BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011716
         (939 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518369.1| RNA exonuclease, putative [Ricinus communis]...   266   5e-69
ref|NP_566499.1| exonuclease-like protein [Arabidopsis thaliana]...   264   2e-68
ref|XP_002300407.1| predicted protein [Populus trichocarpa] gi|2...   263   3e-68
gb|ADN33800.1| RNA exonuclease [Cucumis melo subsp. melo]             262   1e-67
ref|XP_002282870.1| PREDICTED: RNA exonuclease 4-like [Vitis vin...   262   1e-67

>ref|XP_002518369.1| RNA exonuclease, putative [Ricinus communis]
           gi|223542464|gb|EEF44005.1| RNA exonuclease, putative
           [Ricinus communis]
          Length = 299

 Score =  266 bits (680), Expect = 5e-69
 Identities = 131/174 (75%), Positives = 146/174 (83%)
 Frame = +3

Query: 48  LTPTNTDCSLTDTIAMDCEMVGVSSQGNKSALARVTLVNAWGNIVYDEFVRPMERVVDFR 227
           LTPTN D SLTD IAMDCEMVG+  QGNKSAL RVTLVN WGN++YDEFVRP+ERVVDFR
Sbjct: 94  LTPTNDDFSLTDAIAMDCEMVGIG-QGNKSALGRVTLVNEWGNVIYDEFVRPIERVVDFR 152

Query: 228 TTISGIRPRDMRKAKDFGDVQTKVAELVKGRILVGHALHNDFKALLLSHPRNHIRDTSEY 407
           T ISGIRP+ +RKAKDF  VQ KVAEL++GRILVGHAL ND K LLL HP+  +RDT EY
Sbjct: 153 TKISGIRPQHLRKAKDFPAVQKKVAELIRGRILVGHALSNDLKVLLLCHPKKDLRDTVEY 212

Query: 408 QPFLKEGRRRALKSLALEFLNAKIQDGAHCPVDDARAAMLLYQKHKKAWERSVK 569
           QPFLKE RRRAL+ LA EFL  KIQDG HC ++DARA MLLYQK+KK WE+SVK
Sbjct: 213 QPFLKERRRRALRHLAAEFLGVKIQDGEHCSIEDARATMLLYQKNKKEWEKSVK 266


>ref|NP_566499.1| exonuclease-like protein [Arabidopsis thaliana]
           gi|21593535|gb|AAM65502.1| exonuclease, putative
           [Arabidopsis thaliana] gi|90186238|gb|ABD91495.1|
           At3g15080 [Arabidopsis thaliana]
           gi|110737668|dbj|BAF00773.1| putative exonuclease
           [Arabidopsis thaliana] gi|195971099|gb|ACG60894.1|
           exonuclease domain-containing protein [Arabidopsis
           thaliana] gi|332642093|gb|AEE75614.1| exonuclease-like
           protein [Arabidopsis thaliana]
          Length = 275

 Score =  264 bits (675), Expect = 2e-68
 Identities = 129/177 (72%), Positives = 149/177 (84%)
 Frame = +3

Query: 39  ISVLTPTNTDCSLTDTIAMDCEMVGVSSQGNKSALARVTLVNAWGNIVYDEFVRPMERVV 218
           I+ L P N D SLTD +AMDCEMVGVS QG KSAL RVTLVN WGN++YDEFVRP+E VV
Sbjct: 68  INPLAPVNDDSSLTDEVAMDCEMVGVS-QGTKSALGRVTLVNKWGNVLYDEFVRPVEHVV 126

Query: 219 DFRTTISGIRPRDMRKAKDFGDVQTKVAELVKGRILVGHALHNDFKALLLSHPRNHIRDT 398
           DFRT+ISGIRPRD+RKAKDF   QTKVAEL+KG+ILVGHALHND KALLL+HP+  IRDT
Sbjct: 127 DFRTSISGIRPRDLRKAKDFRVAQTKVAELIKGKILVGHALHNDLKALLLTHPKKDIRDT 186

Query: 399 SEYQPFLKEGRRRALKSLALEFLNAKIQDGAHCPVDDARAAMLLYQKHKKAWERSVK 569
            EYQPFLK   R++LK LA E L A IQ+G HCP+DDARAAM+LYQK++K WE++VK
Sbjct: 187 GEYQPFLKGKTRKSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNRKEWEKTVK 243


>ref|XP_002300407.1| predicted protein [Populus trichocarpa] gi|222847665|gb|EEE85212.1|
           predicted protein [Populus trichocarpa]
          Length = 274

 Score =  263 bits (673), Expect = 3e-68
 Identities = 128/177 (72%), Positives = 148/177 (83%)
 Frame = +3

Query: 39  ISVLTPTNTDCSLTDTIAMDCEMVGVSSQGNKSALARVTLVNAWGNIVYDEFVRPMERVV 218
           I+ L PTN D S+TD IAMDCEMVGV  QGN+SAL RVTLVN WGN++YDEFVRP+ERV 
Sbjct: 66  INPLIPTNDDFSVTDAIAMDCEMVGVG-QGNRSALGRVTLVNQWGNVLYDEFVRPVERVA 124

Query: 219 DFRTTISGIRPRDMRKAKDFGDVQTKVAELVKGRILVGHALHNDFKALLLSHPRNHIRDT 398
           DFRT ISGIRPRD+RKA+DF   Q KVA L+KGRILVGHAL ND KALLL HP+  +RDT
Sbjct: 125 DFRTQISGIRPRDLRKARDFSTAQKKVAVLIKGRILVGHALSNDLKALLLGHPKKDLRDT 184

Query: 399 SEYQPFLKEGRRRALKSLALEFLNAKIQDGAHCPVDDARAAMLLYQKHKKAWERSVK 569
           SEYQPFLK  RR+AL+ LA EFL AKIQ G HCP++DARAAMLLYQ++KK WE+S++
Sbjct: 185 SEYQPFLKGRRRKALRHLAAEFLGAKIQSGEHCPIEDARAAMLLYQRNKKEWEKSIR 241


>gb|ADN33800.1| RNA exonuclease [Cucumis melo subsp. melo]
          Length = 265

 Score =  262 bits (669), Expect = 1e-67
 Identities = 128/176 (72%), Positives = 149/176 (84%)
 Frame = +3

Query: 42  SVLTPTNTDCSLTDTIAMDCEMVGVSSQGNKSALARVTLVNAWGNIVYDEFVRPMERVVD 221
           ++L P N D SLTD +AMDCEMVGV  QGNKSAL RVTLVN WGN++YDEFVRP+ERVVD
Sbjct: 66  NILIPVNDDFSLTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVD 124

Query: 222 FRTTISGIRPRDMRKAKDFGDVQTKVAELVKGRILVGHALHNDFKALLLSHPRNHIRDTS 401
           FRT ISGIRP D++KAKDF  VQ +VAEL+KG+ILVGHAL ND KALLLSHP+N +RDTS
Sbjct: 125 FRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDVRDTS 184

Query: 402 EYQPFLKEGRRRALKSLALEFLNAKIQDGAHCPVDDARAAMLLYQKHKKAWERSVK 569
           EYQ F KEG +RAL+ LA EFL  +IQ+G HCPV+DAR+AMLLYQK +K WE+SVK
Sbjct: 185 EYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240


>ref|XP_002282870.1| PREDICTED: RNA exonuclease 4-like [Vitis vinifera]
          Length = 277

 Score =  262 bits (669), Expect = 1e-67
 Identities = 127/177 (71%), Positives = 152/177 (85%), Gaps = 1/177 (0%)
 Frame = +3

Query: 42  SVLTPTNTDCSLTDTIAMDCEMVGVSSQGNKSALARVTLVNAWGNIVYDEFVRPMERVVD 221
           ++L PTNTD SLTD +AMDCEMVGV S+GNKSAL RVTLVN WGN++YDE+VRP+E VVD
Sbjct: 68  NILIPTNTDSSLTDAVAMDCEMVGVGSEGNKSALGRVTLVNKWGNVIYDEYVRPVEWVVD 127

Query: 222 FRTTISGIRPRDMRKAKDFGDVQTKVAELVKGRILVGHALHNDFKALLLSHPRNHIRDTS 401
           FRT ISGIRPRD++KAKDF  VQ +VAEL+KGR+LVGHAL ND KALLLSHP+  +RDTS
Sbjct: 128 FRTEISGIRPRDLKKAKDFQTVQRQVAELIKGRLLVGHALRNDLKALLLSHPKVDMRDTS 187

Query: 402 EYQPFLKEGRRR-ALKSLALEFLNAKIQDGAHCPVDDARAAMLLYQKHKKAWERSVK 569
           E + FLKE RRR AL+ LA EFL  KIQ+G HCPV+DARAAMLLYQ+++K WE+++K
Sbjct: 188 ECELFLKEERRRVALRHLAAEFLGVKIQNGEHCPVEDARAAMLLYQRNRKQWEKNIK 244