BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011641
         (2372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    81   1e-12
ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula] g...    74   1e-10
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    70   2e-09
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    68   1e-08
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    64   2e-07

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 81.3 bits (199), Expect = 1e-12
 Identities = 43/127 (33%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
 Frame = -1

Query: 554  WLAPLPHMMKANTDGSSLGNSGRAGWGTIFGDAKRVFKLVYSKGLGINNNYFAECLAILG 375
            W  P P ++K NTDGS +G  G A  G +F D+   F   +S  +G+ + + AE LA + 
Sbjct: 1015 WKNPSPPLLKVNTDGSVVG--GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFIL 1072

Query: 374  TIELAIERN*RHLWIESDSQAAIKAFTSNN-IPWQMQNKWRRCKWMFIQLILSHT*REAN 198
             +E A     R+LW+ESDS +A+  F++++ + W ++N+W   + + IQ+I SH   E N
Sbjct: 1073 ALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLLRNRWHNAQRLGIQVISSHILHEGN 1132

Query: 197  FAGNSIS 177
               ++++
Sbjct: 1133 RCADNLA 1139


>ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula]
           gi|355506707|gb|AES87849.1| GDSL esterase/lipase
           [Medicago truncatula]
          Length = 1004

 Score = 74.3 bits (181), Expect = 1e-10
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
 Frame = -1

Query: 596 IVNLGCAPHIKPCKWLAPLPHMMKANTDGSSLGNSGRAGWGTIFGDAKRVFKLVYSKGLG 417
           +VN     +I    W       +K NTDG+S   S   G   +F D    F   ++K LG
Sbjct: 211 VVNQATIVNIISTIWYNRNQRWIKFNTDGASTATSSSCGG--VFRDQNANFLSCFAKNLG 268

Query: 416 INNNYFAECLAILGTIELAIERN*RHLWIESDSQAAIKAFTS-NNIPWQMQNKWRRCKWM 240
             + Y  E  AI+  +E+A +RN R++WIESDS   + AF   + IP +++N+W  C+ +
Sbjct: 269 GGSAYQPELAAIMRVVEIAYQRNWRNIWIESDSALVVMAFKKMSMIPCRLRNRWINCRKL 328

Query: 239 FIQL--ILSHT*REANFAGNSISGQWQK*VRILEMNVILMYEGIPPYLHKW 93
             ++  +++H  RE N   + ++ +       L++  + ++  +P +++ +
Sbjct: 329 LCRMNFVITHIYREDNRCADKLASKG------LDIEGVTIWLNMPDFINNF 373


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 70.5 bits (171), Expect = 2e-09
 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
 Frame = -1

Query: 569 IKPCK---WLAPLPHMMKANTDGSSLGNSGRAGWGTIFGDAKRVFKLVYSKGLGINNNYF 399
           + PC+   W+ P    MK N DGS +G+      G IF  ++ +F   +++ +G      
Sbjct: 237 VNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALE 296

Query: 398 AECLAILGTIELAIERN*RHLWIESDSQAAIKAFTSN-NIPWQMQNKWRRCKWM--FIQL 228
           AE  A +  IE A E +  ++WIE+DS   I+AF  N  +PW+M  +W  C      I+ 
Sbjct: 297 AEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRSIRS 356

Query: 227 ILSHT*REANFAGNSISGQWQ 165
           + +H  RE N   ++++   Q
Sbjct: 357 LCTHVNREGNLVADALAKNGQ 377


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 67.8 bits (164), Expect = 1e-08
 Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
 Frame = -1

Query: 530 MKANTDGSSLGNSGRAGWGTIFGDAKRVFKLVYSKGLGINNNYFAECLAILGTIELAIER 351
           +K N DGS+ G       G +F + +      +++ +G    + AE  A +  IE +IE 
Sbjct: 11  VKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEY 70

Query: 350 N*RHLWIESDSQAAIKAFTSN-NIPWQMQNKWRRCKWMF--IQLILSHT*REANFAGNSI 180
           N R +W+E+DS+  +KAF+S+ ++PWQ++ +W  C  +   I+ + +H  RE N   +S+
Sbjct: 71  NLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAGADSL 130

Query: 179 S 177
           +
Sbjct: 131 A 131


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 63.5 bits (153), Expect = 2e-07
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
 Frame = -1

Query: 554 WLAPLPHMMKANTDGSSLGNSGRAGWGTIFGDAKRVFKLVYSKGLGINNNYFAECLAILG 375
           W  P+  ++K N DGSS+G       G +  D+   F    S  +G      AE  A + 
Sbjct: 216 WKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGMM 275

Query: 374 TIELAIERN*RHLWIESDSQAAIKAFTSN-NIPWQMQNKWRRCKWMF---IQLILSHT*R 207
            +E A E    H+ +E+DS   + AF     +PWQM+ +W+ C W F   I     H  R
Sbjct: 276 AMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNC-WDFCDSISCSCVHILR 334

Query: 206 EANFAGNSISGQWQK*VRILEMNVILMYEGIPPYLH 99
           E N   ++++   Q     L +    ++   PP+++
Sbjct: 335 EGNMVADALAKHGQG----LSLYYTQLWTSPPPFIY 366