BLASTX nr result

ID: Coptis21_contig00009810 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009810
         (282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002887484.1| hypothetical protein ARALYDRAFT_895203 [Arab...   127   9e-28
ref|XP_002273836.2| PREDICTED: conserved oligomeric Golgi comple...   127   1e-27
ref|NP_177485.2| sec34-like protein [Arabidopsis thaliana] gi|18...   124   6e-27
gb|AAM98086.1| At1g73430/T9L24_16 [Arabidopsis thaliana]              124   6e-27
gb|AAG30981.1|AC012396_17 unknown protein [Arabidopsis thaliana]      118   4e-25

>ref|XP_002887484.1| hypothetical protein ARALYDRAFT_895203 [Arabidopsis lyrata subsp.
           lyrata] gi|297333325|gb|EFH63743.1| hypothetical protein
           ARALYDRAFT_895203 [Arabidopsis lyrata subsp. lyrata]
          Length = 784

 Score =  127 bits (319), Expect = 9e-28
 Identities = 67/104 (64%), Positives = 79/104 (75%), Gaps = 11/104 (10%)
 Frame = -3

Query: 280 LSNAVVERSFPLNLNR----MPQRQDSSNVSTTN-------QSVMVNTHQFYKWFTDLES 134
           LS+AV ER FP NL       P+   S +V  T+       ++V+VNT+QFYKWFTDLES
Sbjct: 44  LSHAVAERPFPANLVHEHVHRPENGLSVSVEDTHLGDSGAIEAVLVNTNQFYKWFTDLES 103

Query: 133 SMKSETDEKYRHYVHTLTERIQTCDDILHQVDETLHFFNQLQLQ 2
           +MKSET+EKYRHYV+TLTERIQTCDDILHQVDETL  FN+LQLQ
Sbjct: 104 AMKSETEEKYRHYVNTLTERIQTCDDILHQVDETLDLFNELQLQ 147


>ref|XP_002273836.2| PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Vitis
           vinifera] gi|297738499|emb|CBI27744.3| unnamed protein
           product [Vitis vinifera]
          Length = 783

 Score =  127 bits (318), Expect = 1e-27
 Identities = 65/104 (62%), Positives = 81/104 (77%), Gaps = 11/104 (10%)
 Frame = -3

Query: 280 LSNAVVERSFPLNLNR--MPQRQDSSNVSTTN---------QSVMVNTHQFYKWFTDLES 134
           LS+AV ER FP NL+   +  R++  +V+T +         ++V+VNT+QFYKWFTDLES
Sbjct: 43  LSHAVAERPFPANLSHEHISGRENGLSVNTKDNTWEDSGAIETVLVNTNQFYKWFTDLES 102

Query: 133 SMKSETDEKYRHYVHTLTERIQTCDDILHQVDETLHFFNQLQLQ 2
           +MKSET+EKYRHYV+TLTERIQTCDDILHQVD TL  FN+LQLQ
Sbjct: 103 AMKSETEEKYRHYVNTLTERIQTCDDILHQVDATLDLFNELQLQ 146


>ref|NP_177485.2| sec34-like protein [Arabidopsis thaliana]
           gi|186495067|ref|NP_001117595.1| sec34-like protein
           [Arabidopsis thaliana] gi|332197338|gb|AEE35459.1|
           sec34-like protein [Arabidopsis thaliana]
           gi|332197339|gb|AEE35460.1| sec34-like protein
           [Arabidopsis thaliana]
          Length = 784

 Score =  124 bits (312), Expect = 6e-27
 Identities = 66/104 (63%), Positives = 78/104 (75%), Gaps = 11/104 (10%)
 Frame = -3

Query: 280 LSNAVVERSFPLNLNR----MPQRQDSSNVSTTN-------QSVMVNTHQFYKWFTDLES 134
           LS+AV ER FP NL       P+   S +V  T+       ++V+VNT+QFYKWFTDLES
Sbjct: 44  LSHAVAERPFPANLVHEHVHRPENGLSVSVEDTHLGDSGAIEAVLVNTNQFYKWFTDLES 103

Query: 133 SMKSETDEKYRHYVHTLTERIQTCDDILHQVDETLHFFNQLQLQ 2
           +MKSET+EKYRHYV TLTERIQTCD+ILHQVDETL  FN+LQLQ
Sbjct: 104 AMKSETEEKYRHYVSTLTERIQTCDNILHQVDETLDLFNELQLQ 147


>gb|AAM98086.1| At1g73430/T9L24_16 [Arabidopsis thaliana]
          Length = 784

 Score =  124 bits (312), Expect = 6e-27
 Identities = 66/104 (63%), Positives = 78/104 (75%), Gaps = 11/104 (10%)
 Frame = -3

Query: 280 LSNAVVERSFPLNLNR----MPQRQDSSNVSTTN-------QSVMVNTHQFYKWFTDLES 134
           LS+AV ER FP NL       P+   S +V  T+       ++V+VNT+QFYKWFTDLES
Sbjct: 44  LSHAVAERPFPANLVHEHVHRPENGLSVSVEDTHLGDSGAIEAVLVNTNQFYKWFTDLES 103

Query: 133 SMKSETDEKYRHYVHTLTERIQTCDDILHQVDETLHFFNQLQLQ 2
           +MKSET+EKYRHYV TLTERIQTCD+ILHQVDETL  FN+LQLQ
Sbjct: 104 AMKSETEEKYRHYVSTLTERIQTCDNILHQVDETLDLFNELQLQ 147


>gb|AAG30981.1|AC012396_17 unknown protein [Arabidopsis thaliana]
          Length = 745

 Score =  118 bits (296), Expect = 4e-25
 Identities = 66/109 (60%), Positives = 78/109 (71%), Gaps = 16/109 (14%)
 Frame = -3

Query: 280 LSNAVVERSFPLNLNR----MPQRQDSSNVSTTN-------QSVMVNTHQFYKWFTDLES 134
           LS+AV ER FP NL       P+   S +V  T+       ++V+VNT+QFYKWFTDLES
Sbjct: 44  LSHAVAERPFPANLVHEHVHRPENGLSVSVEDTHLGDSGAIEAVLVNTNQFYKWFTDLES 103

Query: 133 SMKSETDEKYRHYVHTLTERIQTCDDILH-----QVDETLHFFNQLQLQ 2
           +MKSET+EKYRHYV TLTERIQTCD+ILH     QVDETL  FN+LQLQ
Sbjct: 104 AMKSETEEKYRHYVSTLTERIQTCDNILHQAGFQQVDETLDLFNELQLQ 152


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