BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011543
         (1296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              247   5e-63
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   247   5e-63
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   241   3e-61
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   241   3e-61
ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|2...   238   3e-60

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  247 bits (630), Expect = 5e-63
 Identities = 147/326 (45%), Positives = 190/326 (58%), Gaps = 16/326 (4%)
 Frame = -1

Query: 1296 NTDGWVKNI-ESQRGQPNESRESESSKSAGWNTIKSSNES-----PRTSNWNSMES---Q 1144
            N   W  N+ E    Q   S   +SS    W   K  + S     P   +W+S  +   +
Sbjct: 1545 NEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHNVMKE 1604

Query: 1143 ETLQMEPSDPWGKKTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSRQEEVNQNANPLNSD 964
            ++ Q   +  W    +   A GW  ND   Q  QWN+  +   N  Q E +    P N  
Sbjct: 1605 QSNQPASTHGW----DSPGAKGW--NDVEEQS-QWNQRGSAVKND-QSESSHGWGPSNEQ 1656

Query: 963  G--PSSTNWTKVGQ-TQDEQKGDLPWGPSMMHDQGKK--PSGPRGWGSSNSGEWK-LKNR 802
               PSS  W         E +    WG       GKK  P G RGWGS+N+ EWK  KNR
Sbjct: 1657 NQLPSSQGWGSPNAGAGHESETQSQWG----QPSGKKSRPEGSRGWGSNNT-EWKNKKNR 1711

Query: 801  PAKSPGKW-DEWNGSGNLTATRQRLDQFTSEEQQILSDVEPVMQALQRIMRQPGYKDGNP 625
            P K  G   D+++  G  TATRQR+D FTSEEQ IL DVEP+MQ+++RIM Q GY DG+P
Sbjct: 1712 PNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDP 1771

Query: 624  LSPDDQSYVLENAFNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYR 445
            LS DDQSY+L+  FN HPDKAVKMG G+DYVM+ ++S + +SRC+++VSTDG ++DFSYR
Sbjct: 1772 LSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYR 1831

Query: 444  KCVENFIKEKYPEMAESFISKYFRKP 367
            KC+ENFIKEKYP+ AE+FI KYFR+P
Sbjct: 1832 KCLENFIKEKYPDNAETFIGKYFRRP 1857


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  247 bits (630), Expect = 5e-63
 Identities = 147/326 (45%), Positives = 190/326 (58%), Gaps = 16/326 (4%)
 Frame = -1

Query: 1296 NTDGWVKNI-ESQRGQPNESRESESSKSAGWNTIKSSNES-----PRTSNWNSMES---Q 1144
            N   W  N+ E    Q   S   +SS    W   K  + S     P   +W+S  +   +
Sbjct: 1485 NEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHNVMKE 1544

Query: 1143 ETLQMEPSDPWGKKTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSRQEEVNQNANPLNSD 964
            ++ Q   +  W    +   A GW  ND   Q  QWN+  +   N  Q E +    P N  
Sbjct: 1545 QSNQPASTHGW----DSPGAKGW--NDVEEQS-QWNQRGSAVKND-QSESSHGWGPSNEQ 1596

Query: 963  G--PSSTNWTKVGQ-TQDEQKGDLPWGPSMMHDQGKK--PSGPRGWGSSNSGEWK-LKNR 802
               PSS  W         E +    WG       GKK  P G RGWGS+N+ EWK  KNR
Sbjct: 1597 NQLPSSQGWGSPNAGAGHESETQSQWG----QPSGKKSRPEGSRGWGSNNT-EWKNKKNR 1651

Query: 801  PAKSPGKW-DEWNGSGNLTATRQRLDQFTSEEQQILSDVEPVMQALQRIMRQPGYKDGNP 625
            P K  G   D+++  G  TATRQR+D FTSEEQ IL DVEP+MQ+++RIM Q GY DG+P
Sbjct: 1652 PNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDP 1711

Query: 624  LSPDDQSYVLENAFNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYR 445
            LS DDQSY+L+  FN HPDKAVKMG G+DYVM+ ++S + +SRC+++VSTDG ++DFSYR
Sbjct: 1712 LSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYR 1771

Query: 444  KCVENFIKEKYPEMAESFISKYFRKP 367
            KC+ENFIKEKYP+ AE+FI KYFR+P
Sbjct: 1772 KCLENFIKEKYPDNAETFIGKYFRRP 1797


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  241 bits (615), Expect = 3e-61
 Identities = 128/323 (39%), Positives = 188/323 (58%), Gaps = 11/323 (3%)
 Frame = -1

Query: 1296 NTDGWVKNIESQRGQPNESRESESSKSAGWNTIKSSNESPRTSNWNSMESQETLQMEPSD 1117
            N  GW   IES  G  +           G++ + +  +S  T  W+S E  +        
Sbjct: 1627 NLSGWGSQIESNEGSDH-----------GFDQVTNEQKSSDTRGWDSQEKTDK------- 1668

Query: 1116 PWGKKTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSRQEEVNQNANPLNSDGPSSTN--W 943
            PW K+     +  W G+   + G  W +    +    +E  + ++   +   P  T+  W
Sbjct: 1669 PWDKQKSLEASQSW-GSQNDSLG-SWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGW 1726

Query: 942  TKVGQTQDEQKGDLPWGP-------SMMHDQGKKPSGPRGWGSSNSGEWK-LKNRPAKSP 787
                + Q   +    WG        +  H   KK  G +GWG  N+GEWK  KNRP KSP
Sbjct: 1727 ----EQQKSPEVSHGWGSHKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPKSP 1781

Query: 786  GKW-DEWNGSGNLTATRQRLDQFTSEEQQILSDVEPVMQALQRIMRQPGYKDGNPLSPDD 610
            G   D+ N     TA+ QRLD FTSEEQ IL+D+EP+MQ+++++M Q GY DG+PLS +D
Sbjct: 1782 GMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAED 1841

Query: 609  QSYVLENAFNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCVEN 430
            QS+VL++ FN+HPDKA KMGAG+D+ M+ ++S + +SRC+++V+TDG ++DFSYRKC++N
Sbjct: 1842 QSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDN 1901

Query: 429  FIKEKYPEMAESFISKYFRKPNP 361
            FIK KYP++AE F++KYFRKP P
Sbjct: 1902 FIKGKYPDLAEMFVAKYFRKPRP 1924


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  241 bits (615), Expect = 3e-61
 Identities = 128/323 (39%), Positives = 188/323 (58%), Gaps = 11/323 (3%)
 Frame = -1

Query: 1296 NTDGWVKNIESQRGQPNESRESESSKSAGWNTIKSSNESPRTSNWNSMESQETLQMEPSD 1117
            N  GW   IES  G  +           G++ + +  +S  T  W+S E  +        
Sbjct: 1687 NLSGWGSQIESNEGSDH-----------GFDQVTNEQKSSDTRGWDSQEKTDK------- 1728

Query: 1116 PWGKKTEETKAGGWSGNDRHAQGVQWNKSPNMNTNSRQEEVNQNANPLNSDGPSSTN--W 943
            PW K+     +  W G+   + G  W +    +    +E  + ++   +   P  T+  W
Sbjct: 1729 PWDKQKSLEASQSW-GSQNDSLG-SWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGW 1786

Query: 942  TKVGQTQDEQKGDLPWGPSM-------MHDQGKKPSGPRGWGSSNSGEWK-LKNRPAKSP 787
                + Q   +    WG +         H   KK  G +GWG  N+GEWK  KNRP KSP
Sbjct: 1787 ----EQQKSPEVSHGWGSNKESSEQTSSHGWDKKNQGSKGWGG-NAGEWKNRKNRPPKSP 1841

Query: 786  GKW-DEWNGSGNLTATRQRLDQFTSEEQQILSDVEPVMQALQRIMRQPGYKDGNPLSPDD 610
            G   D+ N     TA+ QRLD FTSEEQ IL+D+EP+MQ+++++M Q GY DG+PLS +D
Sbjct: 1842 GMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAED 1901

Query: 609  QSYVLENAFNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCVEN 430
            QS+VL++ FN+HPDKA KMGAG+D+ M+ ++S + +SRC+++V+TDG ++DFSYRKC++N
Sbjct: 1902 QSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDN 1961

Query: 429  FIKEKYPEMAESFISKYFRKPNP 361
            FIK KYP++AE F++KYFRKP P
Sbjct: 1962 FIKGKYPDLAEMFVAKYFRKPRP 1984


>ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|222841358|gb|EEE78905.1|
            predicted protein [Populus trichocarpa]
          Length = 1020

 Score =  238 bits (607), Expect = 3e-60
 Identities = 141/335 (42%), Positives = 185/335 (55%), Gaps = 38/335 (11%)
 Frame = -1

Query: 1248 NESRESESSKSAGWNTIKSSNESPRTSNWNSMESQETLQMEPSDPWGKKTEETKAGGWSG 1069
            N+S   +  +S GW    +SN++   S W   +S E      S  WG   E       SG
Sbjct: 687  NQSLAGQGKESGGWGNKVTSNQADTASGWGKPKSSEN-----SQGWGLSKE-------SG 734

Query: 1068 NDRHAQGVQ----WNKSPNMNTNSRQEEVNQ-------NANPLNSDGPSSTNWTKV---- 934
             + H  GV      N S   N N  Q  V Q       N    N +G +S  W K     
Sbjct: 735  KEVHEWGVPNSAGGNGSETNNNNENQSLVEQGKESGWDNKASSNQEGTAS-GWGKPKSPA 793

Query: 933  -----GQTQDEQKG-----------------DLPWGPSMMHDQGKKPSGPRGWGSSNSGE 820
                 G  ++  K                  D  WG      +  +  G RGWGS+N G+
Sbjct: 794  LSEGWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWGQQSREFKKDRFEGSRGWGSNN-GD 852

Query: 819  WKLK-NRPAKSPGKWDEWNGSGNLTATRQRLDQFTSEEQQILSDVEPVMQALQRIMRQPG 643
            WK K NRP+K     ++ N SG  T TRQRLD FTS+EQ ILSD+EP+M +++RIM Q G
Sbjct: 853  WKNKRNRPSKPH---EDLNASGIFTTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTG 909

Query: 642  YKDGNPLSPDDQSYVLENAFNYHPDKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRR 463
            Y DG+PLS DDQSYVL+N F+YHPDKAVKMGAG+D+V + ++S + +SRC++IVSTDG +
Sbjct: 910  YNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGCK 969

Query: 462  DDFSYRKCVENFIKEKYPEMAESFISKYFRKPNPR 358
             DFSYRKC+ENFIK KYP++A+ FI+KYF +   R
Sbjct: 970  QDFSYRKCLENFIKGKYPDLADEFIAKYFARRGNR 1004