BLASTX nr result
ID: Coptis21_contig00011823
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00011823
(1990 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI17913.3| unnamed protein product [Vitis vinifera] 531 e-148
ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera] 531 e-148
ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|2... 488 e-135
ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max] 466 e-128
dbj|BAF03051.1| DNA ligase IV [Populus nigra] 452 e-124
>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
Length = 1163
Score = 531 bits (1368), Expect = e-148
Identities = 289/588 (49%), Positives = 382/588 (64%), Gaps = 20/588 (3%)
Frame = -3
Query: 1988 FVDLVHSSNGNTQRGTGYGDFQENKPKRIKASSKGDKKIFSVVPSHFIKTDVSGVKEATC 1809
F++LVHSSNG TQRG YG Q++KPKR+K+S KG++K VVPSHF++TDV+ VK T
Sbjct: 596 FMELVHSSNGTTQRGADYGRMQDSKPKRMKSSKKGEQKTAHVVPSHFMQTDVTNVKGETL 655
Query: 1808 MFANMMFYFINVPPNRSLDSFHKMVAENGGSFSMNLNDSVTHCIAAERKGIKYQAAKLRR 1629
+F+NMMFYF+N PP SLDS HK+V ENGG+FSMNLN+SVTHC+AA+ KGIKYQAAKLR
Sbjct: 656 IFSNMMFYFVNTPPTHSLDSLHKLVVENGGTFSMNLNNSVTHCVAAQSKGIKYQAAKLRG 715
Query: 1628 DIIHYSWVLDCCAQKRLLHLQPKYFLFLADSSKTKLQSELDEFSDSYFWDLDLMDIKQLL 1449
DIIH SWV DCC+QK+LL LQPKYFLFL++ SK KLQ E+D+FSDSY+ DLD+ DIKQLL
Sbjct: 716 DIIHCSWVFDCCSQKKLLPLQPKYFLFLSEHSKKKLQEEIDKFSDSYYQDLDISDIKQLL 775
Query: 1448 KNIDRLEDRKTIDYYTRKYCPKEK-CQFQDCQIYFH-LMHPLNTDWEILLELALKRMKLE 1275
N+DR ++ KTIDYY KYCPKEK +F DC I FH + N+DWE+L +LAL+RMKLE
Sbjct: 776 SNVDRSDNSKTIDYYKNKYCPKEKWSRFHDCCICFHSSIQSSNSDWELLSKLALRRMKLE 835
Query: 1274 VSMHGGEISNKLAHATHLVVLSVPGSDVDVETFFKSLSVSDRRLLHSKRFYVVQYQWLED 1095
VSM GG++ N L+ ATHLVV SVPG D+D +S S +++ LL +K+ +VV YQWLE
Sbjct: 836 VSMGGGKVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCNKKLHVVGYQWLEG 895
Query: 1094 SFEKDRKLIEDAYSLKLDELEESNTEISKHVL--ETLSSIDDAERENISASPVKDVEQSG 921
E+ R+L E YSLK + LEESN KH + E S +D E +N+ + P K+ +Q
Sbjct: 896 CLEEGRRLQEQKYSLKPEGLEESNFGECKHDIDVEAPSVLDSVENQNLVSFPDKEGKQGR 955
Query: 920 GKPAVQEHRISTFFERNGKRKRGRPTQANMKTRTNMKRRNIRGRPGHRAAKIDENEIENS 741
GK + I +R+ KRKRGRP + K +G+ G A+ I
Sbjct: 956 GKAPPESISILASPKRDEKRKRGRPAGPSTK----------KGKAGFSQARRTRPRI--- 1002
Query: 740 ASSDDALHKDEVGSSGIHKRILEEDVGTKGNKGPVSIDTLHDDEAAEWSDKVDTTDLGGG 561
++++E +S +++ EE GN +H E E + +T +
Sbjct: 1003 -GKPPKIYENESDASDSGEKMEEEGTKMGGN------HAIHGVECKECPEIQETEIVEDS 1055
Query: 560 NNSQYTEMAERSANVHEIKREVKKNA----------------SEKLEVMVDPLEAMLLDM 429
+SQ + E+ + ++ + A +EKLEVMVDP++AMLLDM
Sbjct: 1056 ESSQRGKTEEKEVALDNVREKWLDRAQDIELDSENKVDNSKKTEKLEVMVDPVQAMLLDM 1115
Query: 428 IPSLGVEKPETTNPVFEGKKPCIDPVLEQGKKKKVSYKDVVGELLKDW 285
IPSLGV+K E+TNP+ + +KP ++ E KKKKVSYKDV G LLKDW
Sbjct: 1116 IPSLGVKKAESTNPIIDDEKPPVEQGAEPVKKKKVSYKDVAGALLKDW 1163
>ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]
Length = 1162
Score = 531 bits (1368), Expect = e-148
Identities = 289/588 (49%), Positives = 382/588 (64%), Gaps = 20/588 (3%)
Frame = -3
Query: 1988 FVDLVHSSNGNTQRGTGYGDFQENKPKRIKASSKGDKKIFSVVPSHFIKTDVSGVKEATC 1809
F++LVHSSNG TQRG YG Q++KPKR+K+S KG++K VVPSHF++TDV+ VK T
Sbjct: 595 FMELVHSSNGTTQRGADYGRMQDSKPKRMKSSKKGEQKTAHVVPSHFMQTDVTNVKGETL 654
Query: 1808 MFANMMFYFINVPPNRSLDSFHKMVAENGGSFSMNLNDSVTHCIAAERKGIKYQAAKLRR 1629
+F+NMMFYF+N PP SLDS HK+V ENGG+FSMNLN+SVTHC+AA+ KGIKYQAAKLR
Sbjct: 655 IFSNMMFYFVNTPPTHSLDSLHKLVVENGGTFSMNLNNSVTHCVAAQSKGIKYQAAKLRG 714
Query: 1628 DIIHYSWVLDCCAQKRLLHLQPKYFLFLADSSKTKLQSELDEFSDSYFWDLDLMDIKQLL 1449
DIIH SWV DCC+QK+LL LQPKYFLFL++ SK KLQ E+D+FSDSY+ DLD+ DIKQLL
Sbjct: 715 DIIHCSWVFDCCSQKKLLPLQPKYFLFLSEHSKKKLQEEIDKFSDSYYQDLDISDIKQLL 774
Query: 1448 KNIDRLEDRKTIDYYTRKYCPKEK-CQFQDCQIYFH-LMHPLNTDWEILLELALKRMKLE 1275
N+DR ++ KTIDYY KYCPKEK +F DC I FH + N+DWE+L +LAL+RMKLE
Sbjct: 775 SNVDRSDNSKTIDYYKNKYCPKEKWSRFHDCCICFHSSIQSSNSDWELLSKLALRRMKLE 834
Query: 1274 VSMHGGEISNKLAHATHLVVLSVPGSDVDVETFFKSLSVSDRRLLHSKRFYVVQYQWLED 1095
VSM GG++ N L+ ATHLVV SVPG D+D +S S +++ LL +K+ +VV YQWLE
Sbjct: 835 VSMGGGKVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCNKKLHVVGYQWLEG 894
Query: 1094 SFEKDRKLIEDAYSLKLDELEESNTEISKHVL--ETLSSIDDAERENISASPVKDVEQSG 921
E+ R+L E YSLK + LEESN KH + E S +D E +N+ + P K+ +Q
Sbjct: 895 CLEEGRRLQEQKYSLKPEGLEESNFGECKHDIDVEAPSVLDSVENQNLVSFPDKEGKQGR 954
Query: 920 GKPAVQEHRISTFFERNGKRKRGRPTQANMKTRTNMKRRNIRGRPGHRAAKIDENEIENS 741
GK + I +R+ KRKRGRP + K +G+ G A+ I
Sbjct: 955 GKAPPESISILASPKRDEKRKRGRPAGPSTK----------KGKAGFSQARRTRPRI--- 1001
Query: 740 ASSDDALHKDEVGSSGIHKRILEEDVGTKGNKGPVSIDTLHDDEAAEWSDKVDTTDLGGG 561
++++E +S +++ EE GN +H E E + +T +
Sbjct: 1002 -GKPPKIYENESDASDSGEKMEEEGTKMGGN------HAIHGVECKECPEIQETEIVEDS 1054
Query: 560 NNSQYTEMAERSANVHEIKREVKKNA----------------SEKLEVMVDPLEAMLLDM 429
+SQ + E+ + ++ + A +EKLEVMVDP++AMLLDM
Sbjct: 1055 ESSQRGKTEEKEVALDNVREKWLDRAQDIELDSENKVDNSKKTEKLEVMVDPVQAMLLDM 1114
Query: 428 IPSLGVEKPETTNPVFEGKKPCIDPVLEQGKKKKVSYKDVVGELLKDW 285
IPSLGV+K E+TNP+ + +KP ++ E KKKKVSYKDV G LLKDW
Sbjct: 1115 IPSLGVKKAESTNPIIDDEKPPVEQGAEPVKKKKVSYKDVAGALLKDW 1162
>ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|222866696|gb|EEF03827.1|
predicted protein [Populus trichocarpa]
Length = 1242
Score = 488 bits (1257), Expect = e-135
Identities = 293/658 (44%), Positives = 381/658 (57%), Gaps = 93/658 (14%)
Frame = -3
Query: 1988 FVDLVHSSNGNTQRGTGYGDFQENKPKRIKASSKGDKKIFSVVPSHFIKTDVSGVKEATC 1809
FV+LVHSSNG TQ+G GYG Q++KP IK+S KG+KK SVVPSH I+TD+S +K T
Sbjct: 604 FVELVHSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDISDIKGETL 663
Query: 1808 MFANMMFYFINVPPNRSLDSFHKMVAENGGSFSMNLNDSVTHCIAAERKGIKYQAAKLRR 1629
+F+NMMFYF+NVPP+ SL+S HKMVAENGG+FSMNLN+SVTHCIAAE KGIKYQAAKL
Sbjct: 664 IFSNMMFYFVNVPPSNSLESLHKMVAENGGTFSMNLNNSVTHCIAAESKGIKYQAAKLHG 723
Query: 1628 DIIHYSWVLDCCAQKRLLHLQPKYFLFLADSSKTKLQSELDEFSDSYFWDLDLMDIKQLL 1449
DIIHYSWVLDCC QK+LL LQPK FLFL+D SK KL E+DEFSDSY+WDLDL DIKQLL
Sbjct: 724 DIIHYSWVLDCCLQKKLLPLQPKSFLFLSDGSKKKLHEEIDEFSDSYYWDLDLSDIKQLL 783
Query: 1448 KNIDRLEDRKTIDYYTRKYCPKEKCQ-FQDCQIYFHL-MHPLNTDWEILLELALKRMKLE 1275
NI+ ED K ID +KYCP+EK F C +YFH+ L DWE LL LA +R+KLE
Sbjct: 784 SNINASEDAKAIDDLKQKYCPEEKWSLFHGCCVYFHISRESLTPDWESLLGLAFRRLKLE 843
Query: 1274 VSMHGGEISNKLAHATHLVVLSVPGSDVDVETFFKSLSVSDRRLLHSKRFYVVQYQWLED 1095
+ M GG++SN +AHATHLVVL VP SDVD + KS + +++ L +KR YV+ QWLED
Sbjct: 844 IFMGGGKVSNNIAHATHLVVLIVPASDVDFGSLVKSFTTAEKHFLLNKRLYVIGSQWLED 903
Query: 1094 SFEKDRKLIEDAYSLKLDELEESNTEISKHVLETLSSIDDAERENISASPVKDVEQSGGK 915
S E+ +KL+ED Y+LK LEESN + E L S+ D+E ++ G K
Sbjct: 904 SLERGQKLLEDTYNLKPSGLEESNCK------EVLPSVTDSE-----------AKEKGSK 946
Query: 914 PAVQEHRISTFFERNGKRKRGRPTQANMKTRT--NMKRRNIRGRPGHRAAKIDENEIENS 741
A+++ E+ RKRGRP + K + R R R ++ AKI + + S
Sbjct: 947 AALKDSNKLGSLEKETTRKRGRPAGGSTKKGKIGAGQARRTRARIVNKPAKISVEKSDES 1006
Query: 740 ASSDD--------------------------ALHKDEVGS-------------------- 699
S DD + K ++G+
Sbjct: 1007 CSHDDKNEENDMSDGNEEIHGGKPAGRPAGGSTKKGKIGAGQALRTRTRIANKPAKILEE 1066
Query: 698 ----SGIHKRILEEDVGTKGNK---GPVS--------IDTLHDDEAAEWSDKVDTTDLGG 564
S +H +EE+ ++GN+ GPVS T+ D E++ + T
Sbjct: 1067 KSEESCLHDDEIEENEMSEGNEEIHGPVSKYNLDIQQTKTVEDSESSRRDKAKEET---- 1122
Query: 563 GNNSQYTEMAERSANVHEIKR--EVKKNASEKLEVMVDPLEAMLLDMIPSLGVEKPETTN 390
+++ E +++ +V +R + EKLEVMVDP+ A+L+DMIPSLG++K ETTN
Sbjct: 1123 AEENRHEEWLDKAPDVEMSERYYDQVTEKPEKLEVMVDPVHAILMDMIPSLGMKKGETTN 1182
Query: 389 PVFEGKK----PCIDPVLEQGK----------------------KKKVSYKDVVGELL 294
P +K P P L K KKKVSYKD+ +LL
Sbjct: 1183 PTIGNEKQAEGPYAQPSLSMKKVENTTPTLDTEKPSENPSLLPVKKKVSYKDLAAKLL 1240
>ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max]
Length = 1171
Score = 466 bits (1199), Expect = e-128
Identities = 273/591 (46%), Positives = 364/591 (61%), Gaps = 23/591 (3%)
Frame = -3
Query: 1988 FVDLVHSSNGNTQRGTGYGDFQENKPKRIKASSKGDKKIFSVVPSHFIKTDVSGVKEATC 1809
F++LVHSSNG TQR T YG Q++KPKR K+S++G+KK S+VPSH I+TDVS +K +
Sbjct: 595 FIELVHSSNGTTQRDTEYGSKQDSKPKRSKSSTRGEKKNLSIVPSHLIQTDVSSIKGGSL 654
Query: 1808 MFANMMFYFINVPPNRSLDSFHKMVAENGGSFSMNLNDSVTHCIAAERKGIKYQAAKLRR 1629
+F+NMMFYF+NVP + SL+S HK++AENGG+FSMNLN+SVTHC+AA+ KG K++AAK
Sbjct: 655 IFSNMMFYFVNVPLSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHG 714
Query: 1628 DIIHYSWVLDCCAQKRLLHLQPKYFLFLADSSKTKLQSELDEFSDSYFWDLDLMDIKQLL 1449
DIIHYSWVLDC QK+L+ LQPKYFLFL++ +K KLQ E+DEFSD+Y+ DLDL IKQLL
Sbjct: 715 DIIHYSWVLDCYDQKKLVCLQPKYFLFLSELTKKKLQEEIDEFSDTYYLDLDLGVIKQLL 774
Query: 1448 KNIDRLEDRKTIDYYTRKYCPKEKCQ-FQDCQIYFHLMHP-LNTDWEILLELALKRMKLE 1275
NIDR ED T+D+Y +KYCPK+K F C IYFH P L +DW +L+LA++R+KLE
Sbjct: 775 SNIDRSEDVSTVDHYRKKYCPKDKWSFFYGCSIYFHSAIPSLKSDWHFILQLAVRRLKLE 834
Query: 1274 VSMHGGEISNKLAHATHLVVLSVPGSDVDVETFFKSLSVSDRRLLHSKRFYVVQYQWLED 1095
V M GG++++ L ATHLVVL VPG D E S + R++L SKR ++V+ QWLED
Sbjct: 835 VLMGGGKVTSNLTCATHLVVLLVPGYQTDFEQIQSSFTSVKRKILRSKRLHIVKSQWLED 894
Query: 1094 SFEKDRKLIEDAYSLKLDELEESNTEISKHV--LETLSSIDDAERENISASPVKDVEQSG 921
+ ++L ED+YSLK +EE+ E + LE S D+ E +NIS S K ++Q
Sbjct: 895 CSDSCQRLPEDSYSLKPWGIEETTAEDCELELGLEAHQSGDNVEDQNISFSD-KGIQQRS 953
Query: 920 GKPAVQEHRISTFFERNGKRKRGRPTQANM-KTRTNMKRRNIRGRP--GHRAAKIDENEI 750
K A ++ E+ GKRKRGRP + + K + ++ R RP + AKI E E
Sbjct: 954 SKAASEDSMALVSQEKGGKRKRGRPAGSGIKKVKQPAVKQARRARPQIAKKPAKICEYE- 1012
Query: 749 ENSASSDDALHKDEVGSSGIHKRILEEDVGT--------KGNKGPVSIDTLHDDEAAEWS 594
DE S G KR +E+++ T K P + + + AE
Sbjct: 1013 ----------SSDESDSHG--KRPIEQEIDTRAGSLDFYKKRSEPQETEKRENVQVAEIE 1060
Query: 593 DKVDTTDLGGG---NNSQYTEMAERSANVHEIKREVKKNASEKLEVMVDPLEAMLLDMIP 423
+ L N+++ M + + E +EKLE+ DPL+AML DMIP
Sbjct: 1061 KNSEQNKLDKQKDLNDNERERMLVPEIEMSDRHNEQNNEVTEKLEISADPLQAMLFDMIP 1120
Query: 422 SLGVEKPE--TTNPVFEGKKPCIDPVLEQ---GKKKKVSYKDVVGELLKDW 285
SL +K E V E K P + KKKKVSYKDV ELLKDW
Sbjct: 1121 SLATQKVEQPMNRSVREEKLPETSNAEAEPMTTKKKKVSYKDVASELLKDW 1171
>dbj|BAF03051.1| DNA ligase IV [Populus nigra]
Length = 1319
Score = 452 bits (1162), Expect = e-124
Identities = 237/443 (53%), Positives = 306/443 (69%), Gaps = 9/443 (2%)
Frame = -3
Query: 1988 FVDLVHSSNGNTQRGTGYGDFQENKPKRIKASSKGDKKIFSVVPSHFIKTDVSGVKEATC 1809
FV+LVHSSNG TQ+G GYGD Q++KP IK+S KG+KK SVVPSH I+TD+S +K T
Sbjct: 604 FVELVHSSNGTTQKGKGYGDVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDISDIKGETL 663
Query: 1808 MFANMMFYFINVPPNRSLDSFHKMVAENGGSFSMNLNDSVTHCIAAERKGIKYQAAKLRR 1629
+F+NMMFY +NVPP+ SL+S HKMVAENGG+FSMNLN+SVTHCIAAE KGIKYQAAKL
Sbjct: 664 IFSNMMFYVVNVPPSNSLESLHKMVAENGGTFSMNLNNSVTHCIAAESKGIKYQAAKLHG 723
Query: 1628 DIIHYSWVLDCCAQKRLLHLQPKYFLFLADSSKTKLQSELDEFSDSYFWDLDLMDIKQLL 1449
DIIHYSWVLDCC QK+LL LQPK FLFL+D SK KL E+DEFSDSY+WDLDL DIKQLL
Sbjct: 724 DIIHYSWVLDCCLQKKLLPLQPKSFLFLSDGSKKKLHEEIDEFSDSYYWDLDLSDIKQLL 783
Query: 1448 KNIDRLEDRKTIDYYTRKYCPKEKCQ-FQDCQIYFHL-MHPLNTDWEILLELALKRMKLE 1275
NI+ ED K ID +KYCP+EK F C +YFH+ L DWE LL LA +R+KLE
Sbjct: 784 SNINASEDGKAIDDLKQKYCPEEKWSLFHGCCVYFHISRESLTPDWESLLGLAFRRLKLE 843
Query: 1274 VSMHGGEISNKLAHATHLVVLSVPGSDVDVETFFKSLSVSDRRLLHSKRFYVVQYQWLED 1095
+ M GG++SN +AHATHLVVL+VP SDVD + KS + +++ L +KR YV+ QWLED
Sbjct: 844 IFMGGGKVSNNIAHATHLVVLNVPASDVDFGSLVKSFTTAEKHFLLNKRLYVIGSQWLED 903
Query: 1094 SFEKDRKLIEDAYSLKLDELEESNTE--ISKHVLETLSSIDD-AERENISASPVKDVEQS 924
S E+ +KL+ED Y+LK LEESN + + +E + I D A+ E + + + ++
Sbjct: 904 SLERGQKLLEDTYNLKPSGLEESNCKEIVCDLDMEEATPISDGAKNERLPSVTDSEAKEK 963
Query: 923 GGKPAVQEHRISTFFERNGKRKRGRPTQANMKTRT--NMKRRNIRGRPGHRAAKIDENEI 750
G K A+++ E+ RKRGRP + K + + R R ++ AKI +
Sbjct: 964 GSKAALKDSNKLGSLEKETTRKRGRPAGGSTKKGKIGAGQAQRTRARIVNKPAKISVEKS 1023
Query: 749 ENSASSDDALHKDEV--GSSGIH 687
+ S S DD ++++ G+ IH
Sbjct: 1024 DESCSQDDKNEENDMSDGNEEIH 1046
Score = 81.3 bits (199), Expect = 9e-13
Identities = 71/236 (30%), Positives = 103/236 (43%), Gaps = 40/236 (16%)
Frame = -3
Query: 881 FERNGKRKRGRPTQANMKTRTNMKRRNIRGRPGHRAAKIDENEIENSASSDDALHKDEV- 705
+E +G R G T+ K RR R R ++ AKI E + E S DD + ++E+
Sbjct: 1104 YEIHGGRPAGGSTRKG-KIGAGQARRT-RTRIANKPAKILEEKSEESCLHDDEIEENEMS 1161
Query: 704 -GSSGIH------------KRILEEDVGTKGNKGPVSIDTLHDDEAAEWSDKVDTTDLGG 564
G+ IH +++E+ ++ +G T ++ EW DK ++ G
Sbjct: 1162 EGNEEIHGPDSKYNLDIQQTKMVEDSESSR--RGKAKEATAEENRHEEWLDKAPDVEMSG 1219
Query: 563 GNNSQYTEMAERSANVHEIKREVKKNASEKLEVMVDPLEAMLLDMIPSLGVEKPETTNPV 384
Q TE E KLEVMVDP+ A+L+DMIPSLG++K ETTNP
Sbjct: 1220 RYYDQVTEKPE------------------KLEVMVDPVHAILMDMIPSLGMKKGETTNPT 1261
Query: 383 FEGKKPC----------------IDPVLEQGK----------KKKVSYKDVVGELL 294
+ +K P L+ K KKKVSYKD+ +LL
Sbjct: 1262 IDNEKQAEGPYAQSSLSMKKVENTTPTLDTEKPAENPSLLPVKKKVSYKDLAAKLL 1317