BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009351
         (644 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containi...   244   8e-63
gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thal...   223   2e-56
ref|NP_177865.2| pentatricopeptide repeat-containing protein [Ar...   223   2e-56
ref|XP_002520332.1| pentatricopeptide repeat-containing protein,...   222   5e-56
ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containi...   221   9e-56

>ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Cucumis sativus]
           gi|449518241|ref|XP_004166151.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g77405-like [Cucumis sativus]
          Length = 445

 Score =  244 bits (624), Expect = 8e-63
 Identities = 121/192 (63%), Positives = 145/192 (75%), Gaps = 8/192 (4%)
 Frame = -3

Query: 552 LTKQILTAIIQNRSFDTQLSTP--------LWTVHTVSQVLRSIPILFFQSTRSIGRQQS 397
           L  QIL A+++NR FDT + +         LW+  +VS VLRS+P  FFQS RSIG Q+ 
Sbjct: 14  LVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRFFFQSARSIGTQKG 73

Query: 396 FRHRAPLKQRDIRKERDDTRKGVRVFGPASFRDPKKVKLGLDKALEFYYWVETHFGYIHD 217
           FRHR PLKQR +++E    R  V V GP + RDP K KLGL+KALEF+YWVETHFG+ HD
Sbjct: 74  FRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEFFYWVETHFGFQHD 133

Query: 216 DITCKEMALVLAKGNRLNRLWEFLLEMARRRDGKLVSTSTITCLIKVLGEEGLVNEALAL 37
           +ITC+EMA VLA+GN L  LW+FL EM+RR +G LV+T+TITCLIKVLGEEGLVNEAL  
Sbjct: 134 EITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKVLGEEGLVNEALTA 193

Query: 36  FYRMKQFHCKPD 1
           FYRMKQFHCKPD
Sbjct: 194 FYRMKQFHCKPD 205


>gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thaliana]
          Length = 410

 Score =  223 bits (568), Expect = 2e-56
 Identities = 107/189 (56%), Positives = 141/189 (74%), Gaps = 5/189 (2%)
 Frame = -3

Query: 552 LTKQILTAIIQNRSFDTQLSTPL----WTVHTVSQVLRSIPILFFQSTRSIGRQQSFRHR 385
           +  Q++TA+IQNR FD  L++      WT   VS VL SIP  FF S RSIGRQ+ FRHR
Sbjct: 11  IVDQLITAMIQNRPFDAVLASSTVAKPWTQQLVSDVLHSIPRFFFISPRSIGRQKGFRHR 70

Query: 384 APLKQRDIRKERDDTRKGVRVFGPASFRDPKKVKLGLDKALEFYYWVETHFGYIHDDITC 205
           +PLKQR++  E    R  V V GP ++ DPKKV +GL KALEF++W+ETHFG+ H++ITC
Sbjct: 71  SPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIETHFGFDHNEITC 130

Query: 204 KEMALVLAKGNRLNRLWEFLLEMARRRDGK-LVSTSTITCLIKVLGEEGLVNEALALFYR 28
           ++MA +LAKGN    LW+FL +++RR +GK +V+T++ITCL+K LGEEG V EALA FYR
Sbjct: 131 RDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCLGEEGFVKEALATFYR 190

Query: 27  MKQFHCKPD 1
           MK++HCKPD
Sbjct: 191 MKEYHCKPD 199


>ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g77405 gi|91806103|gb|ABE65780.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|332197853|gb|AEE35974.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 458

 Score =  223 bits (568), Expect = 2e-56
 Identities = 107/189 (56%), Positives = 141/189 (74%), Gaps = 5/189 (2%)
 Frame = -3

Query: 552 LTKQILTAIIQNRSFDTQLSTPL----WTVHTVSQVLRSIPILFFQSTRSIGRQQSFRHR 385
           +  Q++TA+IQNR FD  L++      WT   VS VL SIP  FF S RSIGRQ+ FRHR
Sbjct: 11  IVDQLITAMIQNRPFDAVLASSTVAKPWTQQLVSDVLHSIPRFFFISPRSIGRQKGFRHR 70

Query: 384 APLKQRDIRKERDDTRKGVRVFGPASFRDPKKVKLGLDKALEFYYWVETHFGYIHDDITC 205
           +PLKQR++  E    R  V V GP ++ DPKKV +GL KALEF++W+ETHFG+ H++ITC
Sbjct: 71  SPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIETHFGFDHNEITC 130

Query: 204 KEMALVLAKGNRLNRLWEFLLEMARRRDGK-LVSTSTITCLIKVLGEEGLVNEALALFYR 28
           ++MA +LAKGN    LW+FL +++RR +GK +V+T++ITCL+K LGEEG V EALA FYR
Sbjct: 131 RDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCLGEEGFVKEALATFYR 190

Query: 27  MKQFHCKPD 1
           MK++HCKPD
Sbjct: 191 MKEYHCKPD 199


>ref|XP_002520332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540551|gb|EEF42118.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 441

 Score =  222 bits (565), Expect = 5e-56
 Identities = 109/191 (57%), Positives = 147/191 (76%), Gaps = 7/191 (3%)
 Frame = -3

Query: 552 LTKQILTAIIQNRSFDTQLS----TPLWTVHTVSQVLRSIPILFFQSTRSIGRQQSFRHR 385
           L  Q+++ +IQ+R FD QL+    T L + + +S VLRSIP  FFQSTRS+GRQ + RHR
Sbjct: 10  LINQVISLMIQHRPFDIQLASSTTTSLLSSNLISDVLRSIPRFFFQSTRSVGRQSTTRHR 69

Query: 384 APLKQRDIRKERDDTRKGVRVFGPASFRDPKKVKLGLDKALEFYYWVETHFGYIHDDITC 205
           +PLKQR +++E       + + GPA+++DPK+VKLG+ KA+EF+YWVET+  +IH + TC
Sbjct: 70  SPLKQRSLKQETHKHNNKLLILGPAAYKDPKRVKLGVFKAMEFFYWVETNCDFIHTESTC 129

Query: 204 KEMALVLAKGNRLNRLWEFLLEMARRR--DG-KLVSTSTITCLIKVLGEEGLVNEALALF 34
           +EM  VLA+ NRL++LW FL EMA+R   DG KLV+T+ +TCLIKVLGEEGLV EAL+LF
Sbjct: 130 REMGFVLARANRLDKLWNFLQEMAKREVFDGRKLVTTNAVTCLIKVLGEEGLVKEALSLF 189

Query: 33  YRMKQFHCKPD 1
           YRMK++HCKPD
Sbjct: 190 YRMKKYHCKPD 200


>ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Vitis vinifera]
          Length = 432

 Score =  221 bits (563), Expect = 9e-56
 Identities = 111/189 (58%), Positives = 140/189 (74%), Gaps = 3/189 (1%)
 Frame = -3

Query: 558 SPLTKQILTAIIQNRSFDTQLSTPL---WTVHTVSQVLRSIPILFFQSTRSIGRQQSFRH 388
           S L KQ+L A++QN   D   +      WT  +VS+VLRSIP LFFQS RSIGRQ+ FRH
Sbjct: 12  SSLVKQVLAAMVQNCPLDASPNKSCNQPWTTDSVSEVLRSIPRLFFQSPRSIGRQKGFRH 71

Query: 387 RAPLKQRDIRKERDDTRKGVRVFGPASFRDPKKVKLGLDKALEFYYWVETHFGYIHDDIT 208
           R+PLKQR++ +E +   +         +RDP KVKLG++KA+EFY WVET FG+ H+++T
Sbjct: 72  RSPLKQRNLYQEPNKFHR---------YRDPHKVKLGVEKAMEFYSWVETQFGFSHNEMT 122

Query: 207 CKEMALVLAKGNRLNRLWEFLLEMARRRDGKLVSTSTITCLIKVLGEEGLVNEALALFYR 28
           C+EM  VLA+GNRL  LWEFL EMAR+    +V+T+TITCL+KVLGEEGL N+ALA FYR
Sbjct: 123 CREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLGEEGLANQALAAFYR 182

Query: 27  MKQFHCKPD 1
           MKQFHCKPD
Sbjct: 183 MKQFHCKPD 191