BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011558
         (915 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containi...   275   8e-72
ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containi...   269   8e-70
ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|2...   264   2e-68
ref|XP_002892331.1| pentatricopeptide repeat-containing protein ...   255   9e-66
ref|NP_563765.1| pentatricopeptide repeat-containing protein [Ar...   252   7e-65

>ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06270-like [Glycine max]
          Length = 342

 Score =  275 bits (704), Expect = 8e-72
 Identities = 143/277 (51%), Positives = 194/277 (70%), Gaps = 1/277 (0%)
 Frame = -1

Query: 828 QTIQESLQSAIQSKSYTQXXXXXXXXXXXXXXXXXXXXXSYTQPLKTQIIDQILQSLIPI 649
           Q +++++++ +++K+Y +                     S+ Q ++ QI+D++LQSLIPI
Sbjct: 32  QNLEQAVRAEVEAKNYIKIPELLISSDACQISNPFSFFSSFPQNIRVQIVDEMLQSLIPI 91

Query: 648 RPRSLPHLTYSYLLSHTLQNPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWL-TYRKH 472
           RPRS   LTYSYLLS+TLQ+  PFPL  A+LQRTLRSG  PV QTH+ LSS WL  +   
Sbjct: 92  RPRSKAQLTYSYLLSYTLQSSHPFPLALAVLQRTLRSGCVPVPQTHVLLSSAWLDQHCLS 151

Query: 471 DSVPGILSGMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKSMGQVGCEPNSESYGLV 292
            SV  IL  M++IGY PD  TCNYL+ SLCAVDQ +E+V+VL+ MG  GC P+S SYG V
Sbjct: 152 HSVANILLQMQSIGYHPDCGTCNYLLSSLCAVDQLEEAVKVLRGMGGAGCIPDSSSYGAV 211

Query: 291 IGSLCGARKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVELLEKV 112
           IG++C  RKT  A++L+K+MV V+  +   QGT+VKL+AA++AN EI KAVEM+E LEK 
Sbjct: 212 IGAMCRVRKTAKALDLMKQMV-VQYGLTPGQGTLVKLLAALRANREIWKAVEMIEFLEKE 270

Query: 111 GVRVGFEGYEVLVEGCLEKKEFVLGGKMVIQMVEKGF 1
           G  VGFE YE+++EGCLEK+E+VL  K+   M E+GF
Sbjct: 271 GNSVGFESYELVIEGCLEKREYVLAAKVATGMTERGF 307


>ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270
           [Vitis vinifera] gi|302143379|emb|CBI21940.3| unnamed
           protein product [Vitis vinifera]
          Length = 343

 Score =  269 bits (687), Expect = 8e-70
 Identities = 146/278 (52%), Positives = 190/278 (68%), Gaps = 2/278 (0%)
 Frame = -1

Query: 828 QTIQESLQSAIQSKSYTQXXXXXXXXXXXXXXXXXXXXXS-YTQPLKTQIIDQILQSLIP 652
           QT++ES+++A++SK+Y +                     S ++Q L+TQ++D+ILQS IP
Sbjct: 32  QTLEESIKAAVESKTYQKIPDLLISLEETCLNPNPFSFLSTFSQNLRTQVVDEILQSFIP 91

Query: 651 IRPRSLPHLTYSYLLSHTLQNPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWLTYRKH 472
           +RPRS P + Y+ LLS TLQ+ +P PL  AILQRTLRSG  PV QTHL LSS WL+ R+ 
Sbjct: 92  LRPRSRPQIAYACLLSFTLQSANPLPLALAILQRTLRSGCIPVPQTHLLLSSAWLSRRRQ 151

Query: 471 D-SVPGILSGMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKSMGQVGCEPNSESYGL 295
             SV  ILS M++IGY PD  TCNYL+ SLCA+DQ  E+V VLKSMGQVGC P+ E YG 
Sbjct: 152 SHSVSNILSEMQSIGYYPDCGTCNYLILSLCAIDQLVEAVIVLKSMGQVGCIPDLEGYGS 211

Query: 294 VIGSLCGARKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVELLEK 115
           VIG++C  R+T DA EL+KEMV  +  +  RQGTV+ L+AA++A  EI KAVEM+E LE 
Sbjct: 212 VIGAMCAMRRTTDATELMKEMV-AKIGLTPRQGTVLNLVAALRAKKEIWKAVEMIEFLEG 270

Query: 114 VGVRVGFEGYEVLVEGCLEKKEFVLGGKMVIQMVEKGF 1
                GF  YE ++EGCL   EFVL GK+V+ M  +GF
Sbjct: 271 EDFNAGFASYESVLEGCLACHEFVLAGKVVMGMTARGF 308


>ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|222872316|gb|EEF09447.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score =  264 bits (675), Expect = 2e-68
 Identities = 145/276 (52%), Positives = 192/276 (69%), Gaps = 2/276 (0%)
 Frame = -1

Query: 822 IQESLQSAIQSKSYTQXXXXXXXXXXXXXXXXXXXXXS-YTQPLKTQIIDQILQSLIPIR 646
           ++E+L++A++ KSY++                     S +   L+TQ+ID+I+QSLIPIR
Sbjct: 32  LEETLKAAVECKSYSKFPDLFDSFKQSNNNPSPFSFLSTFPFNLRTQVIDEIIQSLIPIR 91

Query: 645 PRSLPHLTYSYLLSHTLQNPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWLTYRKH-D 469
           PR    + YS LLS+TLQN + F L+ AI+Q TLRSG  PV QTH+SLSS WL  R+   
Sbjct: 92  PRFRNFIVYSSLLSYTLQNSNLFSLSLAIIQCTLRSGCLPVPQTHVSLSSAWLDRRREGQ 151

Query: 468 SVPGILSGMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKSMGQVGCEPNSESYGLVI 289
           SV  IL  M++IGY PD   CNY+V SLC VDQ  E+V+VLK M QVGC P+ ESYG+VI
Sbjct: 152 SVGDILMEMKSIGYNPDCGLCNYIVLSLCNVDQLIEAVKVLKGMKQVGCFPDWESYGIVI 211

Query: 288 GSLCGARKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVELLEKVG 109
           G++C  RK +DA+E++KEMV V  R+  RQG VVK++AA++AN E++KA EM+E LEK G
Sbjct: 212 GAMCRVRKCDDAIEMMKEMV-VRMRLCPRQGVVVKVLAALRANREMRKAGEMIEFLEKEG 270

Query: 108 VRVGFEGYEVLVEGCLEKKEFVLGGKMVIQMVEKGF 1
             VGFE YE++VEGCLE K+F L  K+V+ M EKGF
Sbjct: 271 YGVGFESYELVVEGCLECKDFFLAAKVVMGMTEKGF 306


>ref|XP_002892331.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338173|gb|EFH68590.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 343

 Score =  255 bits (652), Expect = 9e-66
 Identities = 129/232 (55%), Positives = 171/232 (73%), Gaps = 1/232 (0%)
 Frame = -1

Query: 693 KTQIIDQILQSLIPIRPRSLPHLTYSYLLSHTLQNPDPFPLTFAILQRTLRSGGTPVKQT 514
           + ++ID+ILQS +P+RPRSLP + YS LL++ LQ+ DP PL+FAILQRTLRSG  P  QT
Sbjct: 78  RIRVIDEILQSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQT 137

Query: 513 HLSLSSTWLTYRK-HDSVPGILSGMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKSM 337
            L LS  WL  R+   SV  I++ M+ IGY PD  TCNYLV SLCAVD+ DE+++V++ M
Sbjct: 138 QLLLSDAWLERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEM 197

Query: 336 GQVGCEPNSESYGLVIGSLCGARKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANG 157
           G  GC P+ ESYG VI SLC ARKTND V++VKEMV  +  +  R+G + K+ AA++AN 
Sbjct: 198 GAAGCIPDVESYGAVINSLCLARKTNDVVKIVKEMVS-KAGISPRKGMLTKVAAALRANR 256

Query: 156 EIKKAVEMVELLEKVGVRVGFEGYEVLVEGCLEKKEFVLGGKMVIQMVEKGF 1
           EI KA+EM+E +E     V FE YEV+VEGCLE +E++L GKMV++M ++GF
Sbjct: 257 EIWKAIEMIEFVESRDYPVEFESYEVVVEGCLEVREYILAGKMVMRMTDRGF 308


>ref|NP_563765.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75264068|sp|Q9LNC0.1|PPR16_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g06270 gi|8844132|gb|AAF80224.1|AC025290_13 Contains
           similarity to an unknown protein F23N19.4 gi|6630464
           from Arabidopsis thaliana gb|AC007190 and contains
           multiple PPR PF|01535 repeats. EST gb|T44174 comes from
           this gene [Arabidopsis thaliana]
           gi|17529194|gb|AAL38823.1| unknown protein [Arabidopsis
           thaliana] gi|20465473|gb|AAM20196.1| unknown protein
           [Arabidopsis thaliana] gi|21536601|gb|AAM60933.1|
           unknown [Arabidopsis thaliana]
           gi|332189849|gb|AEE27970.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 343

 Score =  252 bits (644), Expect = 7e-65
 Identities = 127/232 (54%), Positives = 170/232 (73%), Gaps = 1/232 (0%)
 Frame = -1

Query: 693 KTQIIDQILQSLIPIRPRSLPHLTYSYLLSHTLQNPDPFPLTFAILQRTLRSGGTPVKQT 514
           + ++ID+ILQS +P+RPRSLP + YS LL++ LQ+ DP PL+FAILQRTLRSG  P  QT
Sbjct: 78  RIRVIDEILQSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQT 137

Query: 513 HLSLSSTWLTYRK-HDSVPGILSGMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKSM 337
           HL LS  WL  R+   SV  I++ M+ IGY PD  TCNYLV SLCAVD+ DE+++V++ M
Sbjct: 138 HLLLSDAWLERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEM 197

Query: 336 GQVGCEPNSESYGLVIGSLCGARKTNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANG 157
              GC P+ ESYG VI SLC ARKT D V++VKEMV  +  +  R+G + K+ AA++AN 
Sbjct: 198 SAAGCIPDVESYGAVINSLCLARKTTDVVKIVKEMVS-KAGISPRKGMLTKVAAALRANR 256

Query: 156 EIKKAVEMVELLEKVGVRVGFEGYEVLVEGCLEKKEFVLGGKMVIQMVEKGF 1
           EI KA+EM+E +E     V FE YEV+VEGCLE +E++L GK+V++M ++GF
Sbjct: 257 EIWKAIEMIEFVESRDYPVEFESYEVVVEGCLEVREYILAGKVVMRMTDRGF 308