BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010258
         (751 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282635.1| PREDICTED: putative exosome complex componen...   311   1e-82
ref|XP_002318044.1| predicted protein [Populus trichocarpa] gi|1...   297   1e-78
ref|XP_002511406.1| Exosome complex exonuclease RRP40, putative ...   288   6e-76
ref|XP_004138110.1| PREDICTED: putative exosome complex componen...   285   5e-75
ref|XP_002456088.1| hypothetical protein SORBIDRAFT_03g030230 [S...   285   7e-75

>ref|XP_002282635.1| PREDICTED: putative exosome complex component rrp40 [Vitis
           vinifera] gi|297733775|emb|CBI15022.3| unnamed protein
           product [Vitis vinifera]
          Length = 237

 Score =  311 bits (796), Expect = 1e-82
 Identities = 156/176 (88%), Positives = 165/176 (93%)
 Frame = -2

Query: 750 VESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNMPKFEVGK 571
           VESS KRYVPCVEDTVLGIVVD KADNFLVDIKGP LAFLPVLAFEGG+RRN+PKFE G 
Sbjct: 62  VESSQKRYVPCVEDTVLGIVVDSKADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEAGT 121

Query: 570 LLYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEAL 391
           LLYVRVVKAN  MNPELSCTD +GKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEAL
Sbjct: 122 LLYVRVVKANTGMNPELSCTDASGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEAL 181

Query: 390 GKKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ 223
           GKKLSFEIAVGLNGRVWVNA SPSTVILV+NAIM SESL+ VQQ+IMV+KL+QR+Q
Sbjct: 182 GKKLSFEIAVGLNGRVWVNASSPSTVILVANAIMNSESLSVVQQKIMVDKLLQRIQ 237


>ref|XP_002318044.1| predicted protein [Populus trichocarpa] gi|118482713|gb|ABK93275.1|
           unknown [Populus trichocarpa]
           gi|222858717|gb|EEE96264.1| predicted protein [Populus
           trichocarpa]
          Length = 242

 Score =  297 bits (761), Expect = 1e-78
 Identities = 146/176 (82%), Positives = 161/176 (91%)
 Frame = -2

Query: 750 VESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNMPKFEVGK 571
           VE+S KRYVPC ED+VLGIVVD K+DNFL+DIKGP LAFLPVLAFEGG+RRN+PKFE G 
Sbjct: 65  VETSQKRYVPCAEDSVLGIVVDSKSDNFLIDIKGPALAFLPVLAFEGGTRRNIPKFEAGT 124

Query: 570 LLYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEAL 391
           LLYVRVVKAN  MNPELSCTD +GKAAEFG LKDGYMFE STGLSRMLLSSPTCPVLEAL
Sbjct: 125 LLYVRVVKANPGMNPELSCTDASGKAAEFGALKDGYMFECSTGLSRMLLSSPTCPVLEAL 184

Query: 390 GKKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ 223
           GKKLSFEIAVGLNGRVWVNA SPS VI+V+NAIM SE+L+GVQQ+IM EKL+Q++Q
Sbjct: 185 GKKLSFEIAVGLNGRVWVNANSPSIVIIVANAIMNSETLSGVQQKIMAEKLLQKIQ 240


>ref|XP_002511406.1| Exosome complex exonuclease RRP40, putative [Ricinus communis]
           gi|223550521|gb|EEF52008.1| Exosome complex exonuclease
           RRP40, putative [Ricinus communis]
          Length = 234

 Score =  288 bits (738), Expect = 6e-76
 Identities = 141/179 (78%), Positives = 161/179 (89%)
 Frame = -2

Query: 750 VESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNMPKFEVGK 571
           VESS+KRY+PC ED+VLGIVVD KA+NFLVDIKGP +AFLPVLAFEGG+RRN+PKFE G 
Sbjct: 37  VESSHKRYMPCAEDSVLGIVVDSKAENFLVDIKGPAMAFLPVLAFEGGTRRNVPKFEAGT 96

Query: 570 LLYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEAL 391
           LLYVRVVKAN  MNPELSCTD +GKA EFG LKDGYMFE STGLSRMLLSSPTCPVLEAL
Sbjct: 97  LLYVRVVKANPGMNPELSCTDASGKAVEFGVLKDGYMFECSTGLSRMLLSSPTCPVLEAL 156

Query: 390 GKKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ*CF 214
           GKKLSFEIAVG+NGRVWVNA SPST+I+V+NAIM SE+L+ VQQ+IMV+ L+ +++  F
Sbjct: 157 GKKLSFEIAVGINGRVWVNATSPSTIIVVANAIMNSETLSAVQQKIMVDNLLDKIRSTF 215


>ref|XP_004138110.1| PREDICTED: putative exosome complex component rrp40-like [Cucumis
           sativus] gi|449477413|ref|XP_004155016.1| PREDICTED:
           putative exosome complex component rrp40-like [Cucumis
           sativus]
          Length = 243

 Score =  285 bits (730), Expect = 5e-75
 Identities = 140/176 (79%), Positives = 160/176 (90%)
 Frame = -2

Query: 750 VESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNMPKFEVGK 571
           VESS KRYVPC ED VLGIV+D +ADNFLVDIKGP+LAFLPVLAFEGG+RRN+PKFE+G 
Sbjct: 65  VESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGA 124

Query: 570 LLYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEAL 391
           LLYVRVVK N  MNPEL+CTD +GKAA FG LKDGYMFE STGLSRMLLSSP+CPVLE+L
Sbjct: 125 LLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESL 184

Query: 390 GKKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRVQ 223
           GKKLSFE AVGLNGRVWVNA+SPST+I+VSNAI+ SE+L+GVQQRIMV+KL+  ++
Sbjct: 185 GKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240


>ref|XP_002456088.1| hypothetical protein SORBIDRAFT_03g030230 [Sorghum bicolor]
           gi|241928063|gb|EES01208.1| hypothetical protein
           SORBIDRAFT_03g030230 [Sorghum bicolor]
          Length = 239

 Score =  285 bits (729), Expect = 7e-75
 Identities = 140/175 (80%), Positives = 159/175 (90%)
 Frame = -2

Query: 750 VESSNKRYVPCVEDTVLGIVVDQKADNFLVDIKGPTLAFLPVLAFEGGSRRNMPKFEVGK 571
           +E+S KRY+P VEDTVLGIVVD K DNFLVDIKGP LAFLPVLAFEGG+RRN+PKFE+G 
Sbjct: 64  IENSQKRYIPSVEDTVLGIVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFEIGT 123

Query: 570 LLYVRVVKANADMNPELSCTDVNGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEAL 391
           L+Y RVVKAN+ MNPELSC D +GKAAEFG LKDGYMF++STG+SRMLLSSPTCPVLEAL
Sbjct: 124 LIYARVVKANSIMNPELSCMDASGKAAEFGQLKDGYMFDTSTGMSRMLLSSPTCPVLEAL 183

Query: 390 GKKLSFEIAVGLNGRVWVNAESPSTVILVSNAIMTSESLTGVQQRIMVEKLMQRV 226
           GKKLSFEIAVGLNGRVWVNA + STVILVSNAIM SESL+G++QR MVE L++R+
Sbjct: 184 GKKLSFEIAVGLNGRVWVNAPAASTVILVSNAIMRSESLSGIKQRAMVENLLERL 238