BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009362
         (279 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|2...    67   3e-20
ref|XP_002514778.1| pentatricopeptide repeat-containing protein,...    72   7e-19
emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]    66   6e-18
ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    66   6e-18
ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containi...    59   2e-14

>ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|222847615|gb|EEE85162.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score = 66.6 bits (161), Expect(2) = 3e-20
 Identities = 30/41 (73%), Positives = 38/41 (92%)
 Frame = +1

Query: 118 SPVIRGLCRIKDIEEAKKVLSKMIDEGPPPGSAVFNSIING 240
           S VIRGLCRIKD++ AK++LSKMI EGPPPG+AVFN++I+G
Sbjct: 279 SSVIRGLCRIKDLDGAKQLLSKMIVEGPPPGNAVFNTVISG 319



 Score = 56.6 bits (135), Expect(2) = 3e-20
 Identities = 26/38 (68%), Positives = 31/38 (81%)
 Frame = +3

Query: 9   LVYLISSLCKEDDTVKLALELLNDFSGDASKYAIKHFS 122
           L +LI SLC++D TV LALE+LNDF G+A KYAIK FS
Sbjct: 242 LYFLIGSLCRDDGTVNLALEMLNDFEGEAKKYAIKPFS 279


>ref|XP_002514778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545829|gb|EEF47332.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 584

 Score = 72.0 bits (175), Expect(2) = 7e-19
 Identities = 33/44 (75%), Positives = 39/44 (88%)
 Frame = +1

Query: 118 SPVIRGLCRIKDIEEAKKVLSKMIDEGPPPGSAVFNSIINGLSR 249
           S VIR LCRIKD++ AK +LSKM+DEGPPPG+AVFNSIING S+
Sbjct: 387 SSVIRALCRIKDLDGAKMLLSKMVDEGPPPGNAVFNSIINGYSK 430



 Score = 46.6 bits (109), Expect(2) = 7e-19
 Identities = 22/36 (61%), Positives = 29/36 (80%)
 Frame = +3

Query: 15  YLISSLCKEDDTVKLALELLNDFSGDASKYAIKHFS 122
           +LI  LC++++TVKLALE+L+ FSG   KYAIK FS
Sbjct: 352 FLIGLLCQKNETVKLALEMLDAFSGPKRKYAIKPFS 387


>emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]
          Length = 549

 Score = 65.9 bits (159), Expect(2) = 6e-18
 Identities = 29/42 (69%), Positives = 37/42 (88%)
 Frame = +1

Query: 124 VIRGLCRIKDIEEAKKVLSKMIDEGPPPGSAVFNSIINGLSR 249
           VIRGLCR KD++ AK++L KMI+ GPPPG+AVFN +INGLS+
Sbjct: 353 VIRGLCRSKDVDGAKRLLLKMIEAGPPPGNAVFNFVINGLSK 394



 Score = 49.7 bits (117), Expect(2) = 6e-18
 Identities = 20/36 (55%), Positives = 31/36 (86%)
 Frame = +3

Query: 15  YLISSLCKEDDTVKLALELLNDFSGDASKYAIKHFS 122
           +LI+SLC+ED T+ +A+E+L+DFSG+  KYAIK ++
Sbjct: 316 FLIASLCREDGTISMAVEMLDDFSGEECKYAIKPYT 351


>ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g02650, mitochondrial-like [Vitis vinifera]
          Length = 509

 Score = 65.9 bits (159), Expect(2) = 6e-18
 Identities = 29/42 (69%), Positives = 37/42 (88%)
 Frame = +1

Query: 124 VIRGLCRIKDIEEAKKVLSKMIDEGPPPGSAVFNSIINGLSR 249
           VIRGLCR KD++ AK++L KMI+ GPPPG+AVFN +INGLS+
Sbjct: 370 VIRGLCRSKDVDGAKRLLLKMIEAGPPPGNAVFNFVINGLSK 411



 Score = 49.7 bits (117), Expect(2) = 6e-18
 Identities = 20/36 (55%), Positives = 31/36 (86%)
 Frame = +3

Query: 15  YLISSLCKEDDTVKLALELLNDFSGDASKYAIKHFS 122
           +LI+SLC+ED T+ +A+E+L+DFSG+  KYAIK ++
Sbjct: 333 FLIASLCREDGTISMAVEMLDDFSGEERKYAIKPYT 368


>ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Cucumis sativus]
           gi|449477884|ref|XP_004155152.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Cucumis sativus]
          Length = 479

 Score = 59.3 bits (142), Expect(2) = 2e-14
 Identities = 27/42 (64%), Positives = 33/42 (78%)
 Frame = +1

Query: 124 VIRGLCRIKDIEEAKKVLSKMIDEGPPPGSAVFNSIINGLSR 249
           VIR LCRIKD  +AK +L KMI EGPPPG+A FN++I G S+
Sbjct: 283 VIRSLCRIKDTSKAKTLLQKMIAEGPPPGNAAFNAVICGYSK 324



 Score = 44.7 bits (104), Expect(2) = 2e-14
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = +3

Query: 18  LISSLCKEDDTVKLALELLNDFSGDASKYAIKHF 119
           LI SLC++D+TVKLALE+LNDFS    + AIK +
Sbjct: 247 LIHSLCRDDETVKLALEMLNDFSTGERRRAIKPY 280