BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011870
         (1325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279347.1| PREDICTED: eukaryotic translation initiation...   407   e-111
ref|XP_002315172.1| predicted protein [Populus trichocarpa] gi|1...   405   e-110
ref|XP_004138431.1| PREDICTED: eukaryotic translation initiation...   398   e-108
ref|XP_002526864.1| eukaryotic translation initiation factor 3f,...   396   e-108
ref|XP_003600862.1| Eukaryotic translation initiation factor 3 s...   385   e-104

>ref|XP_002279347.1| PREDICTED: eukaryotic translation initiation factor 3 subunit F
           [Vitis vinifera] gi|296086088|emb|CBI31529.3| unnamed
           protein product [Vitis vinifera]
          Length = 285

 Score =  407 bits (1045), Expect = e-111
 Identities = 206/278 (74%), Positives = 228/278 (82%)
 Frame = +2

Query: 137 AILQFYPLATSLIAKIHPVVIFNICDCYVRRADQAERVIGTLLGSVLPDGTVDIRNSYAV 316
           A+LQF+P +TSL AK+HP+VIFNICDCYVRR DQAERVIGTLLGS+ PDGTVDIRNSYAV
Sbjct: 7   AVLQFFPSSTSLSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSISPDGTVDIRNSYAV 66

Query: 317 PHNESSDQVALDIDYHHNMLVSHQKVNPKEVIVGWYSTGFGVTAGSALIHDFYSREVQNP 496
           PHNESSDQVALDIDYHHNML+SHQKVNPKEVIVGWYSTG GVT GSALIH+FYSREVQNP
Sbjct: 67  PHNESSDQVALDIDYHHNMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVQNP 126

Query: 497 IHMTVDTGFTNGEASIKAFVSVNLSLGDRPLAMQFQEVPLDLRMVEAERVGFNILKTTMV 676
           IH+TVDT F NGEA+IKAFVSV+LSLG+R LA QFQE+PLDLRMVEAERVGF+ILKTTMV
Sbjct: 127 IHLTVDTTFRNGEATIKAFVSVSLSLGERQLAAQFQEIPLDLRMVEAERVGFDILKTTMV 186

Query: 677 DKLPNDLEGMESSMEKLLALXXXXXXXXXXXXEGRVAADNKIGRFISDTVASVPKIPPAA 856
           +KLP+DLEGME+SME+LLAL            EG+V  DN IGRFI+DTVAS+PKI P A
Sbjct: 187 EKLPSDLEGMEASMERLLALIDDVYKYVDSVVEGQVVPDNDIGRFIADTVASIPKISPPA 246

Query: 857 FDKXXXXXXXXXXXXXXXXXXXXXXXSLAEKLNTAAQI 970
           FD+                       SLAEKLNTAAQI
Sbjct: 247 FDRLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQI 284


>ref|XP_002315172.1| predicted protein [Populus trichocarpa] gi|118484603|gb|ABK94175.1|
           unknown [Populus trichocarpa]
           gi|222864212|gb|EEF01343.1| predicted protein [Populus
           trichocarpa]
          Length = 287

 Score =  405 bits (1041), Expect = e-110
 Identities = 209/289 (72%), Positives = 231/289 (79%), Gaps = 1/289 (0%)
 Frame = +2

Query: 110 MAATNEQAGAILQFYPLATS-LIAKIHPVVIFNICDCYVRRADQAERVIGTLLGSVLPDG 286
           MAA  +Q   +LQF P ++S L AK+HP+VIFNICDCYVRR DQAERVIGTLLGSVLPDG
Sbjct: 1   MAAIEQQT--VLQFAPSSSSTLSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDG 58

Query: 287 TVDIRNSYAVPHNESSDQVALDIDYHHNMLVSHQKVNPKEVIVGWYSTGFGVTAGSALIH 466
           TVDIRNSYAVPHNESS+QVALDIDYHHN+L+SHQKVNPKEVIVGWYSTG GVT GSALIH
Sbjct: 59  TVDIRNSYAVPHNESSEQVALDIDYHHNLLLSHQKVNPKEVIVGWYSTGLGVTGGSALIH 118

Query: 467 DFYSREVQNPIHMTVDTGFTNGEASIKAFVSVNLSLGDRPLAMQFQEVPLDLRMVEAERV 646
           DFYSREV NPIH+TVDTGF+NGE +IKA+VSVNLSLGDRPLA QFQEVPLDLRMVEAER+
Sbjct: 119 DFYSREVPNPIHLTVDTGFSNGEGTIKAYVSVNLSLGDRPLAAQFQEVPLDLRMVEAERI 178

Query: 647 GFNILKTTMVDKLPNDLEGMESSMEKLLALXXXXXXXXXXXXEGRVAADNKIGRFISDTV 826
           GF++LKTTMVDK+P+DLEGME SM++LLAL            EG  A DN IGRFISDTV
Sbjct: 179 GFDVLKTTMVDKIPSDLEGMEISMQRLLALIDDVYKYVDDVVEGHTAPDNNIGRFISDTV 238

Query: 827 ASVPKIPPAAFDKXXXXXXXXXXXXXXXXXXXXXXXSLAEKLNTAAQIL 973
           AS+PK+ P  FDK                       SLAEKLNTAAQIL
Sbjct: 239 ASLPKLSPPVFDKLVNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 287


>ref|XP_004138431.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           F-like [Cucumis sativus]
           gi|449517876|ref|XP_004165970.1| PREDICTED: eukaryotic
           translation initiation factor 3 subunit F-like [Cucumis
           sativus]
          Length = 285

 Score =  398 bits (1023), Expect = e-108
 Identities = 202/278 (72%), Positives = 223/278 (80%)
 Frame = +2

Query: 140 ILQFYPLATSLIAKIHPVVIFNICDCYVRRADQAERVIGTLLGSVLPDGTVDIRNSYAVP 319
           +LQF   + +L AK+HP+VIFNICDCYVRR DQA+RVIGTLLGSVLPDGTVDIRNSYAVP
Sbjct: 8   VLQFSHSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVP 67

Query: 320 HNESSDQVALDIDYHHNMLVSHQKVNPKEVIVGWYSTGFGVTAGSALIHDFYSREVQNPI 499
           HNE SDQVALDIDYHHNML SHQKVNPKEVIVGWYSTG GVT GSALIH+FYSREV NPI
Sbjct: 68  HNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPI 127

Query: 500 HMTVDTGFTNGEASIKAFVSVNLSLGDRPLAMQFQEVPLDLRMVEAERVGFNILKTTMVD 679
           H+TVDTGF NGE +IKA++SVNLSLGDR LA QFQE+PLDLRMVEAER+GF+ILKTT +D
Sbjct: 128 HLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSID 187

Query: 680 KLPNDLEGMESSMEKLLALXXXXXXXXXXXXEGRVAADNKIGRFISDTVASVPKIPPAAF 859
           KLPNDLEGME+SME+LLAL            EG V ADN IGRF++DTVAS+PK+ PAAF
Sbjct: 188 KLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAF 247

Query: 860 DKXXXXXXXXXXXXXXXXXXXXXXXSLAEKLNTAAQIL 973
           DK                       SLAEKLNTAAQIL
Sbjct: 248 DKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285


>ref|XP_002526864.1| eukaryotic translation initiation factor 3f, eif3f, putative
           [Ricinus communis] gi|223533763|gb|EEF35495.1|
           eukaryotic translation initiation factor 3f, eif3f,
           putative [Ricinus communis]
          Length = 287

 Score =  396 bits (1018), Expect = e-108
 Identities = 204/288 (70%), Positives = 228/288 (79%), Gaps = 2/288 (0%)
 Frame = +2

Query: 116 ATNEQAGAILQFY--PLATSLIAKIHPVVIFNICDCYVRRADQAERVIGTLLGSVLPDGT 289
           A +EQ   +LQF   P +T L AK+HP+VIFNICDCYVRR DQAERVIGTLLGSVLPDGT
Sbjct: 2   AASEQT--VLQFTSAPSSTGLSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGT 59

Query: 290 VDIRNSYAVPHNESSDQVALDIDYHHNMLVSHQKVNPKEVIVGWYSTGFGVTAGSALIHD 469
           VDIRNSYAVPHNESSDQVALDIDYHHNML+SHQKVNPKEVIVGWYSTG GVT GSALIH+
Sbjct: 60  VDIRNSYAVPHNESSDQVALDIDYHHNMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHE 119

Query: 470 FYSREVQNPIHMTVDTGFTNGEASIKAFVSVNLSLGDRPLAMQFQEVPLDLRMVEAERVG 649
           FYSREV NP+H+TVDTGF NGE +IKA+VSVNLSLGDR LA QFQE+PLDLRM+EAERVG
Sbjct: 120 FYSREVPNPVHLTVDTGFRNGEGTIKAYVSVNLSLGDRQLAAQFQEIPLDLRMLEAERVG 179

Query: 650 FNILKTTMVDKLPNDLEGMESSMEKLLALXXXXXXXXXXXXEGRVAADNKIGRFISDTVA 829
           ++ILKTTMVDK+P+DLEGME SM++LLAL            EGR A DN IGR+I DTV 
Sbjct: 180 YDILKTTMVDKIPSDLEGMEVSMQRLLALIDDVYKYVDDVVEGRAAPDNSIGRYIFDTVG 239

Query: 830 SVPKIPPAAFDKXXXXXXXXXXXXXXXXXXXXXXXSLAEKLNTAAQIL 973
           ++PK+ P+AFDK                       SLAEKLNTAAQIL
Sbjct: 240 ALPKLSPSAFDKLVNNGLQDHLLLLYLSSIARTQLSLAEKLNTAAQIL 287


>ref|XP_003600862.1| Eukaryotic translation initiation factor 3 subunit F [Medicago
           truncatula] gi|217073538|gb|ACJ85129.1| unknown
           [Medicago truncatula] gi|355489910|gb|AES71113.1|
           Eukaryotic translation initiation factor 3 subunit F
           [Medicago truncatula]
          Length = 288

 Score =  385 bits (989), Expect = e-104
 Identities = 200/291 (68%), Positives = 225/291 (77%), Gaps = 3/291 (1%)
 Frame = +2

Query: 110 MAATNEQAGAILQFYPLATS---LIAKIHPVVIFNICDCYVRRADQAERVIGTLLGSVLP 280
           MA+TN     +LQF   ++S   L AK+HP+V+FNICDCYVRR DQAERVIGTLLGSVLP
Sbjct: 1   MASTNR---TVLQFSSSSSSSQSLSAKVHPLVVFNICDCYVRRPDQAERVIGTLLGSVLP 57

Query: 281 DGTVDIRNSYAVPHNESSDQVALDIDYHHNMLVSHQKVNPKEVIVGWYSTGFGVTAGSAL 460
           DGTVDIRNSYAVPHNES DQVALDI+YHHNML+SHQKVN KE+IVGWYSTG GVT GSAL
Sbjct: 58  DGTVDIRNSYAVPHNESVDQVALDIEYHHNMLLSHQKVNQKEIIVGWYSTGLGVTGGSAL 117

Query: 461 IHDFYSREVQNPIHMTVDTGFTNGEASIKAFVSVNLSLGDRPLAMQFQEVPLDLRMVEAE 640
           IH+FYSREV NPIH+TVDTGFT G  +IKA+VS NLSLGDR +A QFQE+PLDLRMVEAE
Sbjct: 118 IHEFYSREVPNPIHLTVDTGFTAGGGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAE 177

Query: 641 RVGFNILKTTMVDKLPNDLEGMESSMEKLLALXXXXXXXXXXXXEGRVAADNKIGRFISD 820
           R+GF+ILK T VDK+P+DLEGME+SME LLAL            EGRVA DNKIG+FISD
Sbjct: 178 RIGFDILKATTVDKIPSDLEGMEASMEHLLALINDIYKYVDDVVEGRVAPDNKIGKFISD 237

Query: 821 TVASVPKIPPAAFDKXXXXXXXXXXXXXXXXXXXXXXXSLAEKLNTAAQIL 973
            V S+PK+PP+ FDK                       SLAEKLNTAAQIL
Sbjct: 238 AVGSLPKLPPSDFDKLVNDSLQDHLLMVYLSSITRTQLSLAEKLNTAAQIL 288