BLASTX nr result

ID: Coptis21_contig00010125 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010125
         (1244 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269188.1| PREDICTED: protein LURP-one-related 8 [Vitis...   230   5e-58
ref|XP_002266077.1| PREDICTED: protein LURP-one-related 8 [Vitis...   228   2e-57
ref|XP_004137667.1| PREDICTED: protein LURP-one-related 8-like [...   219   9e-55
ref|XP_002323697.1| predicted protein [Populus trichocarpa] gi|2...   213   8e-53
ref|XP_002519976.1| GTP binding protein, putative [Ricinus commu...   212   1e-52

>ref|XP_002269188.1| PREDICTED: protein LURP-one-related 8 [Vitis vinifera]
           gi|296089330|emb|CBI39102.3| unnamed protein product
           [Vitis vinifera]
          Length = 200

 Score =  230 bits (587), Expect = 5e-58
 Identities = 121/199 (60%), Positives = 141/199 (70%), Gaps = 5/199 (2%)
 Frame = +3

Query: 84  MPKVYPNAVAPQALKPA-----SDGQVQVLTVWKKSLLFNCKGFTVFDAKGNLVFRVDNY 248
           M KVYPNA A  +           G   VLTVWKKSLLFNC GFTVFD KGNLVFRVDNY
Sbjct: 1   MTKVYPNATAASSGSEGVKLCIGGGDPAVLTVWKKSLLFNCSGFTVFDGKGNLVFRVDNY 60

Query: 249 LCSNKTEILLMDATGKPLLTIRRKKLTLADNWVVFDGETEVNPLFTVKKQVNLLNSRSLA 428
           +  NK EI+LMDA+GKPLLTIRRK+L+L DNW+V+DGET  NP F ++K +NLL+S+SLA
Sbjct: 61  VAGNKGEIVLMDASGKPLLTIRRKRLSLGDNWLVYDGETAANPRFQMRKHLNLLSSKSLA 120

Query: 429 HXXXXXXXXXXXXXLYKIEGSYNQRCCAVYDEKRKVVAEIKRKXXXXXXXXXXXXXRLVV 608
                         +Y+IEGSY+QRCCAVYDE+R+ VAEIKRK             RL+V
Sbjct: 121 R-VSGGSSSSMRKAMYEIEGSYSQRCCAVYDERRRCVAEIKRKEAMAGVALGVDVFRLIV 179

Query: 609 QPEMDSTVAMALVILLDQM 665
           QPEMD+ VAMALVILLDQM
Sbjct: 180 QPEMDTPVAMALVILLDQM 198


>ref|XP_002266077.1| PREDICTED: protein LURP-one-related 8 [Vitis vinifera]
           gi|147770903|emb|CAN65231.1| hypothetical protein
           VITISV_007600 [Vitis vinifera]
           gi|239056173|emb|CAQ58606.1| unknown gene [Vitis
           vinifera] gi|239056193|emb|CAQ58630.1| Unknown gene
           [Vitis vinifera]
          Length = 216

 Score =  228 bits (581), Expect = 2e-57
 Identities = 126/213 (59%), Positives = 142/213 (66%), Gaps = 16/213 (7%)
 Frame = +3

Query: 84  MPKVYPNAVAPQALKPASDG---------QVQVLTVWKKSLLFNCKGFTVFDAKGNLVFR 236
           M KVYPNA A       S+G            VLTVWKKSLLFNC GFTVFD KGNLVFR
Sbjct: 1   MTKVYPNATAASC---GSEGVNLCIGVGRDAAVLTVWKKSLLFNCNGFTVFDGKGNLVFR 57

Query: 237 VDNYLCSNKTEILLMDATGKPLLTIRRKKLTLADNWVVFDGETEVNPLFTVKKQVNLLNS 416
           VDNY+  +K EI+LMDA+GKPLLTIRRK+L+L DNW+V+DGET  NP F V+K  NLLNS
Sbjct: 58  VDNYVAGHKGEIVLMDASGKPLLTIRRKRLSLGDNWMVYDGETAENPRFQVRKHANLLNS 117

Query: 417 RSLAH-------XXXXXXXXXXXXXLYKIEGSYNQRCCAVYDEKRKVVAEIKRKXXXXXX 575
           +SLA                     +Y+IEGSY+QRCCAVYDE R+ VAEIKRK      
Sbjct: 118 KSLARVSGGGGAGGSSSSSSSPRNAMYEIEGSYSQRCCAVYDETRRCVAEIKRKEAVAGV 177

Query: 576 XXXXXXXRLVVQPEMDSTVAMALVILLDQMCGS 674
                  RLVVQPEMD+ VAMALVILLDQM GS
Sbjct: 178 ALGVDVFRLVVQPEMDTPVAMALVILLDQMFGS 210


>ref|XP_004137667.1| PREDICTED: protein LURP-one-related 8-like [Cucumis sativus]
           gi|449497151|ref|XP_004160327.1| PREDICTED: protein
           LURP-one-related 8-like [Cucumis sativus]
          Length = 199

 Score =  219 bits (559), Expect = 9e-55
 Identities = 115/198 (58%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
 Frame = +3

Query: 84  MPKVYPNAVAPQALKPASDGQVQVLTVWKKSLLFNCKGFTVFDAKGNLVFRVDNYLCSNK 263
           M KV+PN  +       SD    VLTVWKKS+L NC+GFTVF+A+GNLV+RVDNYL  NK
Sbjct: 1   MTKVFPNGPSSSC----SDAIETVLTVWKKSMLLNCEGFTVFNAEGNLVYRVDNYLAGNK 56

Query: 264 TEILLMDATGKPLLTIRRKKLTLADNWVVFDGETEVNPLFTVKKQVNLLNSRSLAH-XXX 440
            EILLMDA G PL TIRRK+L+LAD+WVV++GET  NP F+ +KQ+NLL S+ LA     
Sbjct: 57  GEILLMDAAGNPLFTIRRKRLSLADSWVVYEGETGANPRFSARKQMNLLKSKCLARVVEL 116

Query: 441 XXXXXXXXXXLYKIEGSYNQRCCAVYDEKRKVVAEIKRKXXXXXXXXXXXXXRLVVQPEM 620
                     +Y+IEG Y +RCCAVYDEKR++VAEIKRK             RLVVQP++
Sbjct: 117 AGSWSGKGMSVYEIEGCYGKRCCAVYDEKRRIVAEIKRKEAAGGLSFGTDVFRLVVQPQI 176

Query: 621 DSTVAMALVILLDQMCGS 674
           D+TVAMAL+ILLDQM GS
Sbjct: 177 DTTVAMALLILLDQMFGS 194


>ref|XP_002323697.1| predicted protein [Populus trichocarpa] gi|222868327|gb|EEF05458.1|
           predicted protein [Populus trichocarpa]
          Length = 207

 Score =  213 bits (542), Expect = 8e-53
 Identities = 118/209 (56%), Positives = 143/209 (68%), Gaps = 15/209 (7%)
 Frame = +3

Query: 84  MPKVYPNAVAPQA---------LKPASDG----QVQVLTVWKKSLLFNCKGFTVFDAKGN 224
           M KVYPN VAP           LKPA++        VLTVWKKSLLFNC GFTV+D +GN
Sbjct: 1   MTKVYPN-VAPTTTNKKQQLFNLKPANNALDVDHAVVLTVWKKSLLFNCHGFTVYDGRGN 59

Query: 225 LVFRVDNYLCS--NKTEILLMDATGKPLLTIRRKKLTLADNWVVFDGETEVNPLFTVKKQ 398
           LVFRVDNY+ +  N  EI+LMDA GKPLLTIRRK+L+L DNW+V++GET  NP F VKK 
Sbjct: 60  LVFRVDNYMATSGNNGEIVLMDAAGKPLLTIRRKRLSLGDNWLVYEGETTTNPRFLVKKH 119

Query: 399 VNLLNSRSLAHXXXXXXXXXXXXXLYKIEGSYNQRCCAVYDEKRKVVAEIKRKXXXXXXX 578
           VN+LN++ LAH             +Y+IEGSY QRCCAVYDEK++ VAEIK+K       
Sbjct: 120 VNILNTKCLAH--VSPASGSNKNVVYEIEGSYAQRCCAVYDEKKRRVAEIKQKESVGGVA 177

Query: 579 XXXXXXRLVVQPEMDSTVAMALVILLDQM 665
                 RL+V PEM +++AMA+VILLDQM
Sbjct: 178 FGVDVFRLIVGPEMGTSMAMAMVILLDQM 206


>ref|XP_002519976.1| GTP binding protein, putative [Ricinus communis]
           gi|223540740|gb|EEF42300.1| GTP binding protein,
           putative [Ricinus communis]
          Length = 215

 Score =  212 bits (540), Expect = 1e-52
 Identities = 116/209 (55%), Positives = 143/209 (68%), Gaps = 12/209 (5%)
 Frame = +3

Query: 84  MPKVYPNAVAP-----QALKPAS--DGQVQVLTVWKKSLLFNCKGFTVFDAKGNLVFRVD 242
           M KVYPN  A      + LK +S       VLTVWKKSLLFNC GFTV+D  GNLVFRVD
Sbjct: 1   MTKVYPNIAAASTPVVEKLKSSSLDTADAIVLTVWKKSLLFNCNGFTVYDGSGNLVFRVD 60

Query: 243 NYLCSNKT--EILLMDATGKPLLTIRRKKLTLADNWVVFDGETEVNPLFTVKKQVNLLNS 416
           NY+  +    EI+LMDA GKPLLTIRRK+L+L DNW+V+DGET VNPLF+V+K V +LN+
Sbjct: 61  NYMAGSGANGEIVLMDADGKPLLTIRRKRLSLGDNWLVYDGETAVNPLFSVRKHVKILNT 120

Query: 417 RSLAH---XXXXXXXXXXXXXLYKIEGSYNQRCCAVYDEKRKVVAEIKRKXXXXXXXXXX 587
           +SLAH                +Y+IEGSY+QR CAVYD+K + VAEIK+K          
Sbjct: 121 KSLAHVSGNSSSGSTSNSKNIVYEIEGSYSQRSCAVYDDKHRRVAEIKQKEAVGGVAFGV 180

Query: 588 XXXRLVVQPEMDSTVAMALVILLDQMCGS 674
              RL++ P+MD++VAMA+VILLDQM GS
Sbjct: 181 DVFRLIIGPKMDTSVAMAIVILLDQMFGS 209


Top