BLASTX nr result
ID: Coptis21_contig00010114
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00010114
(1069 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 140 4e-31
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 140 7e-31
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 134 3e-29
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ... 134 4e-29
gb|ADN34130.1| ubiquitin-protein ligase [Cucumis melo subsp. melo] 129 2e-27
>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Length = 389
Score = 140 bits (354), Expect = 4e-31
Identities = 117/358 (32%), Positives = 170/358 (47%), Gaps = 6/358 (1%)
Frame = +1
Query: 13 MEGWLTLPDHLLDLIVERLSL-PDLIRFGCVCEKWRSLCG--PLQFPNHLPWLIVPH-QD 180
M W L LLD I ++ + D +RF VC WR+ P P LPWL++P Q
Sbjct: 1 MADWSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLPQSQP 60
Query: 181 YVTSKPGTMAYDSKDVGFFSLCDGKIYKADIPELTNRRICGSFQGGWLVTVHENSEVQLF 360
+ T +P FFSL K + +PE ++RR GWL+ + E E+ L
Sbjct: 61 HHTHRP-----------FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLL 109
Query: 361 NPFSRSFVNLPPLTEFPGVQGILMRDKKGEVPNLGYSITRLNAPDNYYLPLSYIRDRFIY 540
NP +RS V+LPPL+ FP V D E Y++ R ++ D Y L +RD FI
Sbjct: 110 NPLTRSKVHLPPLSTFPNVVRFNFADVGRE-----YAL-RTSSGDVYTRSLKKMRDSFIK 163
Query: 541 RMVMSSSSVT-SGAIIMALQGMQATLAFYRIGGDQETWTPIALDKMYCFFHDITYYQGNF 717
+ ++SSS S I + + LA R D +WT L+ + D+ +++G F
Sbjct: 164 KTILSSSPANGSDFIAVVILNQTGDLALCRKSDD--SWT--FLEDAQSYAEDVIFHRGLF 219
Query: 718 YAVHNCEHVVVIRGLETPETLPCTERI-ISEPPGKVAYHHRSYILESSGDLLIVLGNFVE 894
YAV+ + V + + R+ I E P + Y++ES +LL+V
Sbjct: 220 YAVNKYGSIAVC------DVSGSSPRVSIIEMPQQFG-GDLQYLVESGEELLLVTRYLDL 272
Query: 895 DKDRNTDNKFQLPPHKTVGFQVYKLDFGSPNKWIEIQSLGDRALFLGYNSSFSLLSSD 1068
D D + ++T FQV +LD +P +W + SLGDRALFLG N S SL S D
Sbjct: 273 TYDVEPDQTSLI--YRTTRFQVCRLDLKAP-RWEVVSSLGDRALFLGENLSLSLSSVD 327
>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
Length = 389
Score = 140 bits (352), Expect = 7e-31
Identities = 117/358 (32%), Positives = 170/358 (47%), Gaps = 6/358 (1%)
Frame = +1
Query: 13 MEGWLTLPDHLLDLIVERLSL-PDLIRFGCVCEKWRSLCG--PLQFPNHLPWLIVPH-QD 180
M W L LLD I ++ + D +RF VC WR+ P P LPWL++P Q
Sbjct: 1 MADWSQLHPELLDFIAKKFKIYTDYVRFRAVCHNWRASVPKTPHHLPTQLPWLMLPQSQP 60
Query: 181 YVTSKPGTMAYDSKDVGFFSLCDGKIYKADIPELTNRRICGSFQGGWLVTVHENSEVQLF 360
+ T +P FFSL K + +PE ++RR GWL+ + E E+ L
Sbjct: 61 HHTHRP-----------FFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLL 109
Query: 361 NPFSRSFVNLPPLTEFPGVQGILMRDKKGEVPNLGYSITRLNAPDNYYLPLSYIRDRFIY 540
NP +RS V+LPPL+ FP V D E Y++ R ++ D Y L +RD FI
Sbjct: 110 NPLTRSKVHLPPLSTFPNVVRFNFADVGRE-----YAL-RTSSGDVYTRSLKKMRDSFIK 163
Query: 541 RMVMSSSSVT-SGAIIMALQGMQATLAFYRIGGDQETWTPIALDKMYCFFHDITYYQGNF 717
+ ++SSS S I + + LA R D +WT L+ + D+ +++G F
Sbjct: 164 KTILSSSPANGSDFIAVVILNQTGDLALCRKSDD--SWT--FLEDAQSYSEDVIFHRGLF 219
Query: 718 YAVHNCEHVVVIRGLETPETLPCTERI-ISEPPGKVAYHHRSYILESSGDLLIVLGNFVE 894
YAV+ + V + + R+ I E P + Y++ES +LL+V
Sbjct: 220 YAVNKYGSIAVC------DVSGSSPRVSIIEMPQQFG-GDLQYLVESGEELLLVTRYLDL 272
Query: 895 DKDRNTDNKFQLPPHKTVGFQVYKLDFGSPNKWIEIQSLGDRALFLGYNSSFSLLSSD 1068
D D + ++T FQV +LD +P +W + SLGDRALFLG N S SL S D
Sbjct: 273 TYDVEXDQTSLI--YRTTRFQVCRLDSKAP-RWEVVSSLGDRALFLGENLSLSLSSVD 327
>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
predicted protein [Populus trichocarpa]
Length = 393
Score = 134 bits (338), Expect = 3e-29
Identities = 105/358 (29%), Positives = 174/358 (48%), Gaps = 10/358 (2%)
Frame = +1
Query: 22 WLTLPDHLLDLIVERLSL-PDLIRFGCVCEKWRSLCG--PLQFPNHLPWLIVPHQDYVTS 192
W LP L+++I +++++ D + F VC W+S P P LPWL++P
Sbjct: 5 WTQLPPELIEIISKKITIYSDYLHFQAVCHAWKSSIPKTPNHLPPQLPWLLLPQ------ 58
Query: 193 KPGTMAYDSKDVGFFSLCDGKIYKADIPELTNRRI-CGSFQGGWLVTVHENSEVQLFNPF 369
+ + S FF+L K + ++PE ++R+ CGS G WL+ + ++ + + NP
Sbjct: 59 ---SQSNQSSYRAFFNLSTYKFHSLNLPEASHRKKHCGSSHG-WLIILDDSPSILVINPL 114
Query: 370 SRSFVNLPPLTEFPGVQGILMRDKKGEVPNLGYSITRLNAP-DNYYLPLSYIRDRFIYRM 546
+R ++LP ++ FP V + N+G +N + L +RD FI ++
Sbjct: 115 TRRKIHLPAISSFPNVVSF-------DYANVGREYLLVNPQGERNTASLRQMRDGFIKKV 167
Query: 547 VMSSSSVTSGA---IIMALQGMQATLAFYRIGGDQETWTPIALDKMYCFFHDITYYQGNF 717
VMSSS + + MA+ LA+ + G E W ++ F D+ Y+ G F
Sbjct: 168 VMSSSPLEKKGDFFVAMAILCSTGDLAYCKNG--DECWN--IVENSRSFSEDVIYFNGLF 223
Query: 718 YAVHNCEHVVV--IRGLETPETLPCTERIISEPPGKVAYHHRSYILESSGDLLIVLGNFV 891
YAV+ +VV + G + T R I G + Y L SSGD L+++ ++
Sbjct: 224 YAVNKAGQIVVCDVNGNSPKVSFIETPRQIG---GDMQY------LVSSGDGLLLVTRYL 274
Query: 892 EDKDRNTDNKFQLPPHKTVGFQVYKLDFGSPNKWIEIQSLGDRALFLGYNSSFSLLSS 1065
+ D +F + +KT F+V+KLD P +W + SLGD LF+G NSS +L +S
Sbjct: 275 D-----LDVEFDIFIYKTARFEVFKLDLNGP-RWERVTSLGDMMLFIGENSSLALSAS 326
>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 398
Score = 134 bits (337), Expect = 4e-29
Identities = 105/366 (28%), Positives = 184/366 (50%), Gaps = 17/366 (4%)
Frame = +1
Query: 22 WLTLPDHLLDLIVERLSL-PDLIRFGCVCEKWRSLCG--PLQFPNHLPWLIVPHQDYVTS 192
W LP L+++I + L++ D + VC WR P P LPWL++P ++
Sbjct: 5 WSQLPPELIEIISKGLTIYSDYLYSRAVCHAWRFSIPKTPNHLPPQLPWLMLPQSQSQSN 64
Query: 193 KPGTMAYDSKDVGFFSLCDGKIYKADIPELTNR-RICGSFQGGWLVTVHENSEVQLFNPF 369
+ FFSL K + ++PE++ R R CGS G WL+ + + + L NP
Sbjct: 65 QSRR--------AFFSLSTNKFHFLNLPEVSYRKRHCGSSHG-WLMILDDTPTILLINPL 115
Query: 370 SRSFVNLPPLTEFPGVQGILMRDKKGEVPNLGYSITRLNAPDNYYLPLSYIRDRFIYRMV 549
+R+ ++LPPL+ FP V D E Y++ L + + L +RD FI ++V
Sbjct: 116 TRAKLSLPPLSSFPNVISFNYSDIGRE-----YALRNL-LGERVTVSLRQMRDSFIRKVV 169
Query: 550 MSSSSV-TSGAIIMALQGMQATLAFYRIGGDQETWTPIALDKMYCFFHDITYYQGNFYAV 726
+SSS + + +++A+ LA+ R G ++W+ + + +C D+ + G FYAV
Sbjct: 170 LSSSPLKDNNFVVIAILNQTDDLAYCRNG--DKSWSLVENARSFC--EDVIFVNGMFYAV 225
Query: 727 HNCEHVVV---------IRGLETPETLPCTERIISEPPGKVAYHHRSYILESSGDLLIVL 879
+ +V+ + +ETP + G + Y L +SGD L+++
Sbjct: 226 NKAGQIVICDISSDSPRVSFMETPR----------QAGGDMQY------LVNSGDELLLV 269
Query: 880 GNFVEDKDRNTDNKFQLPPH---KTVGFQVYKLDFGSPNKWIEIQSLGDRALFLGYNSSF 1050
++ D + D+ + PH +T+ F+V++LD+ P +W+ + +LGD+ALF+G NSS
Sbjct: 270 TRYL-DLEYEFDHP-DMEPHLIYRTIRFEVFRLDWNGP-QWLRMSTLGDKALFIGENSSL 326
Query: 1051 SLLSSD 1068
SL ++D
Sbjct: 327 SLSATD 332
>gb|ADN34130.1| ubiquitin-protein ligase [Cucumis melo subsp. melo]
Length = 392
Score = 129 bits (323), Expect = 2e-27
Identities = 107/360 (29%), Positives = 174/360 (48%), Gaps = 8/360 (2%)
Frame = +1
Query: 13 MEGWLTLPDHLLDLIVERLSL-PDLIRFGCVCEKWRSLCG--PLQFPNHLPWLIVPHQDY 183
M W LP LL I + L++ D +RF VC+ WRS P + P LP LI+P
Sbjct: 1 MADWTELPPDLLQQISDYLTVYSDYLRFRVVCQSWRSSVPKIPHRLPPQLPCLIIP---- 56
Query: 184 VTSKPGTMAYDSKDVGFFSLCDGKIYKADIPELTNR-RICGSFQGGWLVTVHENSEVQLF 360
Y G F+ D KI+ +PE + R R CGS G WL + E + L
Sbjct: 57 --------LYHDCRCGLFNFSDNKIHFLYLPEASLRKRPCGSSHG-WLTILDETPSILLL 107
Query: 361 NPFSRSFVNLPPLTEFPGVQGILMRDKKGEVPNLGYS-ITRLNAPDNYYLPLSYIRDRFI 537
NP +R+ LPPL+ FP V + +G + R Y L +RD F+
Sbjct: 108 NPLTRAKFRLPPLSTFPNVVSF-------DYSRVGREYLIRTPTGHIYTRNLRQMRDSFV 160
Query: 538 YRMVMSSS-SVTSGAIIMALQGMQATLAFYRIGGDQETWTPIALDKMYCFFHDITYYQGN 714
++V+SSS S + + +A+ LAF R GG +WT + C D+ Y G
Sbjct: 161 KKIVLSSSPSNQNDFLAVAILNHSGDLAFCRSGGG--SWTFVDDAPSDC--EDVIYTDGV 216
Query: 715 FYAV--HNCEHVVVIRGLETPETLPCTERIISEPPGKVAYHHRSYILESSGDLLIVLGNF 888
FYAV + ++ +RG + +L TER ++ G + Y L G L+++ +
Sbjct: 217 FYAVDKYGVVSLMDLRGSRSQVSLVATERQLA---GDIQY------LVRLGQELLLVSRY 267
Query: 889 VEDKDRNTDNKFQLPPHKTVGFQVYKLDFGSPNKWIEIQSLGDRALFLGYNSSFSLLSSD 1068
++ + D++ ++TV F+V+++++ P +W ++++L + ALF+G NSS + ++D
Sbjct: 268 LDIVNDGMDDELISVMYRTVRFEVFRMEWEGP-RWEKVENLNEMALFVGGNSSMAFSAAD 326