BLASTX nr result
ID: Coptis21_contig00011708
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00011708
(1661 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI17549.3| unnamed protein product [Vitis vinifera] 359 1e-96
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s... 347 4e-93
ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2... 330 9e-88
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 311 4e-82
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s... 311 4e-82
>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 359 bits (922), Expect = 1e-96
Identities = 231/538 (42%), Positives = 308/538 (57%), Gaps = 63/538 (11%)
Frame = +3
Query: 3 SVDNNS-NYXXXXXXVPMITKQTLS-SWRPPLTTSYAVGVLVGNKLHLNPVHAVVQLRPS 176
S+D +S NY + KQTLS SW+PP TT Y VGVL+GNKLHLNP+HAVVQLRPS
Sbjct: 158 SIDVDSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPS 217
Query: 177 MEHLKSGGS---NEIT-------------EVKAIGSSKQHGKLVKSSTEQVTDVEESWIP 308
ME+L SGG+ N +T E +++GS K+ K++ EQ TD ESW+P
Sbjct: 218 MEYLSSGGAKRKNNVTGDTNSAVKLEVSNEEESVGSLKKQNKIMGILDEQNTDAAESWVP 277
Query: 309 LDYYGMDSSANSLSTRYRQKMTSQESFEIQFSMSSYGYVNSLCP-GSTTDNDRYRIL-KR 482
L Y+ SS + S RY QKM ++++ IQF MS Y YVNSLCP G + D++R + L +R
Sbjct: 278 LKYH---SSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRR 334
Query: 483 SLLSLPLAEKFKRWFLEGPPLNRFSALKHLAPDDSNEDVLEVLQRHACVVQGLWVARSSL 662
LLS+PL E+FK EGPP++RFSALKH APD+S EDVL VL +HA +VQGLWV +SSL
Sbjct: 335 FLLSMPLEERFKTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSL 394
Query: 663 LELKGDDA--IARDYILYSFNNDIVIRFKQLDDYYQRFKEAFSRYLKHFAVHRAHCEDWK 836
L G +ARDYIL F+ +I + Q+D +A +L AV R DWK
Sbjct: 395 LFPGGQGVAPLARDYILLLFSKGPLINYSQVD-VPGSLNKALKGFLSILAVERPSFRDWK 453
Query: 837 LKEAADATFVKHYPDIVKKQKEAWEKQEPTILDNI--------------KPR-ATKTARL 971
KE D +F+K +PDIV++Q+ WE E I D I KP A KT
Sbjct: 454 FKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTS 513
Query: 972 TKSKIPKNSVIGDHGVKIGVNSIPSSGPMTVPDATQEA--QENIRSLQL----------- 1112
TKS + +G + ++ + +P A +E + S QL
Sbjct: 514 TKSD---GATRATNGTPVRRTAMSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVS 570
Query: 1113 KQTGLKAGGR----GVRGADSGQASVN---------IHGVFVPKSSGNANLDPIRGVVID 1253
K T K R GAD+ Q ++ +HGV+V K+S ++ +P+R VV+D
Sbjct: 571 KSTSPKVDPRTFVAAAYGADAPQEELHAIISKYATTVHGVYVWKTSEHSEHNPLRKVVVD 630
Query: 1254 LFCAKEPDAKLKKAEIVEAAKIQLKRTIDDKELKPVLKQLCVSKGGSWVLRKGDGDPK 1427
LFC KEP+AKLK+A+I+EAAKI LK+ I E V+ +LC S+G WVL+ GDG PK
Sbjct: 631 LFCGKEPNAKLKRADIMEAAKIALKKEITTHEYNKVVSELCESRGSLWVLKSGDGKPK 688
>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
vinifera]
Length = 672
Score = 347 bits (891), Expect = 4e-93
Identities = 225/524 (42%), Positives = 300/524 (57%), Gaps = 49/524 (9%)
Frame = +3
Query: 3 SVDNNS-NYXXXXXXVPMITKQTLS-SWRPPLTTSYAVGVLVGNKLHLNPVHAVVQLRPS 176
S+D +S NY + KQTLS SW+PP TT Y VGVL+GNKLHLNP+HAVVQLRPS
Sbjct: 158 SIDVDSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPS 217
Query: 177 MEHLKSGGSNEITEVKAIGSSKQHGKLVKSSTEQVTDV--EESWIPLDYYGMDSSANSLS 350
ME+L SGG+ V G + KL S+ E+ ++SW+PL Y+ SS + S
Sbjct: 218 MEYLSSGGAKRKNNVT--GDTNSAVKLEVSNEEESVGSLKKQSWVPLKYH---SSESDFS 272
Query: 351 TRYRQKMTSQESFEIQFSMSSYGYVNSLCP-GSTTDNDRYRIL-KRSLLSLPLAEKFKRW 524
RY QKM ++++ IQF MS Y YVNSLCP G + D++R + L +R LLS+PL E+FK
Sbjct: 273 ARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKTL 332
Query: 525 FLEGPPLNRFSALKHLAPDDSNEDVLEVLQRHACVVQGLWVARSSLLELKGDDA--IARD 698
EGPP++RFSALKH APD+S EDVL VL +HA +VQGLWV +SSLL G +ARD
Sbjct: 333 LCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAPLARD 392
Query: 699 YILYSFNNDIVIRFKQLDDYYQRFKEAFSRYLKHFAVHRAHCEDWKLKEAADATFVKHYP 878
YIL F+ +I + Q+D +A +L AV R DWK KE D +F+K +P
Sbjct: 393 YILLLFSKGPLINYSQVD-VPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVSFMKLHP 451
Query: 879 DIVKKQKEAWEKQEPTILDNI--------------KPR-ATKTARLTKSKIPKNSVIGDH 1013
DIV++Q+ WE E I D I KP A KT TKS + +
Sbjct: 452 DIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIANKTGTSTKSD---GATRATN 508
Query: 1014 GVKIGVNSIPSSGPMTVPDATQEA--QENIRSLQL-----------KQTGLKAGGR---- 1142
G + ++ + +P A +E + S QL K T K R
Sbjct: 509 GTPVRRTAMSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPRTFVA 568
Query: 1143 GVRGADSGQASVN---------IHGVFVPKSSGNANLDPIRGVVIDLFCAKEPDAKLKKA 1295
GAD+ Q ++ +HGV+V K+S ++ +P+R VV+DLFC KEP+AKLK+A
Sbjct: 569 AAYGADAPQEELHAIISKYATTVHGVYVWKTSEHSEHNPLRKVVVDLFCGKEPNAKLKRA 628
Query: 1296 EIVEAAKIQLKRTIDDKELKPVLKQLCVSKGGSWVLRKGDGDPK 1427
+I+EAAKI LK+ I E V+ +LC S+G WVL+ GDG PK
Sbjct: 629 DIMEAAKIALKKEITTHEYNKVVSELCESRGSLWVLKSGDGKPK 672
>ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1|
predicted protein [Populus trichocarpa]
Length = 667
Score = 330 bits (845), Expect = 9e-88
Identities = 217/523 (41%), Positives = 298/523 (56%), Gaps = 49/523 (9%)
Frame = +3
Query: 3 SVDNNSNYXXXXXXVPMITKQTLSS-WRPPLTTSYAVGVLVGNKLHLNPVHAVVQLRPSM 179
S+D+ NY + KQTLSS W PP T YAVGVL+GNKLHLNP+HAVVQLRPSM
Sbjct: 166 SIDDTKNYDPDIASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRPSM 225
Query: 180 EHLKSGGSN---------EITEVKAIGSSKQHGKLVKSSTEQVTDVEESWIPLDYYGMDS 332
++L SG S + E K +G K+ K + S EQ DVEESWIPL Y+G
Sbjct: 226 DYLSSGNSKGKKNATSGEDSNEGKPLGLPKKQSKQMSSGNEQKPDVEESWIPLKYHG--- 282
Query: 333 SANSLSTRYRQKMTSQESFEIQFSMSSYGYVNSLCPGSTTDNDRYR-ILKRSLLSLPLAE 509
S + LS+RY Q M + ES I+F+M+ Y Y++SLCPG + +N + +R LLSLPL E
Sbjct: 283 SKSDLSSRYLQNMVAPESSTIEFAMNPYDYMSSLCPGISNNNIKLNGPSRRVLLSLPLEE 342
Query: 510 KFKRWFLEGPPLNRFSALKHLAPDDSNEDVLEVLQRHACVVQGLWVARSSLL--ELKGDD 683
+ KR FLEGPP++RF+AL+HL P+DS ED+L VLQ + +VQGLWV ++SLL K +
Sbjct: 343 RIKRLFLEGPPIHRFAALRHLIPNDSIEDLLIVLQEYGQLVQGLWVPKTSLLFPNPKPTE 402
Query: 684 AI---ARDYILYSFNNDIVIRFKQLDDYYQRFKEAFSRYLKHFAVHRAHCEDWKLKEAAD 854
+ ARDYIL F+ +V+ +L+ + +L FAV R +DWK KE D
Sbjct: 403 KVKLAARDYILLLFSKSLVVTPSELNVPMKPL--ILKSFLNIFAVERPSFKDWKFKENVD 460
Query: 855 ATFVKHYPDIVKKQKEAWE-----------KQEPTILDNI--KPRAT---KTARLTKSKI 986
FV+ YPDIV+KQ++AWE + ++ N+ KP+ T +T + +
Sbjct: 461 TLFVELYPDIVRKQEQAWEVMGKNISAAFDRAGKSVSKNVITKPKKTMTDETREALRKAL 520
Query: 987 PKNSVIGDHGV-KIGVNSIPSSGPMTVPDATQEAQENIRSLQLKQTGL-KAGGRGVRGAD 1160
PK V+ H V + G I + +R L + Q+ L KA R A
Sbjct: 521 PK--VLQTHKVCRYGFQMI---------------CQGLRQLAISQSTLPKADPRIAVAAA 563
Query: 1161 SG-------------QASVNIHGVFVPKSS-GNANLDPI-RGVVIDLFCAKEPDAKLKKA 1295
SG + + NIHG +V KSS + + DP+ R VVI LF A+ P+A +KK+
Sbjct: 564 SGAEAPPEELQEVISEVATNIHGFYVLKSSPEHPDFDPLSRKVVIGLFLARGPNANIKKS 623
Query: 1296 EIVEAAKIQLKRTIDDKELKPVLKQLCVSKGGSWVLRKGDGDP 1424
E+ AA+++LKR + E V+ LC SKG +WVL+ GDG P
Sbjct: 624 EVQAAARLELKREPSNSEYIKVMTDLCESKGSAWVLKSGDGKP 666
>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC5-like [Cucumis sativus]
Length = 702
Score = 311 bits (796), Expect = 4e-82
Identities = 206/527 (39%), Positives = 289/527 (54%), Gaps = 56/527 (10%)
Frame = +3
Query: 15 NSNYXXXXXXVPMITKQTL-SSWRPPLTTSYAVGVLVGNKLHLNPVHAVVQLRPSMEHLK 191
++NY + KQTL SSW+PPL TSYAVG+L+GNKLHLNPVHAVVQLRPS EHL
Sbjct: 180 SNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLN 239
Query: 192 SGG--------------SNEITEVKAIGSSKQHGKLVKSSTEQVTDVEESWIPLDYYGMD 329
SGG S E +V + G+S++ K STE T EE WIPL YYG++
Sbjct: 240 SGGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLE 299
Query: 330 SSANSLSTRYRQKMTSQESFEIQFSMSSYGYVNSLCPGSTTDNDRYR-ILKRSLLSLPLA 506
S LSTR+ Q M SQ +QFSMS + Y++SLCPG++T ++ + K+ LLSL L
Sbjct: 300 S---DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLE 356
Query: 507 EKFKRWFLEGPPLNRFSALKHLAPDDSNEDVLEVLQRHACVVQGLWVARS-SLLELKGDD 683
E+ K+ EGPP+ RFSALKH APD E+ +E LQ++A +VQGLWV +S L+ G
Sbjct: 357 ERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSG 416
Query: 684 AIARDYILYSFNNDIVIRFKQLDDYYQRFKEAFSRYLKHFAVHRAHCEDWKLKEAADATF 863
ARD++L+ F+ + V+ Q+ + + ++ +L F V R +DWK KE D F
Sbjct: 417 RCARDFVLFLFSKNPVVSSSQI-NVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLF 475
Query: 864 VKHYPDIVKKQKEAWEKQEP--TILDNIKPRATKTARLTK-SKIPK--NSVIGDHGVKIG 1028
+ ++ I +KQ+E W E T L +IK A K +PK V D
Sbjct: 476 LSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKS 535
Query: 1029 VNS-IPSSGPMT------VPDATQEAQEN------------IRSLQLKQTGL-KAGGR-- 1142
N+ + G M+ +P A Q+ +N +R L + Q+ L KA R
Sbjct: 536 SNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMA 595
Query: 1143 --GVRGADS---------GQASVNIHGVFVPKSS-GNANLDPIRGVVIDLFCAKEPDAKL 1286
G D+ Q + IHG++V SS + DP+R VVI L + P A L
Sbjct: 596 VAAAYGVDAPPDELXKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVL 655
Query: 1287 KKAEIVEAAKIQLKRTIDDKELKPVLKQLCVSKGGSWVLRKGDGDPK 1427
KKA+++EA+K +L R I+ E V+ ++C+S G SW L+ GDG+ +
Sbjct: 656 KKADVLEASKHELGRAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 702
>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
sativus]
Length = 702
Score = 311 bits (796), Expect = 4e-82
Identities = 206/527 (39%), Positives = 289/527 (54%), Gaps = 56/527 (10%)
Frame = +3
Query: 15 NSNYXXXXXXVPMITKQTL-SSWRPPLTTSYAVGVLVGNKLHLNPVHAVVQLRPSMEHLK 191
++NY + KQTL SSW+PPL TSYAVG+L+GNKLHLNPVHAVVQLRPS EHL
Sbjct: 180 SNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLN 239
Query: 192 SGG--------------SNEITEVKAIGSSKQHGKLVKSSTEQVTDVEESWIPLDYYGMD 329
SGG S E +V + G+S++ K STE T EE WIPL YYG++
Sbjct: 240 SGGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLE 299
Query: 330 SSANSLSTRYRQKMTSQESFEIQFSMSSYGYVNSLCPGSTTDNDRYR-ILKRSLLSLPLA 506
S LSTR+ Q M SQ +QFSMS + Y++SLCPG++T ++ + K+ LLSL L
Sbjct: 300 S---DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLE 356
Query: 507 EKFKRWFLEGPPLNRFSALKHLAPDDSNEDVLEVLQRHACVVQGLWVARS-SLLELKGDD 683
E+ K+ EGPP+ RFSALKH APD E+ +E LQ++A +VQGLWV +S L+ G
Sbjct: 357 ERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSG 416
Query: 684 AIARDYILYSFNNDIVIRFKQLDDYYQRFKEAFSRYLKHFAVHRAHCEDWKLKEAADATF 863
ARD++L+ F+ + V+ Q+ + + ++ +L F V R +DWK KE D F
Sbjct: 417 RCARDFVLFLFSKNPVVSSSQI-NVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLF 475
Query: 864 VKHYPDIVKKQKEAWEKQEP--TILDNIKPRATKTARLTK-SKIPK--NSVIGDHGVKIG 1028
+ ++ I +KQ+E W E T L +IK A K +PK V D
Sbjct: 476 LSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKS 535
Query: 1029 VNS-IPSSGPMT------VPDATQEAQEN------------IRSLQLKQTGL-KAGGR-- 1142
N+ + G M+ +P A Q+ +N +R L + Q+ L KA R
Sbjct: 536 SNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMA 595
Query: 1143 --GVRGADS---------GQASVNIHGVFVPKSS-GNANLDPIRGVVIDLFCAKEPDAKL 1286
G D+ Q + IHG++V SS + DP+R VVI L + P A L
Sbjct: 596 VAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVL 655
Query: 1287 KKAEIVEAAKIQLKRTIDDKELKPVLKQLCVSKGGSWVLRKGDGDPK 1427
KKA+++EA+K +L R I+ E V+ ++C+S G SW L+ GDG+ +
Sbjct: 656 KKADVLEASKHELGRAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 702