BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010444
         (860 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containi...   286   4e-75
emb|CBI26347.3| unnamed protein product [Vitis vinifera]              286   4e-75
ref|XP_002517032.1| pentatricopeptide repeat-containing protein,...   263   3e-68
ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containi...   248   1e-63
ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   247   3e-63

>ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
           [Vitis vinifera]
          Length = 881

 Score =  286 bits (732), Expect = 4e-75
 Identities = 154/273 (56%), Positives = 184/273 (67%), Gaps = 23/273 (8%)
 Frame = +3

Query: 111 MDVSCLHVVVSTKTPPLVLGG-----VGHVNKVREQNFVEIPNGANKRISKVYRKIQ-TR 272
           +D +C  V+ +  +P +         V  + K R Q   E PNG  KR S+V R+    R
Sbjct: 8   LDTNCFQVLSARGSPNIGDSASSSDKVEFIKKRRVQKVPESPNGGVKRFSRVCRQTHHDR 67

Query: 273 RSDDVVRPGLNGSTSVEKPIQDQ-------DKKVRKSCGA--FDSSERKKAL-------- 401
           RS    +PGLN    V+ P + Q        + + K  G   F S +    +        
Sbjct: 68  RSGASQKPGLNQHGFVKDPERKQRRHSGGDGRTINKRGGVVGFRSGDANDLVEKVSTNCS 127

Query: 402 LKWGSYGGCLPLILRALDTIKDLDEALKPWEKTLNNKERSIILKEQVIWERALEIFNWFK 581
            KW SYGGC+P ILRAL+T+KDLDEAL PWE++L+NKERSIILKEQ  WERALEIF W K
Sbjct: 128 TKWLSYGGCIPSILRALETVKDLDEALSPWEESLSNKERSIILKEQSCWERALEIFEWLK 187

Query: 582 RKGCYELNVIHYNIMIRILGKARKWDHVENLWNEMQANGTAPTNSTYGTLIDVYSKGGLR 761
           +KGCYELNVIHYNIM+RILGKARKW HVE+LW+EM + G  P NSTYGTLIDVYSKGGL 
Sbjct: 188 KKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLT 247

Query: 762 EEALLWLERMNKQGMEPDEVTMGIVVQTYKKSG 860
           EEAL WL+RMNKQGMEPDEVTMG+VVQTYKK+G
Sbjct: 248 EEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAG 280


>emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  286 bits (732), Expect = 4e-75
 Identities = 154/273 (56%), Positives = 184/273 (67%), Gaps = 23/273 (8%)
 Frame = +3

Query: 111 MDVSCLHVVVSTKTPPLVLGG-----VGHVNKVREQNFVEIPNGANKRISKVYRKIQ-TR 272
           +D +C  V+ +  +P +         V  + K R Q   E PNG  KR S+V R+    R
Sbjct: 8   LDTNCFQVLSARGSPNIGDSASSSDKVEFIKKRRVQKVPESPNGGVKRFSRVCRQTHHDR 67

Query: 273 RSDDVVRPGLNGSTSVEKPIQDQ-------DKKVRKSCGA--FDSSERKKAL-------- 401
           RS    +PGLN    V+ P + Q        + + K  G   F S +    +        
Sbjct: 68  RSGASQKPGLNQHGFVKDPERKQRRHSGGDGRTINKRGGVVGFRSGDANDLVEKVSTNCS 127

Query: 402 LKWGSYGGCLPLILRALDTIKDLDEALKPWEKTLNNKERSIILKEQVIWERALEIFNWFK 581
            KW SYGGC+P ILRAL+T+KDLDEAL PWE++L+NKERSIILKEQ  WERALEIF W K
Sbjct: 128 TKWLSYGGCIPSILRALETVKDLDEALSPWEESLSNKERSIILKEQSCWERALEIFEWLK 187

Query: 582 RKGCYELNVIHYNIMIRILGKARKWDHVENLWNEMQANGTAPTNSTYGTLIDVYSKGGLR 761
           +KGCYELNVIHYNIM+RILGKARKW HVE+LW+EM + G  P NSTYGTLIDVYSKGGL 
Sbjct: 188 KKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLT 247

Query: 762 EEALLWLERMNKQGMEPDEVTMGIVVQTYKKSG 860
           EEAL WL+RMNKQGMEPDEVTMG+VVQTYKK+G
Sbjct: 248 EEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAG 280


>ref|XP_002517032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543667|gb|EEF45195.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 875

 Score =  263 bits (673), Expect = 3e-68
 Identities = 140/262 (53%), Positives = 173/262 (66%), Gaps = 19/262 (7%)
 Frame = +3

Query: 132 VVVSTKTPPLV--LGGVGHVNKVREQNFVEIPNGANKRISKVYRKIQTRRSDDVVRPGLN 305
           V VST T   V  L  +  V K+RE+  +E  NG  K+   ++++ + + +D   + G  
Sbjct: 27  VSVSTNTGISVSPLENIEPVKKLREKRLLETSNGTVKKFGVIHKQSRDKANDSAHKNGFG 86

Query: 306 GSTSVEKPIQDQDKKVRKSCGAFDSSE-----------------RKKALLKWGSYGGCLP 434
                + P + Q K  R +    ++                   R K   KW +YGG +P
Sbjct: 87  KQALEQNPDRQQRKMGRNNYKTMNNKSLGVKFHRINGNDSVDKVRTKCSTKWVNYGGSIP 146

Query: 435 LILRALDTIKDLDEALKPWEKTLNNKERSIILKEQVIWERALEIFNWFKRKGCYELNVIH 614
            IL AL+TIK+LDEALKPWE TL+NKERSIILKEQ  WERA+EIF WFK +GCYELNVIH
Sbjct: 147 SILEALETIKNLDEALKPWEDTLSNKERSIILKEQCSWERAMEIFEWFKSRGCYELNVIH 206

Query: 615 YNIMIRILGKARKWDHVENLWNEMQANGTAPTNSTYGTLIDVYSKGGLREEALLWLERMN 794
           YNIMIRILGKA++W ++E L NEM     +P NSTYGTLIDVYSKGGLRE+AL WLE+MN
Sbjct: 207 YNIMIRILGKAKQWRYLECLCNEMSFKRISPINSTYGTLIDVYSKGGLREKALDWLEKMN 266

Query: 795 KQGMEPDEVTMGIVVQTYKKSG 860
           KQGMEPDEVTMGIVVQ YKK+G
Sbjct: 267 KQGMEPDEVTMGIVVQMYKKAG 288


>ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Cucumis sativus]
          Length = 858

 Score =  248 bits (634), Expect = 1e-63
 Identities = 135/267 (50%), Positives = 168/267 (62%), Gaps = 17/267 (6%)
 Frame = +3

Query: 111 MDVSCLHVVVSTKTPPLVLGGVGHVNKV----REQNFVEIPNGANKRISKVYRKIQTRRS 278
           +D  C+H + ST   P+V   V   + +    ++ N   IP   N+ + KV    ++   
Sbjct: 4   LDTPCVHGLGSTLRSPIVGASVSPPDNLVPISKKPNDWWIPECPNRVLKKVGGVQKSTND 63

Query: 279 DDVVRPGLNGSTSVEKPIQDQDKK---------VRKSCGAFDSSE----RKKALLKWGSY 419
           +   R  +    + +   ++  K+         V+K  G   +        K   KW SY
Sbjct: 64  NGGRRQEIRFKKANKMEERETQKRNRHLGHRVVVKKDAGGDGNGSVEKVHAKCSTKWLSY 123

Query: 420 GGCLPLILRALDTIKDLDEALKPWEKTLNNKERSIILKEQVIWERALEIFNWFKRKGCYE 599
           GGC+P IL+ALD I DLDEALKPW+  LNNKERSIILKEQ  WERALEIF WF   GCYE
Sbjct: 124 GGCIPAILQALDEISDLDEALKPWKDKLNNKERSIILKEQTSWERALEIFEWFNMAGCYE 183

Query: 600 LNVIHYNIMIRILGKARKWDHVENLWNEMQANGTAPTNSTYGTLIDVYSKGGLREEALLW 779
           +NVIHYNI++  LGKA+KW  VE+LW EM   G  P NSTYGTLIDVYSKGG +EEAL+W
Sbjct: 184 VNVIHYNIVLGTLGKAQKWRLVESLWVEMNKKGIKPINSTYGTLIDVYSKGGFKEEALVW 243

Query: 780 LERMNKQGMEPDEVTMGIVVQTYKKSG 860
           LERMN+QGMEPDEVTMGIVVQ YKK+G
Sbjct: 244 LERMNEQGMEPDEVTMGIVVQLYKKAG 270


>ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g23020-like [Cucumis sativus]
          Length = 859

 Score =  247 bits (630), Expect = 3e-63
 Identities = 131/236 (55%), Positives = 152/236 (64%)
 Frame = +3

Query: 153 PPLVLGGVGHVNKVREQNFVEIPNGANKRISKVYRKIQTRRSDDVVRPGLNGSTSVEKPI 332
           P  VL  VG V K    N         K+ +K+  +   +R+  +V   + G        
Sbjct: 47  PNRVLKKVGGVQKSTNDNGGRRQEIRFKKANKMEERETQKRNRHLVGHRVVGKKDAGGDG 106

Query: 333 QDQDKKVRKSCGAFDSSERKKALLKWGSYGGCLPLILRALDTIKDLDEALKPWEKTLNNK 512
               +KV   C             KW SYGGC+P IL+ALD I DLDEALKPW+  LNNK
Sbjct: 107 NGSVEKVHAKCST-----------KWLSYGGCIPAILQALDEISDLDEALKPWKDKLNNK 155

Query: 513 ERSIILKEQVIWERALEIFNWFKRKGCYELNVIHYNIMIRILGKARKWDHVENLWNEMQA 692
           ERSIILKEQ  WERALEIF WF   GCYE+NVIHYNI++  LGKA+KW  VE+LW EM  
Sbjct: 156 ERSIILKEQTSWERALEIFEWFNMAGCYEVNVIHYNIVLGTLGKAQKWRLVESLWVEMNK 215

Query: 693 NGTAPTNSTYGTLIDVYSKGGLREEALLWLERMNKQGMEPDEVTMGIVVQTYKKSG 860
            G  P NSTYGTLIDVYSKGG +EEAL+WLERMN+QGMEPDEVTMGIVVQ YKK+G
Sbjct: 216 KGIKPINSTYGTLIDVYSKGGFKEEALVWLERMNEQGMEPDEVTMGIVVQLYKKAG 271