BLASTX nr result
ID: Coptis21_contig00009640
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00009640
(788 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003538429.1| PREDICTED: probable E3 ubiquitin-protein lig... 241 2e-61
emb|CBI31619.3| unnamed protein product [Vitis vinifera] 236 3e-60
ref|XP_002282470.1| PREDICTED: X-linked retinitis pigmentosa GTP... 236 3e-60
ref|XP_004150638.1| PREDICTED: E3 ubiquitin-protein ligase HERC2... 236 4e-60
ref|XP_003519358.1| PREDICTED: probable E3 ubiquitin-protein lig... 232 6e-59
>ref|XP_003538429.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
max]
Length = 480
Score = 241 bits (614), Expect = 2e-61
Identities = 113/137 (82%), Positives = 125/137 (91%)
Frame = -1
Query: 728 SRIRMVSSPHLVPCFESSSYGKDRSSGVAWGSVISEGQVCKAPGNYVKGIACGGRHSALV 549
SRIRMVSSPHLVPC SSSYGKD S+ +A GS+ S+GQ + PG+Y+KGIACGGRHSA++
Sbjct: 259 SRIRMVSSPHLVPCINSSSYGKDISASLARGSMSSDGQNFRVPGSYIKGIACGGRHSAVI 318
Query: 548 TDAGAVVTFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAGLWHTVCISAEGDVYA 369
TDAGAV+TFGWGLYGQCGQGSTDDELSP CVSSLLGI+IEGVAAGLWHTVC SA+GDVYA
Sbjct: 319 TDAGAVLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIRIEGVAAGLWHTVCTSADGDVYA 378
Query: 368 FGGNQFGQLGTGTDQAE 318
FGGNQFGQLGTG DQAE
Sbjct: 379 FGGNQFGQLGTGGDQAE 395
Score = 61.2 bits (147), Expect = 2e-07
Identities = 30/67 (44%), Positives = 41/67 (61%)
Frame = -1
Query: 590 VKGIACGGRHSALVTDAGAVVTFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAGL 411
VK I+CG RH+AL+TD G V +GW YGQ G G D P+ V ++ G + VA G
Sbjct: 411 VKRISCGARHTALITDNGKVFCWGWNKYGQLGLGDVIDRNIPSEV-TIEGCVAKNVACGW 469
Query: 410 WHTVCIS 390
WHT+ ++
Sbjct: 470 WHTLLLA 476
>emb|CBI31619.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 236 bits (603), Expect = 3e-60
Identities = 112/137 (81%), Positives = 123/137 (89%)
Frame = -1
Query: 728 SRIRMVSSPHLVPCFESSSYGKDRSSGVAWGSVISEGQVCKAPGNYVKGIACGGRHSALV 549
SRIRMVSSPH VPC ESSSYGK+RSS +A G+V +EGQ + PG+YVK IACGGRHSA++
Sbjct: 240 SRIRMVSSPHPVPCVESSSYGKERSSALARGNVSTEGQSLRVPGSYVKWIACGGRHSAVI 299
Query: 548 TDAGAVVTFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAGLWHTVCISAEGDVYA 369
TDAGA++ FGWGLYGQCGQGSTDDELSPTCVSSLLGIQIE VAAGLWHTVCISA+GDVY
Sbjct: 300 TDAGALLMFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIERVAAGLWHTVCISADGDVYT 359
Query: 368 FGGNQFGQLGTGTDQAE 318
FGGNQFGQLGTG DQ E
Sbjct: 360 FGGNQFGQLGTGVDQPE 376
Score = 56.6 bits (135), Expect = 6e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Frame = -1
Query: 593 YVKGIACGGRHSALVTDAGAVVTFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAG 414
+ K ++CG RHSA++T G + ++GW YGQ G G D P+ V +L G + VA G
Sbjct: 391 HAKIVSCGARHSAIITADGKMFSWGWNKYGQLGLGDVVDRNIPSQV-TLDGCTPKNVACG 449
Query: 413 LWHTVCIS 390
WHT+ ++
Sbjct: 450 WWHTLLLA 457
>ref|XP_002282470.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Vitis
vinifera]
Length = 484
Score = 236 bits (603), Expect = 3e-60
Identities = 112/137 (81%), Positives = 123/137 (89%)
Frame = -1
Query: 728 SRIRMVSSPHLVPCFESSSYGKDRSSGVAWGSVISEGQVCKAPGNYVKGIACGGRHSALV 549
SRIRMVSSPH VPC ESSSYGK+RSS +A G+V +EGQ + PG+YVK IACGGRHSA++
Sbjct: 263 SRIRMVSSPHPVPCVESSSYGKERSSALARGNVSTEGQSLRVPGSYVKWIACGGRHSAVI 322
Query: 548 TDAGAVVTFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAGLWHTVCISAEGDVYA 369
TDAGA++ FGWGLYGQCGQGSTDDELSPTCVSSLLGIQIE VAAGLWHTVCISA+GDVY
Sbjct: 323 TDAGALLMFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIERVAAGLWHTVCISADGDVYT 382
Query: 368 FGGNQFGQLGTGTDQAE 318
FGGNQFGQLGTG DQ E
Sbjct: 383 FGGNQFGQLGTGVDQPE 399
Score = 56.6 bits (135), Expect = 6e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Frame = -1
Query: 593 YVKGIACGGRHSALVTDAGAVVTFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAG 414
+ K ++CG RHSA++T G + ++GW YGQ G G D P+ V +L G + VA G
Sbjct: 414 HAKIVSCGARHSAIITADGKMFSWGWNKYGQLGLGDVVDRNIPSQV-TLDGCTPKNVACG 472
Query: 413 LWHTVCIS 390
WHT+ ++
Sbjct: 473 WWHTLLLA 480
>ref|XP_004150638.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]
gi|449516435|ref|XP_004165252.1| PREDICTED: E3
ubiquitin-protein ligase HERC2-like [Cucumis sativus]
Length = 491
Score = 236 bits (602), Expect = 4e-60
Identities = 110/137 (80%), Positives = 123/137 (89%)
Frame = -1
Query: 728 SRIRMVSSPHLVPCFESSSYGKDRSSGVAWGSVISEGQVCKAPGNYVKGIACGGRHSALV 549
SRIRMVSSPH +PC ESSS+GKDRS+ +A GS EGQ + PG+YVKGIACGGRHSA V
Sbjct: 270 SRIRMVSSPHPIPCIESSSFGKDRSAALARGSASLEGQGSRIPGSYVKGIACGGRHSAAV 329
Query: 548 TDAGAVVTFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAGLWHTVCISAEGDVYA 369
TDAGA++TFGWGLYGQCGQG TDDELSPTCVSSLLGI+IE VAAGLWHTVCIS++GD+Y+
Sbjct: 330 TDAGALLTFGWGLYGQCGQGCTDDELSPTCVSSLLGIRIESVAAGLWHTVCISSDGDIYS 389
Query: 368 FGGNQFGQLGTGTDQAE 318
FGGNQFGQLGTG DQAE
Sbjct: 390 FGGNQFGQLGTGADQAE 406
>ref|XP_003519358.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
max]
Length = 477
Score = 232 bits (592), Expect = 6e-59
Identities = 108/137 (78%), Positives = 123/137 (89%)
Frame = -1
Query: 728 SRIRMVSSPHLVPCFESSSYGKDRSSGVAWGSVISEGQVCKAPGNYVKGIACGGRHSALV 549
SRIRMVS+PHLVPC +SS Y KDRS+ +A G++ SEGQ + PG+Y+K IACGGRHSA++
Sbjct: 256 SRIRMVSTPHLVPCIDSSYYVKDRSATLARGNMGSEGQTFRIPGSYIKRIACGGRHSAVI 315
Query: 548 TDAGAVVTFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAGLWHTVCISAEGDVYA 369
TDAGA++TFGWGLYGQCGQG TDDELSPTCVSSLLGI IEG+AAGLWHTVC SA+GDVYA
Sbjct: 316 TDAGALLTFGWGLYGQCGQGITDDELSPTCVSSLLGIHIEGIAAGLWHTVCTSADGDVYA 375
Query: 368 FGGNQFGQLGTGTDQAE 318
FGGNQFGQLGTG DQAE
Sbjct: 376 FGGNQFGQLGTGADQAE 392
Score = 60.1 bits (144), Expect = 5e-07
Identities = 29/68 (42%), Positives = 41/68 (60%)
Frame = -1
Query: 593 YVKGIACGGRHSALVTDAGAVVTFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAG 414
+ K I+CG RH+ALVT+ G V +GW YGQ G G D P+ V ++ G + VA G
Sbjct: 407 HAKNISCGARHTALVTEGGKVFCWGWNKYGQLGLGDVIDRNIPSEV-TIEGCVPKNVACG 465
Query: 413 LWHTVCIS 390
WHT+ ++
Sbjct: 466 WWHTLLLA 473