BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009296
         (497 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabi...   110   1e-22
ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arab...   110   2e-22
ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloropl...   108   3e-22
sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, c...   104   8e-21
ref|XP_002510018.1| 50S ribosomal protein CL25, chloroplast prec...    94   9e-18

>ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabidopsis thaliana]
           gi|75171293|sp|Q9FKP0.1|PSRP6_ARATH RecName: Full=50S
           ribosomal protein 6, chloroplastic; AltName: Full=CL25;
           AltName: Full=Plastid-specific 50S ribosomal protein 6;
           Short=PSRP-6; Flags: Precursor
           gi|10177888|dbj|BAB11220.1| unnamed protein product
           [Arabidopsis thaliana] gi|14517428|gb|AAK62604.1|
           AT5g17870/MPI7_10 [Arabidopsis thaliana]
           gi|20147339|gb|AAM10383.1| AT5g17870/MPI7_10
           [Arabidopsis thaliana] gi|21554906|gb|AAM63726.1|
           plastid-specific ribosomal protein 6 precursor
           (Psrp-6)-like [Arabidopsis thaliana]
           gi|332005097|gb|AED92480.1| plastid-specific 50S
           ribosomal protein 6 [Arabidopsis thaliana]
          Length = 106

 Score =  110 bits (275), Expect = 1e-22
 Identities = 55/83 (66%), Positives = 61/83 (73%), Gaps = 6/83 (7%)
 Frame = +3

Query: 90  MSISALFGTRVVL---KPNLAQFSSPTLGERGA---VIECSSRPQKKGTKHHMKTRPKKT 251
           MS+SA+FGT +V     P L QF  P LG  G    VIECSSRPQKK T HH KTRPKKT
Sbjct: 1   MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60

Query: 252 AKWEIKRRPTVYAPLPPLPSEWS 320
             W+IKR+PTVYAPLPPLP+EWS
Sbjct: 61  QPWDIKRKPTVYAPLPPLPAEWS 83


>ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arabidopsis lyrata subsp.
           lyrata] gi|297317621|gb|EFH48043.1| hypothetical protein
           ARALYDRAFT_488653 [Arabidopsis lyrata subsp. lyrata]
          Length = 108

 Score =  110 bits (274), Expect = 2e-22
 Identities = 54/83 (65%), Positives = 62/83 (74%), Gaps = 6/83 (7%)
 Frame = +3

Query: 90  MSISALFGTRVVL---KPNLAQFSSPTLGERGA---VIECSSRPQKKGTKHHMKTRPKKT 251
           MS+SA+FGT +V     P L QF  PTLG  G    VIECSSRPQKK T HH K+RPKKT
Sbjct: 1   MSVSAIFGTGIVTVAASPVLRQFQVPTLGNGGGLGMVIECSSRPQKKSTAHHRKSRPKKT 60

Query: 252 AKWEIKRRPTVYAPLPPLPSEWS 320
             W+IKR+PTVYAPLPPLP+EW+
Sbjct: 61  QPWDIKRKPTVYAPLPPLPAEWT 83


>ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloroplastic [Vitis vinifera]
          Length = 108

 Score =  108 bits (271), Expect = 3e-22
 Identities = 54/84 (64%), Positives = 63/84 (75%), Gaps = 5/84 (5%)
 Frame = +3

Query: 90  MSISALFGTRVVLKPNLA-----QFSSPTLGERGAVIECSSRPQKKGTKHHMKTRPKKTA 254
           MSISA+FG  V  + + A     + ++P LG   AVIECSSRPQKKGT HHMKTRP+KT 
Sbjct: 1   MSISAIFGAAVPNRCSTAASFGARKAAPRLGGGAAVIECSSRPQKKGTSHHMKTRPRKTQ 60

Query: 255 KWEIKRRPTVYAPLPPLPSEWSFV 326
            W+IKRRPTVYAPLPPLP EW+ V
Sbjct: 61  PWDIKRRPTVYAPLPPLPPEWTVV 84


>sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, chloroplastic; AltName:
           Full=CL25; AltName: Full=Plastid-specific 50S ribosomal
           protein 6; Short=PSRP-6; Flags: Precursor
           gi|7578927|gb|AAF64189.1|AF245292_1 plastid-specific
           ribosomal protein 6 precursor [Spinacia oleracea]
          Length = 116

 Score =  104 bits (259), Expect = 8e-21
 Identities = 54/92 (58%), Positives = 63/92 (68%), Gaps = 13/92 (14%)
 Frame = +3

Query: 90  MSISALFGTRVVLKPNLAQFSS----------PTLGERGA---VIECSSRPQKKGTKHHM 230
           MS+SA+FG RVV  P++ + SS           T G  G     IECSSRPQKKGT HHM
Sbjct: 1   MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHM 60

Query: 231 KTRPKKTAKWEIKRRPTVYAPLPPLPSEWSFV 326
           KTRPKKTA+W+IKR P VY PLPPLP+EW+ V
Sbjct: 61  KTRPKKTARWDIKRGPAVYPPLPPLPAEWTIV 92


>ref|XP_002510018.1| 50S ribosomal protein CL25, chloroplast precursor, putative
           [Ricinus communis] gi|223550719|gb|EEF52205.1| 50S
           ribosomal protein CL25, chloroplast precursor, putative
           [Ricinus communis]
          Length = 126

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 13/92 (14%)
 Frame = +3

Query: 90  MSISALFGTRVVL--KPNLAQF-----SSPTLG------ERGAVIECSSRPQKKGTKHHM 230
           MSIS++FG+ VVL  K +L Q      S+P           G VIECSSRP+KK T HHM
Sbjct: 1   MSISSIFGSPVVLLSKASLKQLNVEVKSAPKTATGNGWYSGGLVIECSSRPKKKATAHHM 60

Query: 231 KTRPKKTAKWEIKRRPTVYAPLPPLPSEWSFV 326
           KTRPKK+  W+I+R+PTVY PLPPLP +W+ V
Sbjct: 61  KTRPKKSQPWDIRRKPTVYPPLPPLPPDWTLV 92