGDVIDRILSCLPIRDVVRTSILSNKWRYKWITIPNLVFDSQCVSATSEHPAAI 382
Query: 658 TDKFAGIIDQVLAQHTGRIDKFKLSVYYLKAEYACSYIDHWIDVLSKKRIQDLSIEIDKG 837
K IID VL + G I+KFKLS + L + + +D WI L+++ I++L + + G
Sbjct: 383 KRKLLAIIDHVLLLYYGPINKFKLSPFGL---ISATALDRWIFHLTRRSIKELVLGLSIG 439
Query: 838 CVFVVTDSLFSCENLRILKLRQVLIRHLPAAFNGFKHLKDLYLDYVIIHCEDDFYSLLAS 1017
+ + LFSC++L L L L++ P+ G K+LK LYL V I +D F SL++S
Sbjct: 440 QSYKIPWCLFSCQSLHYLTLFSCLLKP-PSMIEGLKNLKSLYLVKVTI-SQDAFESLISS 497
Query: 1018 KCPLLEKLTMKDMGKAPFVVRVPPTLKYLHLIGMFTNMRIENAEFLTVFVIRVSTRTRTL 1197
CPLLEKL + + + P L L ++G F ++ EN L ++ +S +
Sbjct: 498 -CPLLEKLMLAEFDGFTQINIHAPNLNGLGIVGKFEDISFENTYLLNYVIVDLSLCLNSE 556
Query: 1198 YEVKRLQKKETCNLSIVLAFLPGIEKLELWSYAMEYLSIGFIPIKLPTMLIYLKEIFLVM 1377
RLQ + NL A + I KL++ Y +YL+ G +P+KLPT I L ++L +
Sbjct: 557 SNHSRLQGSSS-NLLNFFAHIHHIYKLDIRGYFFKYLAAGVVPVKLPTPCINLTYLWLSI 615
Query: 1378 DIGNINDLASAFCLFRSAPNLEQVRI 1455
+ ++ ++++A C+FRS+PNL+++ I
Sbjct: 616 NFYDLKEISTALCVFRSSPNLKELNI 641
Score = 34.3 bits (77), Expect(3) = 5e-53
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Frame = +2
Query: 41 LEKLKLISCDGFNRLKLCAPNLRLFHICGYSVMINLSNTTKLESVHMEL-------LSSG 199
LEKL +GF ++ + APNL+ I G I+ NT KL V ++L SS
Sbjct: 164 LEKLIFDEFEGFTKININAPNLKSLGISGKFEDISFINTFKLTCVAVDLSLYLNSESSSN 223
Query: 200 VWGLFPWKGRALEDVLCGLIYAEKLNVLNHFM 295
+ F E + G K +V++ ++
Sbjct: 224 LLDFFTQLHHVYELYVSGYFSKSKFSVVHQYL 255
Score = 28.1 bits (61), Expect(3) = 5e-53
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 321 LVVNFEDSKEISTALCLLRSAAF*KAISIQINDLLDAT 434
L +NF + KEISTAL + RS+ K + I L +++
Sbjct: 276 LSINFNELKEISTALSVFRSSPNLKELKIFAGKLSESS 313
Score = 160 bits (406), Expect = 9e-37
Identities = 113/334 (33%), Positives = 173/334 (51%), Gaps = 10/334 (2%)
Frame = +1
Query: 484 DYISNLPDGIIEEIIQRLPIKDSVRTSVLSTKWKNRWMTIPNLIFDEHCMRQSSRK--VL 657
D IS LP +I+ I+ RLPI+D VRTSVL KW+ +W TIPNL+FD+ C+ +S + V+
Sbjct: 7 DRISCLPGDVIDRILLRLPIRDVVRTSVLCNKWRYKWTTIPNLVFDKQCVSATSHRPLVI 66
Query: 658 TDKFAGIIDQVLAQHTGRIDKFKLSVYYLKAEYACSYIDHWIDVLSKKRIQDLSIEIDKG 837
K IID VL ++G I+KFK S I+ L IEI KG
Sbjct: 67 ERKLLAIIDHVLLLYSGPINKFKRS------------------------IKKLVIEISKG 102
Query: 838 CVFVVTDSLFSCENLRILKLRQVLIRHLPAAFNGFKHLKDLYLDYVIIHCEDDFYSLLAS 1017
+ + LFSC++L L L L++ P+ GFK+LK L LD+ + +D F +LL
Sbjct: 103 QPYKIPWCLFSCQSLLHLSLSYGLLKP-PSTIVGFKNLKSLELDHFTM-SQDAFENLLFG 160
Query: 1018 KCPLLEKLTMKDMGKAPFVVRVPPTLKYLHLIGMFTNMRIENAEFLTVFVIRVSTRTRTL 1197
CPLLEKL + + P LK L + G F E+ F+ F + +L
Sbjct: 161 -CPLLEKLIFDEFEGFTKININAPNLKSLGISGKF-----EDISFINTFKLTCVAVDLSL 214
Query: 1198 YEVKRLQKKETCNL--------SIVLAFLPGIEKLELWSYAMEYLSIGFIPIKLPTMLIY 1353
Y L + + NL + ++ G +S +YL+ G +P+KLPT I
Sbjct: 215 Y----LNSESSSNLLDFFTQLHHVYELYVSGYFSKSKFSVVHQYLAAGVVPLKLPTPCIN 270
Query: 1354 LKEIFLVMDIGNINDLASAFCLFRSAPNLEQVRI 1455
L ++L ++ + ++++A +FRS+PNL++++I
Sbjct: 271 LMSLWLSINFNELKEISTALSVFRSSPNLKELKI 304
>ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
gi|355478356|gb|AES59559.1| F-box/FBD/LRR-repeat protein
[Medicago truncatula]
Length = 428
Score = 206 bits (524), Expect = 2e-50
Identities = 134/400 (33%), Positives = 225/400 (56%), Gaps = 4/400 (1%)
Frame = +1
Query: 484 DYISNLPDGIIEEIIQRLPIKDSVRTSVLSTKWKNRWMTIPNLIFDEHCMRQSSRK--VL 657
D IS+LP II++I+ LPIK++VRTS+LSTKW+ +W T+PNL+FD C+ +S V+
Sbjct: 17 DRISSLPGHIIDQILSILPIKEAVRTSILSTKWRYKWATLPNLVFDSQCISDTSEDLLVI 76
Query: 658 TDKFAGIIDQVLAQHTGRIDKFKLSVYYLKAEYACSYIDHWIDVLSKKRIQDLSIEIDKG 837
K + IID VL H+G I KFKLS L + ID W L+++ +++ +EI KG
Sbjct: 77 KSKLSRIIDHVLLLHSGPIKKFKLSHREL---IGVTDIDRWTLHLTRRPVKEFVLEIWKG 133
Query: 838 CVFVVTDSLFSCENLRILKLRQVLIRHLPAAFNGFKHLKDLYLDYVIIHCEDDFYSLLAS 1017
+ + LFSC+ L L+L + P+ F GF++LK L L +V + D + L S
Sbjct: 134 QRYKIPSCLFSCQGLHHLELFNCWLIP-PSTFQGFRNLKSLDLQHVTL--SQDAFENLIS 190
Query: 1018 KCPLLEKLTMKDMGKAPFVVRVPPTLKYLHLIGMFTNMRIENAEFLTVFVIRVSTRTRTL 1197
CPLLE+LT+ + ++ P L++ + G F ++ +N L V I + +
Sbjct: 191 TCPLLERLTLMNFDGFNYLNIHAPNLQFFDIGGKFEDISFKNTSQLAVVSIGLYVNFES- 249
Query: 1198 YEVKRLQKKETCNLSIVLAFLPGIEKLELWSYAMEYLSIGFIPIKLPTMLIYLKEIFLVM 1377
RL + T NL L LP I++LE+ SY ++YL++G +P+KLPT I L + + +
Sbjct: 250 -SQGRLHGR-TSNLVEFLIHLPRIQRLEIQSYFLKYLALGAVPVKLPTPCIDLSYLSIRI 307
Query: 1378 DIGNINDLASAFCLFRSAPNLEQVRI-GEWFNTPTSIEYADLFWHIQKKFL-YRFNKLKI 1551
+ + ++++A CLFRS+PNL ++ I P + + W + +L + +++
Sbjct: 308 NFYDSKEISAALCLFRSSPNLRELEILARPEEQPLPLAHHADCW--EDVYLDWPVMRVRH 365
Query: 1552 LRLEQLSCWTSEVFLIDYMMRYSPHLEELIIEVKENVNTQ 1671
+R++ +S E+ I +++ YSP LE + ++ N + +
Sbjct: 366 VRIDGISGIKPELDFISFILLYSPVLERMTVKPALNASPE 405
Score = 43.5 bits (101), Expect(2) = 2e-07
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Frame = +2
Query: 41 LEKLKLISCDGFNRLKLCAPNLRLFHICGYSVMINLSNTTKLESVHMELLSS--GVWGLF 214
LE+L L++ DGFN L + APNL+ F I G I+ NT++L V + L + G
Sbjct: 195 LERLTLMNFDGFNYLNIHAPNLQFFDIGGKFEDISFKNTSQLAVVSIGLYVNFESSQGRL 254
Query: 215 PWKGRALEDVLCGLIYAEKLNVLNHFMKIL 304
+ L + L L ++L + ++F+K L
Sbjct: 255 HGRTSNLVEFLIHLPRIQRLEIQSYFLKYL 284
Score = 40.0 bits (92), Expect(2) = 2e-07
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 306 LSYISLVVNFEDSKEISTALCLLRSA 383
LSY+S+ +NF DSKEIS ALCL RS+
Sbjct: 300 LSYLSIRINFYDSKEISAALCLFRSS 325
>ref|XP_003589307.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
gi|355478355|gb|AES59558.1| F-box/FBD/LRR-repeat protein
[Medicago truncatula]
Length = 660
Score = 206 bits (524), Expect = 2e-50
Identities = 134/400 (33%), Positives = 225/400 (56%), Gaps = 4/400 (1%)
Frame = +1
Query: 484 DYISNLPDGIIEEIIQRLPIKDSVRTSVLSTKWKNRWMTIPNLIFDEHCMRQSSRK--VL 657
D IS+LP II++I+ LPIK++VRTS+LSTKW+ +W T+PNL+FD C+ +S V+
Sbjct: 249 DRISSLPGHIIDQILSILPIKEAVRTSILSTKWRYKWATLPNLVFDSQCISDTSEDLLVI 308
Query: 658 TDKFAGIIDQVLAQHTGRIDKFKLSVYYLKAEYACSYIDHWIDVLSKKRIQDLSIEIDKG 837
K + IID VL H+G I KFKLS L + ID W L+++ +++ +EI KG
Sbjct: 309 KSKLSRIIDHVLLLHSGPIKKFKLSHREL---IGVTDIDRWTLHLTRRPVKEFVLEIWKG 365
Query: 838 CVFVVTDSLFSCENLRILKLRQVLIRHLPAAFNGFKHLKDLYLDYVIIHCEDDFYSLLAS 1017
+ + LFSC+ L L+L + P+ F GF++LK L L +V + D + L S
Sbjct: 366 QRYKIPSCLFSCQGLHHLELFNCWLIP-PSTFQGFRNLKSLDLQHVTL--SQDAFENLIS 422
Query: 1018 KCPLLEKLTMKDMGKAPFVVRVPPTLKYLHLIGMFTNMRIENAEFLTVFVIRVSTRTRTL 1197
CPLLE+LT+ + ++ P L++ + G F ++ +N L V I + +
Sbjct: 423 TCPLLERLTLMNFDGFNYLNIHAPNLQFFDIGGKFEDISFKNTSQLAVVSIGLYVNFES- 481
Query: 1198 YEVKRLQKKETCNLSIVLAFLPGIEKLELWSYAMEYLSIGFIPIKLPTMLIYLKEIFLVM 1377
RL + T NL L LP I++LE+ SY ++YL++G +P+KLPT I L + + +
Sbjct: 482 -SQGRLHGR-TSNLVEFLIHLPRIQRLEIQSYFLKYLALGAVPVKLPTPCIDLSYLSIRI 539
Query: 1378 DIGNINDLASAFCLFRSAPNLEQVRI-GEWFNTPTSIEYADLFWHIQKKFL-YRFNKLKI 1551
+ + ++++A CLFRS+PNL ++ I P + + W + +L + +++
Sbjct: 540 NFYDSKEISAALCLFRSSPNLRELEILARPEEQPLPLAHHADCW--EDVYLDWPVMRVRH 597
Query: 1552 LRLEQLSCWTSEVFLIDYMMRYSPHLEELIIEVKENVNTQ 1671
+R++ +S E+ I +++ YSP LE + ++ N + +
Sbjct: 598 VRIDGISGIKPELDFISFILLYSPVLERMTVKPALNASPE 637
Score = 43.5 bits (101), Expect(2) = 2e-07
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Frame = +2
Query: 41 LEKLKLISCDGFNRLKLCAPNLRLFHICGYSVMINLSNTTKLESVHMELLSS--GVWGLF 214
LE+L L++ DGFN L + APNL+ F I G I+ NT++L V + L + G
Sbjct: 427 LERLTLMNFDGFNYLNIHAPNLQFFDIGGKFEDISFKNTSQLAVVSIGLYVNFESSQGRL 486
Query: 215 PWKGRALEDVLCGLIYAEKLNVLNHFMKIL 304
+ L + L L ++L + ++F+K L
Sbjct: 487 HGRTSNLVEFLIHLPRIQRLEIQSYFLKYL 516
Score = 40.0 bits (92), Expect(2) = 2e-07
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 306 LSYISLVVNFEDSKEISTALCLLRSA 383
LSY+S+ +NF DSKEIS ALCL RS+
Sbjct: 532 LSYLSIRINFYDSKEISAALCLFRSS 557
>ref|XP_002281901.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Vitis
vinifera]
Length = 416
Score = 202 bits (515), Expect = 2e-49
Identities = 131/390 (33%), Positives = 221/390 (56%), Gaps = 2/390 (0%)
Frame = +1
Query: 484 DYISNLPDGIIEEIIQRLPIKDSVRTSVLSTKWKNRWMTIPNLIFDEHCMRQSS--RKVL 657
D ISNLP II++I+ L I+D+VR SVLS+KW+ +W+T+P L+FD C+ SS + ++
Sbjct: 6 DKISNLPGHIIDKILSLLSIRDAVRMSVLSSKWRFKWVTLPYLVFDNQCVSISSQDQTLV 65
Query: 658 TDKFAGIIDQVLAQHTGRIDKFKLSVYYLKAEYACSYIDHWIDVLSKKRIQDLSIEIDKG 837
+K IID VL HTG I KF+LS + S ID WI LS+ I++ +EI KG
Sbjct: 66 KNKLVNIIDHVLLLHTGPIHKFRLS---HRDFLGGSDIDRWILYLSRTPIREFILEIWKG 122
Query: 838 CVFVVTDSLFSCENLRILKLRQVLIRHLPAAFNGFKHLKDLYLDYVIIHCEDDFYSLLAS 1017
+ + L++C++L L+L L++ P F GF LK L L ++I+ +D F +L++S
Sbjct: 123 QHYKLPSCLYNCQSLIHLELFNSLLKP-PPTFKGFMSLKSLDLQHIIM-AQDAFENLISS 180
Query: 1018 KCPLLEKLTMKDMGKAPFVVRVPPTLKYLHLIGMFTNMRIENAEFLTVFVIRVSTRTRTL 1197
CPLLEK T+ + + P L++ G+F ++ +N L I + +
Sbjct: 181 -CPLLEKFTLMNFDGFTHLNIHAPNLQFFDTGGVFYDVNFKNTFLLATVSIGLYV---DI 236
Query: 1198 YEVKRLQKKETCNLSIVLAFLPGIEKLELWSYAMEYLSIGFIPIKLPTMLIYLKEIFLVM 1377
K L + NL A LP I++LE+ SY ++YL+ G +P KLP I L + + +
Sbjct: 237 TNDKNLADGNSRNLVKFFAHLPRIQRLEIQSYFLKYLAAGNVPGKLPAPCIDLTHLSIRI 296
Query: 1378 DIGNINDLASAFCLFRSAPNLEQVRIGEWFNTPTSIEYADLFWHIQKKFLYRFNKLKILR 1557
+ ++ + +A CL RS+PNL+++ + T +E + W ++ + Y F L++++
Sbjct: 297 NFSSVEENLTALCLLRSSPNLQELEMLARPEEQTLLETSTTLWK-KEHWNYSFAHLRVVK 355
Query: 1558 LEQLSCWTSEVFLIDYMMRYSPHLEELIIE 1647
L +S ++ I++++ YSP LE++ ++
Sbjct: 356 LTGISGVGPQLDFINFLLAYSPVLEKMTVK 385
>emb|CAN79162.1| hypothetical protein VITISV_019244 [Vitis vinifera]
Length = 416
Score = 202 bits (515), Expect = 2e-49
Identities = 131/390 (33%), Positives = 221/390 (56%), Gaps = 2/390 (0%)
Frame = +1
Query: 484 DYISNLPDGIIEEIIQRLPIKDSVRTSVLSTKWKNRWMTIPNLIFDEHCMRQSS--RKVL 657
D ISNLP II++I+ L I+D+VR SVLS+KW+ +W+T+P L+FD C+ SS + ++
Sbjct: 6 DKISNLPGHIIDKILSLLSIRDAVRMSVLSSKWRFKWVTLPYLVFDNQCVSISSQDQTLV 65
Query: 658 TDKFAGIIDQVLAQHTGRIDKFKLSVYYLKAEYACSYIDHWIDVLSKKRIQDLSIEIDKG 837
+K IID VL HTG I KF+LS + S ID WI LS+ I++ +EI KG
Sbjct: 66 KNKLVNIIDHVLLLHTGPIHKFRLS---HRDFLGGSDIDRWILYLSRTPIREFILEIWKG 122
Query: 838 CVFVVTDSLFSCENLRILKLRQVLIRHLPAAFNGFKHLKDLYLDYVIIHCEDDFYSLLAS 1017
+ + L++C++L L+L L++ P F GF LK L L ++I+ +D F +L++S
Sbjct: 123 QHYKLPSCLYNCQSLIHLELFNSLLKP-PPTFKGFXSLKSLDLQHIIM-AQDAFENLISS 180
Query: 1018 KCPLLEKLTMKDMGKAPFVVRVPPTLKYLHLIGMFTNMRIENAEFLTVFVIRVSTRTRTL 1197
CPLLEK T+ + + P L++ G+F ++ +N L I + +
Sbjct: 181 -CPLLEKFTLMNFDGFTHLNIHAPNLQFFDTGGVFYDVNFKNTFLLATVSIGLYV---DI 236
Query: 1198 YEVKRLQKKETCNLSIVLAFLPGIEKLELWSYAMEYLSIGFIPIKLPTMLIYLKEIFLVM 1377
K L + NL A LP I++LE+ SY ++YL+ G +P KLP I L + + +
Sbjct: 237 TNDKNLADGNSRNLVKFFAHLPRIQRLEIQSYFLKYLAAGNVPGKLPAPCIDLTHLSIRI 296
Query: 1378 DIGNINDLASAFCLFRSAPNLEQVRIGEWFNTPTSIEYADLFWHIQKKFLYRFNKLKILR 1557
+ ++ + +A CL RS+PNL+++ + T +E + W ++ + Y F L++++
Sbjct: 297 NFSSVEENLTALCLLRSSPNLQELEMLARPEEQTLLETSTTLWK-KEHWNYXFAHLRVVK 355
Query: 1558 LEQLSCWTSEVFLIDYMMRYSPHLEELIIE 1647
L +S ++ I++++ YSP LE++ ++
Sbjct: 356 LTGISGVGPQLDFINFLLAYSPVLEKMTVK 385