BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010279
         (965 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149098.1| PREDICTED: RING-H2 finger protein ATL56-like...   102   1e-19
ref|XP_003610228.1| RING finger-like protein [Medicago truncatul...    98   3e-18
gb|AFK34620.1| unknown [Medicago truncatula]                           98   3e-18
dbj|BAH56864.1| AT2G18670 [Arabidopsis thaliana]                       96   1e-17
ref|NP_179457.1| RING-H2 finger protein ATL56 [Arabidopsis thali...    96   1e-17

>ref|XP_004149098.1| PREDICTED: RING-H2 finger protein ATL56-like [Cucumis sativus]
           gi|449507961|ref|XP_004163179.1| PREDICTED: RING-H2
           finger protein ATL56-like [Cucumis sativus]
          Length = 178

 Score =  102 bits (254), Expect = 1e-19
 Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
 Frame = +2

Query: 83  KPKPKFLSFFLQSIIMLCIITLFFLFLGIAT-VFIIHICIAGXXXXXXXXXXXXXXXFPF 259
           KP+ + LS  L+  IM+ + TLFF+FLG+AT + +IH+C+A                  F
Sbjct: 22  KPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLCVASALHRRRR----------F 71

Query: 260 DYIDTEFNNFSSSGISEHDINKLPSYGYISVVKLLNCGATQEDCCAICLDGFRENERFRI 439
               +++++ SSSG S  D+ KL  + + + V       +Q DC +ICLDGFR+ +  R 
Sbjct: 72  HSRHSQYSD-SSSGFSHRDLKKLLQFRFSNWVN----PHSQIDC-SICLDGFRKGQWCRR 125

Query: 440 LPGCKHVFHVGCIDVWLMKVSACPTCRGVVELN 538
           L GC HV+H  CID WL++VSACP CR  V L+
Sbjct: 126 LGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLD 158


>ref|XP_003610228.1| RING finger-like protein [Medicago truncatula]
           gi|355511283|gb|AES92425.1| RING finger-like protein
           [Medicago truncatula]
          Length = 182

 Score = 98.2 bits (243), Expect = 3e-18
 Identities = 59/170 (34%), Positives = 80/170 (47%), Gaps = 1/170 (0%)
 Frame = +2

Query: 32  HHAHTPDDLPVPQRAQRKPKPKFLSFFLQSIIMLCIITLFFLFLGIATVFIIHICIAGXX 211
           HH H   + P       KP P  LS FL+ IIML + +LFFLFLG A   ++++ +    
Sbjct: 4   HHHHGDPEQP-------KPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAGA 56

Query: 212 XXXXXXXXXXXXXFPFDYIDTEFNNFSSSGISEHDINKLPSYGYISVVKLLNCGATQEDC 391
                          F    T      +      +IN LP++      ++     ++ D 
Sbjct: 57  LHRLR----------FRPTPTRRLQSLTDAFLPREINNLPNF------RITKGSVSEPDS 100

Query: 392 -CAICLDGFRENERFRILPGCKHVFHVGCIDVWLMKVSACPTCRGVVELN 538
            CA+CLDGFR  +  R L  C HVFH  CID WL+KV+ CPTCR  V  N
Sbjct: 101 RCAVCLDGFRNGQWCRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSN 150


>gb|AFK34620.1| unknown [Medicago truncatula]
          Length = 182

 Score = 97.8 bits (242), Expect = 3e-18
 Identities = 59/170 (34%), Positives = 80/170 (47%), Gaps = 1/170 (0%)
 Frame = +2

Query: 32  HHAHTPDDLPVPQRAQRKPKPKFLSFFLQSIIMLCIITLFFLFLGIATVFIIHICIAGXX 211
           HH H   + P       KP P  LS FL+ IIML + +LFFLFLG A   ++++ +    
Sbjct: 4   HHHHGDPEQP-------KPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAGA 56

Query: 212 XXXXXXXXXXXXXFPFDYIDTEFNNFSSSGISEHDINKLPSYGYISVVKLLNCGATQEDC 391
                          F    T      +      +IN LP++      ++     ++ D 
Sbjct: 57  LHRLR----------FRPTPTRRLQSLTDAFLPREINNLPNF------RITKGSVSEPDS 100

Query: 392 -CAICLDGFRENERFRILPGCKHVFHVGCIDVWLMKVSACPTCRGVVELN 538
            CA+CLDGFR  +  R L  C HVFH  CID WL+KV+ CPTCR  V  N
Sbjct: 101 RCAVCLDGFRNGQWRRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSN 150


>dbj|BAH56864.1| AT2G18670 [Arabidopsis thaliana]
          Length = 173

 Score = 95.9 bits (237), Expect = 1e-17
 Identities = 53/157 (33%), Positives = 72/157 (45%)
 Frame = +2

Query: 65  PQRAQRKPKPKFLSFFLQSIIMLCIITLFFLFLGIATVFIIHICIAGXXXXXXXXXXXXX 244
           P     KPK + LS FL  +IM  I  LF + +GIA+V I+ + ++              
Sbjct: 10  PSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPLLLSSLHRHHRRRRRNRR 69

Query: 245 XXFPFDYIDTEFNNFSSSGISEHDINKLPSYGYISVVKLLNCGATQEDCCAICLDGFREN 424
                          SS G+S   + KLP + +       +     E  C +C DGFR+ 
Sbjct: 70  QE-------------SSDGLSSRFVKKLPQFKFSEP----STYTRYESDCVVCFDGFRQG 112

Query: 425 ERFRILPGCKHVFHVGCIDVWLMKVSACPTCRGVVEL 535
           +  R LPGC HVFH  C+D WL+K S CP CR  V L
Sbjct: 113 QWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRL 149


>ref|NP_179457.1| RING-H2 finger protein ATL56 [Arabidopsis thaliana]
           gi|75339071|sp|Q9ZV51.1|ATL56_ARATH RecName:
           Full=RING-H2 finger protein ATL56
           gi|4185133|gb|AAD08936.1| putative RING zinc finger
           protein [Arabidopsis thaliana]
           gi|15450663|gb|AAK96603.1| At2g18670/MSF3.5 [Arabidopsis
           thaliana] gi|20466087|gb|AAM19965.1| At2g18670/MSF3.5
           [Arabidopsis thaliana] gi|66865918|gb|AAY57593.1| RING
           finger family protein [Arabidopsis thaliana]
           gi|330251697|gb|AEC06791.1| RING-H2 finger protein ATL56
           [Arabidopsis thaliana]
          Length = 181

 Score = 95.9 bits (237), Expect = 1e-17
 Identities = 53/157 (33%), Positives = 72/157 (45%)
 Frame = +2

Query: 65  PQRAQRKPKPKFLSFFLQSIIMLCIITLFFLFLGIATVFIIHICIAGXXXXXXXXXXXXX 244
           P     KPK + LS FL  +IM  I  LF + +GIA+V I+ + ++              
Sbjct: 18  PSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPLLLSSLHRHHRRRRRNRR 77

Query: 245 XXFPFDYIDTEFNNFSSSGISEHDINKLPSYGYISVVKLLNCGATQEDCCAICLDGFREN 424
                          SS G+S   + KLP + +       +     E  C +C DGFR+ 
Sbjct: 78  QE-------------SSDGLSSRFVKKLPQFKFSEP----STYTRYESDCVVCFDGFRQG 120

Query: 425 ERFRILPGCKHVFHVGCIDVWLMKVSACPTCRGVVEL 535
           +  R LPGC HVFH  C+D WL+K S CP CR  V L
Sbjct: 121 QWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRL 157