BLASTX nr result
ID: Coptis21_contig00010171
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00010171
(2631 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFK49467.1| unknown [Lotus japonicus] 322 1e-92
ref|NP_001239618.1| uncharacterized protein LOC100788480 [Glycin... 320 8e-90
ref|XP_002275293.1| PREDICTED: ribosomal RNA small subunit methy... 325 8e-90
emb|CBI30112.3| unnamed protein product [Vitis vinifera] 322 1e-88
ref|XP_002273311.1| PREDICTED: ribosomal RNA small subunit methy... 322 2e-88
>gb|AFK49467.1| unknown [Lotus japonicus]
Length = 272
Score = 322 bits (826), Expect(2) = 1e-92
Identities = 169/247 (68%), Positives = 195/247 (78%), Gaps = 2/247 (0%)
Frame = -3
Query: 1135 MVRPFAVKGSRKRKKRDESY-KXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAGIPITPSD 959
M RPF +KG RKRK ++ Y + +L GIPI PSD
Sbjct: 1 MTRPFGMKG-RKRKDKEAKYDREEDEDEQVQPKRPMLQNAEVAAANEEDELVGIPIMPSD 59
Query: 958 QKSKS-GVIFILERASLEVAKVGKTYQILNSDDHANFLRKHNKNPGDYRPDIAHQALLAI 782
KS + VIFILERASLEVAKVGKTYQ+LNSDDHANFLRK+NKNPGDYRPDI HQALL+I
Sbjct: 60 HKSDNPNVIFILERASLEVAKVGKTYQLLNSDDHANFLRKNNKNPGDYRPDITHQALLSI 119
Query: 781 LDSPLNKAGRLRALYVKTEKGVLFEVKPHVRMPRTFKRFCGVMLQLLQKLSISATSKREK 602
LDSPLNKAGRL+A+Y+KTEKGVL EVKP+VR+PRTFKRF GVMLQLLQKLSISA K EK
Sbjct: 120 LDSPLNKAGRLQAVYIKTEKGVLIEVKPYVRIPRTFKRFSGVMLQLLQKLSISAAGKHEK 179
Query: 601 LLRVIKNPVTQHLPVNSRKIGLSYSSEKLVQLQDYVATASNDVNLVFVVGAMAHGKIDKE 422
LLR IKNPVTQ+LPVNSRKIGLS+SSEKLV + DYV+T +D+NLVFVVGAMAHGK++ +
Sbjct: 180 LLRTIKNPVTQYLPVNSRKIGLSFSSEKLVNMNDYVSTVPSDMNLVFVVGAMAHGKVETD 239
Query: 421 YTDDFIS 401
YT+D+I+
Sbjct: 240 YTEDYIA 246
Score = 46.6 bits (109), Expect(2) = 1e-92
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = -2
Query: 329 VSGYPLSAACCIARICNTLELKWRI 255
VSGYPLSAA CI RICN LE KW+I
Sbjct: 247 VSGYPLSAAYCITRICNALEAKWKI 271
>ref|NP_001239618.1| uncharacterized protein LOC100788480 [Glycine max]
gi|255636540|gb|ACU18608.1| unknown [Glycine max]
Length = 276
Score = 320 bits (820), Expect(2) = 8e-90
Identities = 165/250 (66%), Positives = 196/250 (78%), Gaps = 5/250 (2%)
Frame = -3
Query: 1135 MVRPFAVKGSRKRK----KRDESYKXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAGIPIT 968
M RP+ VKG RKRK K DE + +L+GIPIT
Sbjct: 1 MTRPYGVKGGRKRKHAEPKYDEEDQETQPKKAVVEVEHNKEEEQQQQTPEGDELSGIPIT 60
Query: 967 PSDQKS-KSGVIFILERASLEVAKVGKTYQILNSDDHANFLRKHNKNPGDYRPDIAHQAL 791
PS+ + K VIFILE+ASLEVAKVGKTYQ+LNSDDHANFLRK+NKNPGDYRPDI HQ+L
Sbjct: 61 PSENNTNKPNVIFILEKASLEVAKVGKTYQLLNSDDHANFLRKNNKNPGDYRPDITHQSL 120
Query: 790 LAILDSPLNKAGRLRALYVKTEKGVLFEVKPHVRMPRTFKRFCGVMLQLLQKLSISATSK 611
L+ILDSPLNKAGRLR++Y++TEKGVL EVKP VR+PRTFKRF GVML+LLQKLSISA K
Sbjct: 121 LSILDSPLNKAGRLRSVYIRTEKGVLIEVKPFVRIPRTFKRFAGVMLELLQKLSISAVGK 180
Query: 610 REKLLRVIKNPVTQHLPVNSRKIGLSYSSEKLVQLQDYVATASNDVNLVFVVGAMAHGKI 431
REKLLR IKNPVTQ+LP+NSRKIGLSYSSEKLV + DYV+T ++++LVFVVGAMAHGKI
Sbjct: 181 REKLLRTIKNPVTQYLPINSRKIGLSYSSEKLVDMDDYVSTVPSNMDLVFVVGAMAHGKI 240
Query: 430 DKEYTDDFIS 401
+ +YT+D+++
Sbjct: 241 ETDYTEDYVA 250
Score = 39.7 bits (91), Expect(2) = 8e-90
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = -2
Query: 329 VSGYPLSAACCIARICNTLELKWRI 255
+SGYPLSAA CI RI LE KW+I
Sbjct: 251 ISGYPLSAAYCITRITGALERKWKI 275
>ref|XP_002275293.1| PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Vitis
vinifera] gi|296085405|emb|CBI29137.3| unnamed protein
product [Vitis vinifera]
Length = 271
Score = 325 bits (833), Expect(2) = 8e-90
Identities = 167/246 (67%), Positives = 197/246 (80%), Gaps = 1/246 (0%)
Frame = -3
Query: 1135 MVRPFAVKGSRKRKKRDESY-KXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAGIPITPSD 959
MVRP+A+KG KRKKR+E+Y + +L GIP+ PS+
Sbjct: 1 MVRPYAIKG-HKRKKREENYDREEVEQLLEEETAATATQDEKKAEEVTLELPGIPLVPSN 59
Query: 958 QKSKSGVIFILERASLEVAKVGKTYQILNSDDHANFLRKHNKNPGDYRPDIAHQALLAIL 779
+K+GV FILERA LEVAKVGK+YQ+L+S+DHANFLRK+NKNP +YRPDI HQALL IL
Sbjct: 60 LNNKTGVTFILERACLEVAKVGKSYQLLSSEDHANFLRKNNKNPAEYRPDILHQALLTIL 119
Query: 778 DSPLNKAGRLRALYVKTEKGVLFEVKPHVRMPRTFKRFCGVMLQLLQKLSISATSKREKL 599
DSPLNKAGRLRA+YV+TEKGVLFEVKPHVR+PRT+KRF G+MLQLLQKLSI+A KREKL
Sbjct: 120 DSPLNKAGRLRAVYVRTEKGVLFEVKPHVRIPRTYKRFSGIMLQLLQKLSITAVGKREKL 179
Query: 598 LRVIKNPVTQHLPVNSRKIGLSYSSEKLVQLQDYVATASNDVNLVFVVGAMAHGKIDKEY 419
LRVIKNPVTQ+LPVNSRKIG SYSSEK + ++DYVA S+DV+LVFVVGAMAHGKI +Y
Sbjct: 180 LRVIKNPVTQYLPVNSRKIGFSYSSEKSIPMRDYVAAVSDDVDLVFVVGAMAHGKISNDY 239
Query: 418 TDDFIS 401
TDDFI+
Sbjct: 240 TDDFIA 245
Score = 34.7 bits (78), Expect(2) = 8e-90
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 329 VSGYPLSAACCIARICNTLELKWRI 255
+SGYPLSAA C IC L KW I
Sbjct: 246 ISGYPLSAAWCTYLICGALMQKWNI 270
>emb|CBI30112.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 322 bits (826), Expect(2) = 1e-88
Identities = 166/248 (66%), Positives = 195/248 (78%), Gaps = 1/248 (0%)
Frame = -3
Query: 1141 KKMVRPFAVKGSRKRKKRDESY-KXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAGIPITP 965
++MVRP+ +KG KRK+R+E+Y K +L GIP+ P
Sbjct: 47 QEMVRPYTIKG-HKRKRREENYDKEEVKQLLEEETAATATQDENKAEEITHELPGIPLVP 105
Query: 964 SDQKSKSGVIFILERASLEVAKVGKTYQILNSDDHANFLRKHNKNPGDYRPDIAHQALLA 785
+K+GV FILERA LEVAKVGK+YQ+L+S+DHANFLRK+NKNP DYRPDI HQALL
Sbjct: 106 FKSNNKTGVTFILERACLEVAKVGKSYQLLSSEDHANFLRKNNKNPADYRPDILHQALLT 165
Query: 784 ILDSPLNKAGRLRALYVKTEKGVLFEVKPHVRMPRTFKRFCGVMLQLLQKLSISATSKRE 605
ILDSPLNKAGRLRA+YV+TEKGVLFEVKPHVR+PRT+KRF G+MLQLLQKLSI+A KRE
Sbjct: 166 ILDSPLNKAGRLRAVYVRTEKGVLFEVKPHVRIPRTYKRFSGIMLQLLQKLSITAVGKRE 225
Query: 604 KLLRVIKNPVTQHLPVNSRKIGLSYSSEKLVQLQDYVATASNDVNLVFVVGAMAHGKIDK 425
KLLRVIKNPVTQ+LPVNSRKIG SYSSEK ++DYVA S+DV+LVFVVGAMAHGKI
Sbjct: 226 KLLRVIKNPVTQYLPVNSRKIGFSYSSEKSTPIRDYVAAVSDDVDLVFVVGAMAHGKISN 285
Query: 424 EYTDDFIS 401
+YTDDFI+
Sbjct: 286 DYTDDFIA 293
Score = 33.5 bits (75), Expect(2) = 1e-88
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 329 VSGYPLSAACCIARICNTLELKWRI 255
+SGYPLSA+ C IC L KW I
Sbjct: 294 ISGYPLSASWCTYLICGALMQKWNI 318
>ref|XP_002273311.1| PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Vitis
vinifera]
Length = 271
Score = 322 bits (824), Expect(2) = 2e-88
Identities = 166/246 (67%), Positives = 193/246 (78%), Gaps = 1/246 (0%)
Frame = -3
Query: 1135 MVRPFAVKGSRKRKKRDESY-KXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAGIPITPSD 959
MVRP+ +KG KRK+R+E+Y K +L GIP+ P
Sbjct: 1 MVRPYTIKG-HKRKRREENYDKEEVKQLLEEETAATATQDENKAEEITHELPGIPLVPFK 59
Query: 958 QKSKSGVIFILERASLEVAKVGKTYQILNSDDHANFLRKHNKNPGDYRPDIAHQALLAIL 779
+K+GV FILERA LEVAKVGK+YQ+L+S+DHANFLRK+NKNP DYRPDI HQALL IL
Sbjct: 60 SNNKTGVTFILERACLEVAKVGKSYQLLSSEDHANFLRKNNKNPADYRPDILHQALLTIL 119
Query: 778 DSPLNKAGRLRALYVKTEKGVLFEVKPHVRMPRTFKRFCGVMLQLLQKLSISATSKREKL 599
DSPLNKAGRLRA+YV+TEKGVLFEVKPHVR+PRT+KRF G+MLQLLQKLSI+A KREKL
Sbjct: 120 DSPLNKAGRLRAVYVRTEKGVLFEVKPHVRIPRTYKRFSGIMLQLLQKLSITAVGKREKL 179
Query: 598 LRVIKNPVTQHLPVNSRKIGLSYSSEKLVQLQDYVATASNDVNLVFVVGAMAHGKIDKEY 419
LRVIKNPVTQ+LPVNSRKIG SYSSEK ++DYVA S+DV+LVFVVGAMAHGKI +Y
Sbjct: 180 LRVIKNPVTQYLPVNSRKIGFSYSSEKSTPIRDYVAAVSDDVDLVFVVGAMAHGKISNDY 239
Query: 418 TDDFIS 401
TDDFI+
Sbjct: 240 TDDFIA 245
Score = 33.5 bits (75), Expect(2) = 2e-88
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 329 VSGYPLSAACCIARICNTLELKWRI 255
+SGYPLSA+ C IC L KW I
Sbjct: 246 ISGYPLSASWCTYLICGALMQKWNI 270