BLASTX nr result

ID: Coptis21_contig00010110 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00010110
         (590 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262887.1| PREDICTED: uncharacterized protein LOC100258...   101   1e-19
ref|XP_003606613.1| Mitochondrial ATP synthase subunit [Medicago...    99   4e-19
ref|XP_002531373.1| conserved hypothetical protein [Ricinus comm...    99   4e-19
ref|XP_002316297.1| predicted protein [Populus trichocarpa] gi|1...    99   4e-19
ref|XP_002311158.1| predicted protein [Populus trichocarpa] gi|1...    99   5e-19

>ref|XP_002262887.1| PREDICTED: uncharacterized protein LOC100258053 [Vitis vinifera]
          Length = 55

 Score =  101 bits (251), Expect = 1e-19
 Identities = 43/52 (82%), Positives = 46/52 (88%)
 Frame = -2

Query: 532 FDPWPVFFKREWKRTWPFLVGFAVTGTIITKMSLNLTEEDKKNSPFAQKHKR 377
           FDPWPVFF+REW R WPFLVGFA+TGTIITK SL LTEED KNSPF Q+HKR
Sbjct: 4   FDPWPVFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKR 55


>ref|XP_003606613.1| Mitochondrial ATP synthase subunit [Medicago truncatula]
           gi|355507668|gb|AES88810.1| Mitochondrial ATP synthase
           subunit [Medicago truncatula]
           gi|388518417|gb|AFK47270.1| unknown [Medicago
           truncatula]
          Length = 55

 Score = 99.4 bits (246), Expect = 4e-19
 Identities = 43/52 (82%), Positives = 45/52 (86%)
 Frame = -2

Query: 532 FDPWPVFFKREWKRTWPFLVGFAVTGTIITKMSLNLTEEDKKNSPFAQKHKR 377
           FDPWPVFFKREWKRTWPFLVGFAVTG ++TK SL LTEED KNS F Q HKR
Sbjct: 4   FDPWPVFFKREWKRTWPFLVGFAVTGALVTKFSLGLTEEDAKNSKFVQHHKR 55


>ref|XP_002531373.1| conserved hypothetical protein [Ricinus communis]
           gi|223529033|gb|EEF31021.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 57

 Score = 99.4 bits (246), Expect = 4e-19
 Identities = 43/52 (82%), Positives = 47/52 (90%)
 Frame = -2

Query: 532 FDPWPVFFKREWKRTWPFLVGFAVTGTIITKMSLNLTEEDKKNSPFAQKHKR 377
           FDPWPVFFKRE+ R WPFLVGFA+TGTIITK+SL LTEED KNSPF Q+HKR
Sbjct: 5   FDPWPVFFKREFNRNWPFLVGFAITGTIITKLSLGLTEEDAKNSPFVQRHKR 56


>ref|XP_002316297.1| predicted protein [Populus trichocarpa] gi|118483973|gb|ABK93874.1|
           unknown [Populus trichocarpa]
           gi|118485005|gb|ABK94367.1| unknown [Populus
           trichocarpa] gi|222865337|gb|EEF02468.1| predicted
           protein [Populus trichocarpa]
          Length = 56

 Score = 99.4 bits (246), Expect = 4e-19
 Identities = 41/52 (78%), Positives = 46/52 (88%)
 Frame = -2

Query: 532 FDPWPVFFKREWKRTWPFLVGFAVTGTIITKMSLNLTEEDKKNSPFAQKHKR 377
           FDPWPVFF+REW R WPFL GFA+TGT+ITK SL+LTEED KNSPF Q+HKR
Sbjct: 4   FDPWPVFFRREWNRNWPFLAGFAITGTLITKFSLSLTEEDAKNSPFVQRHKR 55


>ref|XP_002311158.1| predicted protein [Populus trichocarpa] gi|118488031|gb|ABK95836.1|
           unknown [Populus trichocarpa]
           gi|222850978|gb|EEE88525.1| predicted protein [Populus
           trichocarpa]
          Length = 56

 Score = 99.0 bits (245), Expect = 5e-19
 Identities = 41/52 (78%), Positives = 46/52 (88%)
 Frame = -2

Query: 532 FDPWPVFFKREWKRTWPFLVGFAVTGTIITKMSLNLTEEDKKNSPFAQKHKR 377
           FDPWPVFFKREW R WPFLVGFA+TG +ITK SL+LTEED KNSPF Q+HK+
Sbjct: 4   FDPWPVFFKREWNRNWPFLVGFAITGALITKFSLSLTEEDAKNSPFVQRHKK 55


Top