BLASTX nr result
ID: Coptis21_contig00011454
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00011454
(955 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas] 49 2e-09
ref|XP_001770548.1| predicted protein [Physcomitrella patens sub... 46 3e-09
ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-l... 48 6e-09
gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis] 48 1e-08
ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis th... 57 2e-07
>dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 48.5 bits (114), Expect(3) = 2e-09
Identities = 28/86 (32%), Positives = 49/86 (56%)
Frame = -2
Query: 495 IEYSDEVAALKAIRALNGMLLNNTQVHITPFIYQKTREEEARRLQRLPTLYVRHEPVSLS 316
+++ +E +A AI LNGMLLN+ QV++ PF+ +K E A +YV++ + +
Sbjct: 162 VQFDNEESAKNAIDKLNGMLLNDKQVYVGPFL-RKQERESAIDKATFNNVYVKNLSETTT 220
Query: 315 PSYVSEVIREYGTVANIHFVMDDDHG 238
+ ++ EYGT+ + VM D +G
Sbjct: 221 EEDLKKIFGEYGTITSA-VVMRDGNG 245
Score = 30.8 bits (68), Expect(3) = 2e-09
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = -1
Query: 706 GYLSCNSAHASWKCHGVVDFPLYQWEPIRIAM-----LSNQKEKAKICIPGVDSSIRRKV 542
GY++ N+ H + + V++F +PIRI + I I +D +I K
Sbjct: 73 GYVNYNNVHDAAQAIEVLNFTPVNGKPIRIMYSYRDPTIRKSGTGNIYIKNLDKAIDNKA 132
Query: 541 LWGFLEKYGTIITCE 497
L +G+I++C+
Sbjct: 133 LHDTFSAFGSILSCK 147
Score = 28.5 bits (62), Expect(3) = 2e-09
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 200 DDDAAMLEKLNGCCGGHESWYVQFKSEGEKKDELDYKSEGR 78
DD A +E LNG + WYV + +KK E + + +GR
Sbjct: 259 DDAAQSVEALNGKTFDEKEWYV---GKAQKKSEREVELKGR 296
>ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 645
Score = 46.2 bits (108), Expect(3) = 3e-09
Identities = 25/86 (29%), Positives = 49/86 (56%)
Frame = -2
Query: 495 IEYSDEVAALKAIRALNGMLLNNTQVHITPFIYQKTREEEARRLQRLPTLYVRHEPVSLS 316
+++ E +A AI +NGMLLN+ QV + PF+ ++ R++ + + +YV++ S +
Sbjct: 157 VQFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSG-VVSKFNNVYVKNLADSTT 215
Query: 315 PSYVSEVIREYGTVANIHFVMDDDHG 238
+ +V YG +++ VM D+ G
Sbjct: 216 DDELKKVFEAYGPISSA-VVMRDNEG 240
Score = 32.0 bits (71), Expect(3) = 3e-09
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = -1
Query: 703 YLSCNSAHASWKCHGVVDFPLYQWEPIRIAMLSNQKEK------AKICIPGVDSSIRRKV 542
Y++ N+A + + +++F +PIRI M S++ A I I +D SI K
Sbjct: 69 YVNYNNAQDATRALELLNFNAVNGKPIRI-MFSHRDPSIRKSGTANIFIKNLDKSIDNKA 127
Query: 541 LWGFLEKYGTIITCE 497
L +GTI++C+
Sbjct: 128 LHDTFAAFGTILSCK 142
Score = 29.3 bits (64), Expect(3) = 3e-09
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -3
Query: 203 HDDDAAM-LEKLNGCCGGHESWYV---QFKSEGEKKDELDYKSEGRKRLHHSEIPQMPLK 36
H DDAA +E LNG + WYV Q KSE E + ++ E ++R+ + + LK
Sbjct: 252 HADDAAKAVEALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLK 311
>ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein
[Glycine max]
Length = 630
Score = 48.1 bits (113), Expect(3) = 6e-09
Identities = 29/99 (29%), Positives = 53/99 (53%)
Frame = -2
Query: 504 HASIEYSDEVAALKAIRALNGMLLNNTQVHITPFIYQKTREEEARRLQRLPTLYVRHEPV 325
H +++ E +A AI LNGML+N+ QV + PF+ ++ R E A + ++V++
Sbjct: 154 HGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDR-ESALSGTKFNNVFVKNLLD 212
Query: 324 SLSPSYVSEVIREYGTVANIHFVMDDDHGLRTGAVYVTY 208
S++ + + + EYG + + VM D G G +V +
Sbjct: 213 SMTEADLERIFGEYGAITSA-VVMRDVDGKSKGFGFVNF 250
Score = 32.3 bits (72), Expect(3) = 6e-09
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = -1
Query: 724 QAILFIGYLSCNSAHASWKCHGVVDFPLYQWEPIRIAM-----LSNQKEKAKICIPGVDS 560
Q L GY++ ++AH + K V++F + IRI + + A + I +D
Sbjct: 62 QQSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDK 121
Query: 559 SIRRKVLWGFLEKYGTIITCE 497
+I K L+ +G I++C+
Sbjct: 122 AIDHKALYDTFSAFGNILSCK 142
Score = 25.8 bits (55), Expect(3) = 6e-09
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 200 DDDAAMLEKLNGCCGGHESWYVQFKSEGEKKDELDYKSEGRKRLHHSEIPQMPLKK 33
DD A +E LNG + WYV + +KK E + + +G+ H +I + + K
Sbjct: 254 DDAAKAVEALNGKNFDGKEWYV---GKAQKKSERELELKGQ----HEQITKETVDK 302
>gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 48.1 bits (113), Expect(3) = 1e-08
Identities = 25/84 (29%), Positives = 48/84 (57%)
Frame = -2
Query: 495 IEYSDEVAALKAIRALNGMLLNNTQVHITPFIYQKTREEEARRLQRLPTLYVRHEPVSLS 316
+++ +E +A AI LNGMLLN+ QV + PF+ ++ RE A + R +YV++ + +
Sbjct: 173 VQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK-TRFNNVYVKNLSETTT 231
Query: 315 PSYVSEVIREYGTVANIHFVMDDD 244
+ ++ E+G + + + D D
Sbjct: 232 EDDLKKIFGEFGIITSTAVMRDAD 255
Score = 32.3 bits (72), Expect(3) = 1e-08
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -1
Query: 706 GYLSCNSAHASWKCHGVVDFPLYQWEPIRIAM-----LSNQKEKAKICIPGVDSSIRRKV 542
GY++ N+AH + + ++F +PIRI + I I +D SI K
Sbjct: 84 GYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKA 143
Query: 541 LWGFLEKYGTIITCE 497
L +G I++C+
Sbjct: 144 LHDTFSTFGNILSCK 158
Score = 25.0 bits (53), Expect(3) = 1e-08
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 200 DDDAAMLEKLNGCCGGHESWYVQFKSEGEKKDELDYKSEGR 78
DD A +E LNG + WYV + +KK E + + +G+
Sbjct: 270 DDAARSVEALNGKKFDDKEWYV---GKAQKKYEREMELKGK 307
>ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName:
Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2 gi|304109|gb|AAA61780.1|
poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein
[Arabidopsis thaliana] gi|7270360|emb|CAB80128.1|
poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative
polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana] gi|332660925|gb|AEE86325.1|
Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 56.6 bits (135), Expect(2) = 2e-07
Identities = 31/97 (31%), Positives = 55/97 (56%)
Frame = -2
Query: 495 IEYSDEVAALKAIRALNGMLLNNTQVHITPFIYQKTREEEARRLQRLPTLYVRHEPVSLS 316
++Y++E +A KAI LNGMLLN+ QV++ PF+ ++ R+ A + + +YV++ S +
Sbjct: 169 VQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANK-TKFTNVYVKNLAESTT 227
Query: 315 PSYVSEVIREYGTVANIHFVMDDDHGLRTGAVYVTYK 205
+ EYG + + VM D G G +V ++
Sbjct: 228 DDDLKNAFGEYGKITSA-VVMKDGEGKSKGFGFVNFE 263
Score = 25.4 bits (54), Expect(2) = 2e-07
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 200 DDDAAMLEKLNGCCGGHESWYV---QFKSEGEKKDELDYK 90
DD A +E LNG + WYV Q KSE E + + Y+
Sbjct: 266 DDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYE 305