BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009302
         (267 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_175268.1| 50S ribosomal protein L18 [Arabidopsis thaliana...   122   3e-26
ref|XP_002891426.1| ribosomal protein L18 family protein [Arabid...   122   3e-26
ref|XP_002314349.1| predicted protein [Populus trichocarpa] gi|1...   117   1e-24
ref|XP_002509912.1| 50S ribosomal protein L18, chloroplast precu...   115   3e-24
gb|AFK34990.1| unknown [Lotus japonicus] gi|388495768|gb|AFK3595...   115   5e-24

>ref|NP_175268.1| 50S ribosomal protein L18 [Arabidopsis thaliana]
           gi|73621536|sp|Q9SX68.1|RK18_ARATH RecName: Full=50S
           ribosomal protein L18, chloroplastic; AltName:
           Full=CL18; Flags: Precursor
           gi|5733872|gb|AAD49760.1|AC007932_8 Similar to 50S
           Ribosomal protein L18 from Thermotoga maritima
           gb|AE001798. ESTs gb|AI993387, gb|T75951 and gb|T22182
           come from this gene [Arabidopsis thaliana]
           gi|12484209|gb|AAG54003.1|AF336922_1 putative ribosomal
           protein L18 [Arabidopsis thaliana]
           gi|110740956|dbj|BAE98573.1| hypothetical protein
           [Arabidopsis thaliana] gi|332194156|gb|AEE32277.1| 50S
           ribosomal protein L18 [Arabidopsis thaliana]
          Length = 170

 Score =  122 bits (306), Expect = 3e-26
 Identities = 62/79 (78%), Positives = 71/79 (89%), Gaps = 2/79 (2%)
 Frame = -3

Query: 232 SLVLQARTRT--EDRQARRARIRKKVEGTTERLRLCVFRSNKHMYV*VIDDSKMHTLASA 59
           S+V++A+T+T  EDR AR +RIRKKV GTTER RLCVFRSNKH+YV VIDD+KMHTLASA
Sbjct: 43  SMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASA 102

Query: 58  STVQKPIAEEFDYTSGPTI 2
           ST QKPI+EEFDYTSGPTI
Sbjct: 103 STKQKPISEEFDYTSGPTI 121


>ref|XP_002891426.1| ribosomal protein L18 family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297337268|gb|EFH67685.1| ribosomal protein
           L18 family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 170

 Score =  122 bits (306), Expect = 3e-26
 Identities = 62/79 (78%), Positives = 71/79 (89%), Gaps = 2/79 (2%)
 Frame = -3

Query: 232 SLVLQARTRT--EDRQARRARIRKKVEGTTERLRLCVFRSNKHMYV*VIDDSKMHTLASA 59
           S+V++A+T+T  EDR AR +RIRKKV GTTER RLCVFRSNKH+YV VIDD+KMHTLASA
Sbjct: 43  SMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASA 102

Query: 58  STVQKPIAEEFDYTSGPTI 2
           ST QKPI+EEFDYTSGPTI
Sbjct: 103 STKQKPISEEFDYTSGPTI 121


>ref|XP_002314349.1| predicted protein [Populus trichocarpa] gi|118487426|gb|ABK95541.1|
           unknown [Populus trichocarpa]
           gi|222863389|gb|EEF00520.1| predicted protein [Populus
           trichocarpa]
          Length = 165

 Score =  117 bits (292), Expect = 1e-24
 Identities = 56/73 (76%), Positives = 65/73 (89%)
 Frame = -3

Query: 220 QARTRTEDRQARRARIRKKVEGTTERLRLCVFRSNKHMYV*VIDDSKMHTLASASTVQKP 41
           +A+TR EDR AR  RIRKKVEGT +R RLCVFRSNKH+YV VIDD+KMHTLASAST+QKP
Sbjct: 44  KAKTRREDRTARHIRIRKKVEGTPDRPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKP 103

Query: 40  IAEEFDYTSGPTI 2
            A++FDY+SGPTI
Sbjct: 104 FAQDFDYSSGPTI 116


>ref|XP_002509912.1| 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus
           communis] gi|223549811|gb|EEF51299.1| 50S ribosomal
           protein L18, chloroplast precursor, putative [Ricinus
           communis]
          Length = 164

 Score =  115 bits (289), Expect = 3e-24
 Identities = 61/87 (70%), Positives = 70/87 (80%), Gaps = 2/87 (2%)
 Frame = -3

Query: 256 PKHQQRPTSLVLQARTRT--EDRQARRARIRKKVEGTTERLRLCVFRSNKHMYV*VIDDS 83
           P   Q P  L ++A T+T  E+R AR  RIRKKVEGT ER RL VFRSNKH+YV VIDDS
Sbjct: 29  PTPIQPPRFLRIEANTKTRRENRTARHVRIRKKVEGTPERPRLSVFRSNKHLYVQVIDDS 88

Query: 82  KMHTLASASTVQKPIAEEFDYTSGPTI 2
           KMHTLASAST+QKPI+EEFDY+SGPT+
Sbjct: 89  KMHTLASASTMQKPISEEFDYSSGPTL 115


>gb|AFK34990.1| unknown [Lotus japonicus] gi|388495768|gb|AFK35950.1| unknown
           [Lotus japonicus]
          Length = 162

 Score =  115 bits (287), Expect = 5e-24
 Identities = 59/87 (67%), Positives = 68/87 (78%)
 Frame = -3

Query: 262 NAPKHQQRPTSLVLQARTRTEDRQARRARIRKKVEGTTERLRLCVFRSNKHMYV*VIDDS 83
           + P     P  +  ++RTRT+DR AR ARIRKKVEGT ER RL VFRSNKH+ V VIDD+
Sbjct: 27  STPNPNSLPFVVEAKSRTRTDDRTARHARIRKKVEGTPERPRLAVFRSNKHLAVQVIDDT 86

Query: 82  KMHTLASASTVQKPIAEEFDYTSGPTI 2
           KMHTLASAST+QK IAEEF YT+GPTI
Sbjct: 87  KMHTLASASTMQKAIAEEFSYTAGPTI 113