BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009321
         (579 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...   179   3e-43
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...   177   1e-42
ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   159   3e-37
ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   159   3e-37
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc...   157   2e-36

>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score =  179 bits (454), Expect = 3e-43
 Identities = 98/175 (56%), Positives = 126/175 (72%), Gaps = 1/175 (0%)
 Frame = -1

Query: 522 SATVKVSKIPLTAIAQELYDFFETTLGQKGTVFACQIFSEHKNWKSKGVGRVQFESLTEL 343
           +ATV+VS IP TAIA++L+DFFE+++G KG+VFAC IFSEHKNWKS+G GRVQFE+    
Sbjct: 8   TATVRVSNIPQTAIAKQLFDFFESSIG-KGSVFACDIFSEHKNWKSRGHGRVQFETSQSK 66

Query: 342 NTVLQLSEQRKLVFQNTLLDITLSPIDIIPRPSVVSNRISEVVLHVGFMVEEDCLTVLEK 163
              L LSEQ KLVF+   L +T S  DII RP  ++ R  + +LH G ++E D + VLE 
Sbjct: 67  LQSLSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVLET 126

Query: 162 WEDVKVEIMPDRKRVEFWVSE-KGEVYKLEVQFEDILDTSVWYLDGEESNALLFK 1
           WE+VK  IMP+RK +EFWVS  KGE Y+LEVQF DI++T    L+ +E  ALL K
Sbjct: 127 WENVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLE-DEKTALLLK 180


>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
           gi|297733815|emb|CBI15062.3| unnamed protein product
           [Vitis vinifera]
          Length = 1127

 Score =  177 bits (448), Expect = 1e-42
 Identities = 93/172 (54%), Positives = 119/172 (69%)
 Frame = -1

Query: 516 TVKVSKIPLTAIAQELYDFFETTLGQKGTVFACQIFSEHKNWKSKGVGRVQFESLTELNT 337
           TVKVS IP TAIA+EL+ F E+ LG   T++A +I +EHKNWKS+G GRVQFE+L     
Sbjct: 8   TVKVSNIPKTAIAKELWSFLESKLGPN-TIYALEIATEHKNWKSRGFGRVQFETLQAKRA 66

Query: 336 VLQLSEQRKLVFQNTLLDITLSPIDIIPRPSVVSNRISEVVLHVGFMVEEDCLTVLEKWE 157
              LS Q  LVF+ + L I+ +  DII RP    N++   VLHVGF+VE+DC+ VLE WE
Sbjct: 67  ADLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLESWE 126

Query: 156 DVKVEIMPDRKRVEFWVSEKGEVYKLEVQFEDILDTSVWYLDGEESNALLFK 1
            VK  +MP+R RVEFWV + GE YKLEV F+D+L++S   L G + NALL K
Sbjct: 127 GVKTLVMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLK 178


>ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
          Length = 1117

 Score =  159 bits (402), Expect = 3e-37
 Identities = 85/173 (49%), Positives = 116/173 (67%)
 Frame = -1

Query: 519 ATVKVSKIPLTAIAQELYDFFETTLGQKGTVFACQIFSEHKNWKSKGVGRVQFESLTELN 340
           +T++VS +P +AIAQ+L +F  + LG   +VFA +IF+E KNWKS+G GRVQF +L    
Sbjct: 7   STLRVSNVPESAIAQDLLNFLNSKLGPD-SVFAIEIFTERKNWKSRGSGRVQFTTLEAKA 65

Query: 339 TVLQLSEQRKLVFQNTLLDITLSPIDIIPRPSVVSNRISEVVLHVGFMVEEDCLTVLEKW 160
             + LS Q  LVF    L  +L   DI+ RP   +NR    VLHVGFM++E+ ++VLE W
Sbjct: 66  KAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESW 125

Query: 159 EDVKVEIMPDRKRVEFWVSEKGEVYKLEVQFEDILDTSVWYLDGEESNALLFK 1
           E VK  IMP+R+R+EFW+  + E YKLEV FE+IL+T+   L  E+ NALL K
Sbjct: 126 EGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLK 178


>ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
           gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
           2 [Cucumis sativus]
          Length = 1117

 Score =  159 bits (402), Expect = 3e-37
 Identities = 85/173 (49%), Positives = 116/173 (67%)
 Frame = -1

Query: 519 ATVKVSKIPLTAIAQELYDFFETTLGQKGTVFACQIFSEHKNWKSKGVGRVQFESLTELN 340
           +T++VS +P +AIAQ+L +F  + LG   +VFA +IF+E KNWKS+G GRVQF +L    
Sbjct: 7   STLRVSNVPESAIAQDLLNFLNSKLGPD-SVFAIEIFTERKNWKSRGSGRVQFTTLEAKA 65

Query: 339 TVLQLSEQRKLVFQNTLLDITLSPIDIIPRPSVVSNRISEVVLHVGFMVEEDCLTVLEKW 160
             + LS Q  LVF    L  +L   DI+ RP   +NR    VLHVGFM++E+ ++VLE W
Sbjct: 66  KAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESW 125

Query: 159 EDVKVEIMPDRKRVEFWVSEKGEVYKLEVQFEDILDTSVWYLDGEESNALLFK 1
           E VK  IMP+R+R+EFW+  + E YKLEV FE+IL+T+   L  E+ NALL K
Sbjct: 126 EGVKAWIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLK 178


>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
           gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
           [Medicago truncatula]
          Length = 1308

 Score =  157 bits (396), Expect = 2e-36
 Identities = 79/176 (44%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
 Frame = -1

Query: 525 KSATVKVSKIPLTAIAQELYDFFETTLGQKGTVFACQIFSEHKNWKSKGVGRVQFESLTE 346
           ++ TV+V+ IP TA A +L  + ETT+G + +VFA +IFS++ NWKS+GVGRVQFE+L  
Sbjct: 7   ETPTVRVTNIPHTATANDLLRYLETTVG-RSSVFALEIFSDYTNWKSRGVGRVQFETLEA 65

Query: 345 LNTVLQLSEQRKLVFQNTLLDITLSPIDIIPRPSVVSNRISEVVLHVGFMVEEDCLTVLE 166
            +  L L+E +KL+  +  L +  S  DIIPRP++  NRI+   L+ GF +  DC++VL+
Sbjct: 66  KSKALTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMSVLQ 125

Query: 165 KWEDVKVEIMPDRKRVEFWVSEKGEVYKLEVQFEDILDTSVWYLD-GEESNALLFK 1
            WE V+  +MP+R+R++FWV+   + +KLE+ FE+IL+   +  D G + NALL K
Sbjct: 126 SWEGVRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLK 181