BLASTX nr result
ID: Coptis21_contig00010368
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00010368
(1111 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|2... 146 3e-50
ref|XP_002518663.1| U520, putative [Ricinus communis] gi|2235420... 146 2e-49
ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotei... 145 3e-49
ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotei... 145 3e-49
ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotei... 146 5e-49
>ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|222869248|gb|EEF06379.1|
predicted protein [Populus trichocarpa]
Length = 2157
Score = 146 bits (369), Expect(2) = 3e-50
Identities = 72/111 (64%), Positives = 86/111 (77%)
Frame = -2
Query: 1026 HVQVLVSTVGLAWNTSMRAHTVIIKGTQSYNQIRETWTELSPLDVLQMLGRAGMPQHDTY 847
HVQVLVST LAW ++ AHTVIIKGTQ YN + WTELSPLDV+QMLGRAG PQ+D+Y
Sbjct: 809 HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSY 868
Query: 846 GVGIILTNHNQLMYYFLLVNQFLSIESQFLPELPYYLNSEIALGTVKNVGE 694
G GII+T H++L YY L+NQ L IESQF+ +L LN+EI LGTV+N E
Sbjct: 869 GEGIIITGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNARE 919
Score = 79.7 bits (195), Expect(2) = 3e-50
Identities = 51/126 (40%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Frame = -1
Query: 691 CHWVGYTYLCTRLNQDLKSRNPTAIG--------DVLSDKFRTELTHAAATILAENNLAK 536
CHW+GYTYL R+ RNPT G D+ ++ R +L H+AA IL +NNL K
Sbjct: 921 CHWLGYTYLYIRM-----LRNPTLYGLAPDVLTRDITLEERRADLIHSAAAILDKNNLVK 975
Query: 535 YDPKSGNLRSTEQGRSLAACIPVERYI-TYHEHLKLEMGGSKQHRLISLGEVLNYSST-E 362
YD KSG + T+ GR + I TY+EHLK MG + RL SL E Y + +
Sbjct: 976 YDRKSGYFQGTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1035
Query: 361 DSSQDL 344
D +L
Sbjct: 1036 DEKMEL 1041
Score = 58.5 bits (140), Expect = 3e-06
Identities = 31/107 (28%), Positives = 51/107 (47%)
Frame = -2
Query: 1023 VQVLVSTVGLAWNTSMRAHTVIIKGTQSYNQIRETWTELSPLDVLQMLGRAGMPQHDTYG 844
+QV V + + W + AH V++ GTQ Y+ T+ D+LQM+G A P D G
Sbjct: 1652 IQVCVMSSSMCWGVPLSAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSG 1711
Query: 843 VGIILTNHNQLMYYFLLVNQFLSIESQFLPELPYYLNSEIALGTVKN 703
+I + + YY + + +ES L N+E+ G ++N
Sbjct: 1712 KCVIFCHAPRKEYYKKFLYEAFPVESHLHHFLHDNFNAEVVAGVIEN 1758
>ref|XP_002518663.1| U520, putative [Ricinus communis] gi|223542044|gb|EEF43588.1| U520,
putative [Ricinus communis]
Length = 1809
Score = 146 bits (368), Expect(2) = 2e-49
Identities = 73/116 (62%), Positives = 86/116 (74%)
Frame = -2
Query: 1026 HVQVLVSTVGLAWNTSMRAHTVIIKGTQSYNQIRETWTELSPLDVLQMLGRAGMPQHDTY 847
HVQVLVST LAW ++ AHTVIIKGTQ YN + WTELSPLDV+QMLGRAG PQ+D+Y
Sbjct: 469 HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSY 528
Query: 846 GVGIILTNHNQLMYYFLLVNQFLSIESQFLPELPYYLNSEIALGTVKNVGERATGL 679
G GII+T H +L YY L+NQ L IESQF+ +L LN+EI LGTV+N E L
Sbjct: 529 GEGIIITGHTELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWL 584
Score = 77.0 bits (188), Expect(2) = 2e-49
Identities = 50/126 (39%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Frame = -1
Query: 691 CHWVGYTYLCTRLNQDLKSRNPTAIG--------DVLSDKFRTELTHAAATILAENNLAK 536
C+W+GYTYL R+ RNPT G D+ ++ R +L H++ATIL +NNL K
Sbjct: 581 CNWLGYTYLYIRM-----LRNPTLYGLAPDVLTRDITLEERRADLIHSSATILDKNNLVK 635
Query: 535 YDPKSGNLRSTEQGRSLAACIPVERYI-TYHEHLKLEMGGSKQHRLISLGEVLNYSST-E 362
YD KSG + T+ GR + I TY+EHLK MG + RL SL E Y + +
Sbjct: 636 YDRKSGYFQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 695
Query: 361 DSSQDL 344
D +L
Sbjct: 696 DEKMEL 701
Score = 60.1 bits (144), Expect = 1e-06
Identities = 32/107 (29%), Positives = 52/107 (48%)
Frame = -2
Query: 1023 VQVLVSTVGLAWNTSMRAHTVIIKGTQSYNQIRETWTELSPLDVLQMLGRAGMPQHDTYG 844
+QV V + + W + AH V++ GTQ Y+ T+ D+LQM+G A P D G
Sbjct: 1308 IQVCVMSSSMCWGVPLAAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSG 1367
Query: 843 VGIILTNHNQLMYYFLLVNQFLSIESQFLPELPYYLNSEIALGTVKN 703
+IL + + YY + + +ES L N+E+ G ++N
Sbjct: 1368 KCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNFNAEVVAGVIEN 1414
>ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Glycine max]
Length = 2183
Score = 145 bits (367), Expect(2) = 3e-49
Identities = 72/111 (64%), Positives = 86/111 (77%)
Frame = -2
Query: 1026 HVQVLVSTVGLAWNTSMRAHTVIIKGTQSYNQIRETWTELSPLDVLQMLGRAGMPQHDTY 847
HVQVLVST LAW ++ AHTVIIKGTQ YN + WTELSPLDV+QMLGRAG PQ+D+Y
Sbjct: 841 HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSY 900
Query: 846 GVGIILTNHNQLMYYFLLVNQFLSIESQFLPELPYYLNSEIALGTVKNVGE 694
G GII+T H++L YY L+NQ L IESQF+ +L LN+EI LGTV+N E
Sbjct: 901 GEGIIVTGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNARE 951
Score = 77.0 bits (188), Expect(2) = 3e-49
Identities = 50/126 (39%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Frame = -1
Query: 691 CHWVGYTYLCTRLNQDLKSRNPTAIG--------DVLSDKFRTELTHAAATILAENNLAK 536
C+W+GYTYL R+ RNP+ G D+ ++ R +L H AATIL NNL K
Sbjct: 953 CNWIGYTYLYVRM-----LRNPSLYGIAPDVLTRDITLEERRADLIHTAATILDRNNLVK 1007
Query: 535 YDPKSGNLRSTEQGRSLAACIPVERYI-TYHEHLKLEMGGSKQHRLISLGEVLNYSST-E 362
YD KSG + T+ GR + I TY+EHLK MG + RL SL E Y + +
Sbjct: 1008 YDRKSGYFQVTDLGRIASYYYITHGSISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1067
Query: 361 DSSQDL 344
D +L
Sbjct: 1068 DEKMEL 1073
Score = 61.6 bits (148), Expect = 3e-07
Identities = 34/107 (31%), Positives = 53/107 (49%)
Frame = -2
Query: 1023 VQVLVSTVGLAWNTSMRAHTVIIKGTQSYNQIRETWTELSPLDVLQMLGRAGMPQHDTYG 844
+QV V + W ++ AH V++ GTQ Y+ T+ D+LQM+G A P D G
Sbjct: 1679 IQVCVLNSSMCWGVTLSAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVDNSG 1738
Query: 843 VGIILTNHNQLMYYFLLVNQFLSIESQFLPELPYYLNSEIALGTVKN 703
+IL + + YY + + +ES L LN+EI G ++N
Sbjct: 1739 KCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIEN 1785
>ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Glycine max]
Length = 2183
Score = 145 bits (367), Expect(2) = 3e-49
Identities = 72/111 (64%), Positives = 86/111 (77%)
Frame = -2
Query: 1026 HVQVLVSTVGLAWNTSMRAHTVIIKGTQSYNQIRETWTELSPLDVLQMLGRAGMPQHDTY 847
HVQVLVST LAW ++ AHTVIIKGTQ YN + WTELSPLDV+QMLGRAG PQ+D+Y
Sbjct: 841 HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSY 900
Query: 846 GVGIILTNHNQLMYYFLLVNQFLSIESQFLPELPYYLNSEIALGTVKNVGE 694
G GII+T H++L YY L+NQ L IESQF+ +L LN+EI LGTV+N E
Sbjct: 901 GEGIIVTGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNARE 951
Score = 77.0 bits (188), Expect(2) = 3e-49
Identities = 50/126 (39%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Frame = -1
Query: 691 CHWVGYTYLCTRLNQDLKSRNPTAIG--------DVLSDKFRTELTHAAATILAENNLAK 536
C+W+GYTYL R+ RNP+ G D+ ++ R +L H AATIL NNL K
Sbjct: 953 CNWIGYTYLYVRM-----LRNPSLYGIAPDVLTRDITLEERRADLIHTAATILDRNNLVK 1007
Query: 535 YDPKSGNLRSTEQGRSLAACIPVERYI-TYHEHLKLEMGGSKQHRLISLGEVLNYSST-E 362
YD KSG + T+ GR + I TY+EHLK MG + RL SL E Y + +
Sbjct: 1008 YDRKSGYFQVTDLGRIASYYYITHGSISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1067
Query: 361 DSSQDL 344
D +L
Sbjct: 1068 DEKMEL 1073
Score = 61.2 bits (147), Expect = 4e-07
Identities = 34/107 (31%), Positives = 53/107 (49%)
Frame = -2
Query: 1023 VQVLVSTVGLAWNTSMRAHTVIIKGTQSYNQIRETWTELSPLDVLQMLGRAGMPQHDTYG 844
+QV V + W ++ AH V++ GTQ Y+ T+ D+LQM+G A P D G
Sbjct: 1679 IQVCVLNSSMCWGVTLLAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVDNSG 1738
Query: 843 VGIILTNHNQLMYYFLLVNQFLSIESQFLPELPYYLNSEIALGTVKN 703
+IL + + YY + + +ES L LN+EI G ++N
Sbjct: 1739 KCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIEN 1785
>ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis
vinifera]
Length = 2177
Score = 146 bits (368), Expect(2) = 5e-49
Identities = 72/111 (64%), Positives = 86/111 (77%)
Frame = -2
Query: 1026 HVQVLVSTVGLAWNTSMRAHTVIIKGTQSYNQIRETWTELSPLDVLQMLGRAGMPQHDTY 847
HVQVLVST LAW ++ AHTVIIKGTQ YN + WTELSPLDV+QMLGRAG PQ+D+Y
Sbjct: 836 HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSY 895
Query: 846 GVGIILTNHNQLMYYFLLVNQFLSIESQFLPELPYYLNSEIALGTVKNVGE 694
G GII+T H++L YY L+NQ L IESQF+ +L LN+EI LGTV+N E
Sbjct: 896 GEGIIITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNARE 946
Score = 75.9 bits (185), Expect(2) = 5e-49
Identities = 50/126 (39%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
Frame = -1
Query: 691 CHWVGYTYLCTRLNQDLKSRNPTAIG--------DVLSDKFRTELTHAAATILAENNLAK 536
C W+GYTYL R+ RNPT G D+ ++ R +L H+AA IL NNL K
Sbjct: 948 CSWIGYTYLYVRM-----LRNPTLYGLSHDALTRDITLEERRADLIHSAAIILDRNNLVK 1002
Query: 535 YDPKSGNLRSTEQGRSLAACIPVERYI-TYHEHLKLEMGGSKQHRLISLGEVLNYSST-E 362
YD KSG + T+ GR + I TY+EHLK MG + RL SL E Y + +
Sbjct: 1003 YDRKSGYFQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1062
Query: 361 DSSQDL 344
D +L
Sbjct: 1063 DEKMEL 1068
Score = 64.3 bits (155), Expect = 5e-08
Identities = 35/107 (32%), Positives = 54/107 (50%)
Frame = -2
Query: 1023 VQVLVSTVGLAWNTSMRAHTVIIKGTQSYNQIRETWTELSPLDVLQMLGRAGMPQHDTYG 844
+QV V + L W + AH V++ GTQ Y+ T+ D+LQM+G A P D G
Sbjct: 1675 IQVCVMSSSLCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSG 1734
Query: 843 VGIILTNHNQLMYYFLLVNQFLSIESQFLPELPYYLNSEIALGTVKN 703
+IL + + YY + + +ES L LN+EI +G ++N
Sbjct: 1735 KCVILCHAPRKEYYKKFLYEAFPVESHLQHYLHDNLNAEIVVGVIEN 1781