BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011894
         (558 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19452.3| unnamed protein product [Vitis vinifera]              103   2e-20
ref|XP_003624481.1| Pentatricopeptide repeat-containing protein ...    74   2e-11
emb|CBI27699.3| unnamed protein product [Vitis vinifera]               70   3e-10
ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat...    70   3e-10
emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]    70   3e-10

>emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  103 bits (257), Expect = 2e-20
 Identities = 54/104 (51%), Positives = 73/104 (70%), Gaps = 4/104 (3%)
 Frame = +1

Query: 10  DALLWNTIINVYVF----LEALSLFSDMISLGTIAITKRVYDSIVCACSNTRIDKYEKIV 177
           D LLWN+II  Y+F    +E L LF  M+S+G +A T+  Y S+V AC ++  +KY  +V
Sbjct: 188 DILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMV 247

Query: 178 HGRIVKDGMLDATIIGNSLVTFYAKCGNTQLANRVFHRMPRKDV 309
           HGRI+K G L+AT + NSLVTFY KCGN Q A+++F R+ RKDV
Sbjct: 248 HGRIIKAG-LEATNLWNSLVTFYGKCGNLQHASQLFERISRKDV 290


>ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240699|gb|ABD32557.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355499496|gb|AES80699.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 672

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
 Frame = +1

Query: 10  DALLWNTIINVY----VFLEALSLFSDMISLGTIAITKRVYDSIVCACSNTRIDKYEKIV 177
           D   WN++I VY    + +EA SLFSDM+  G +        +++ AC+++   +  K +
Sbjct: 263 DVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCI 322

Query: 178 HGRIVKDGMLDATIIGNSLVTFYAKCGNTQLANRVFHRMPRKDV 309
           H ++VK  + D  ++G S+V  Y KCG  ++A + F R+ RK+V
Sbjct: 323 HDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNV 366


>emb|CBI27699.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
 Frame = +1

Query: 4   SDDALLWNTIINVYV----FLEALSLFSDMISLGTIAITKRVYDSIVCACSNTRIDKYEK 171
           S D + WN II  Y     +L+AL LFS+ ISL TI        S++ AC++    +  K
Sbjct: 249 SRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAK 308

Query: 172 IVHGRIVKD-GMLDATIIGNSLVTFYAKCGNTQLANRVFHRMPRKDV 309
            +HG I++  G+ + T +GN+L++FYAKC  TQ A + F  + RKD+
Sbjct: 309 GIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDL 355


>ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Vitis vinifera]
          Length = 868

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
 Frame = +1

Query: 4   SDDALLWNTIINVYV----FLEALSLFSDMISLGTIAITKRVYDSIVCACSNTRIDKYEK 171
           S D + WN II  Y     +L+AL LFS+ ISL TI        S++ AC++    +  K
Sbjct: 310 SRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAK 369

Query: 172 IVHGRIVKD-GMLDATIIGNSLVTFYAKCGNTQLANRVFHRMPRKDV 309
            +HG I++  G+ + T +GN+L++FYAKC  TQ A + F  + RKD+
Sbjct: 370 GIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDL 416


>emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
          Length = 1849

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
 Frame = +1

Query: 4    SDDALLWNTIINVYV----FLEALSLFSDMISLGTIAITKRVYDSIVCACSNTRIDKYEK 171
            S D + WN II  Y     +L+AL LFS+ ISL TI        S++ AC++    +  K
Sbjct: 1242 SRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAK 1301

Query: 172  IVHGRIVKD-GMLDATIIGNSLVTFYAKCGNTQLANRVFHRMPRKDV 309
             +HG I++  G+ + T +GN+L++FYAKC  TQ A + F  + RKD+
Sbjct: 1302 GIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDL 1348