BLASTX nr result

ID: Coptis21_contig00009292 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009292
         (1084 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324968.1| predicted protein [Populus trichocarpa] gi|2...    70   9e-10
gb|AFK38245.1| unknown [Medicago truncatula]                           64   8e-08
ref|XP_002863136.1| hypothetical protein ARALYDRAFT_332982 [Arab...    61   4e-07
gb|AFK33985.1| unknown [Lotus japonicus]                               59   2e-06
ref|NP_001078384.1| protein rotundifolia like 12 [Arabidopsis th...    59   2e-06

>ref|XP_002324968.1| predicted protein [Populus trichocarpa] gi|222866402|gb|EEF03533.1|
           predicted protein [Populus trichocarpa]
          Length = 59

 Score = 70.1 bits (170), Expect = 9e-10
 Identities = 30/39 (76%), Positives = 32/39 (82%)
 Frame = +3

Query: 114 KNSFSKRCSSMVKQQKTRFYILGRCVSMLLCWRSHAIPD 230
           KN F +RC SM KQQKTRFYILGRC+SMLLCW  HAI D
Sbjct: 21  KNGFRRRCLSMAKQQKTRFYILGRCISMLLCWHDHAIRD 59


>gb|AFK38245.1| unknown [Medicago truncatula]
          Length = 45

 Score = 63.5 bits (153), Expect = 8e-08
 Identities = 25/41 (60%), Positives = 32/41 (78%)
 Frame = +3

Query: 108 CRKNSFSKRCSSMVKQQKTRFYILGRCVSMLLCWRSHAIPD 230
           C+K SF+KRC SM KQ K R +I GRC++MLLCW +H+I D
Sbjct: 5   CKKTSFTKRCFSMAKQHKARIHIFGRCLTMLLCWHNHSISD 45


>ref|XP_002863136.1| hypothetical protein ARALYDRAFT_332982 [Arabidopsis lyrata subsp.
           lyrata] gi|297308970|gb|EFH39395.1| hypothetical protein
           ARALYDRAFT_332982 [Arabidopsis lyrata subsp. lyrata]
          Length = 51

 Score = 61.2 bits (147), Expect = 4e-07
 Identities = 27/40 (67%), Positives = 29/40 (72%)
 Frame = +3

Query: 111 RKNSFSKRCSSMVKQQKTRFYILGRCVSMLLCWRSHAIPD 230
           RK SF  RC  M KQQ+TR YIL RCVSMLLCW  H+I D
Sbjct: 12  RKTSFGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHSISD 51


>gb|AFK33985.1| unknown [Lotus japonicus]
          Length = 86

 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 22/49 (44%), Positives = 38/49 (77%)
 Frame = +3

Query: 75  STHYQPRQYQSCRKNSFSKRCSSMVKQQKTRFYILGRCVSMLLCWRSHA 221
           ST++  +  Q  RK +F+++C+ +VK+Q+ RFYI+ RCV+ML+CWR ++
Sbjct: 36  STNFMKKSSQEQRKCAFARKCARLVKEQRARFYIMRRCVTMLICWRDYS 84


>ref|NP_001078384.1| protein rotundifolia like 12 [Arabidopsis thaliana]
           gi|42822053|tpg|DAA02281.1| TPA_exp: DVL10 [Arabidopsis
           thaliana] gi|332657874|gb|AEE83274.1| protein
           rotundifolia like 12 [Arabidopsis thaliana]
          Length = 55

 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 26/40 (65%), Positives = 28/40 (70%)
 Frame = +3

Query: 111 RKNSFSKRCSSMVKQQKTRFYILGRCVSMLLCWRSHAIPD 230
           RK  F  RC  M KQQ+TR YIL RCVSMLLCW  H+I D
Sbjct: 16  RKTRFGDRCLLMAKQQRTRLYILRRCVSMLLCWHDHSISD 55


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