BLASTX nr result
ID: Coptis21_contig00009187
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00009187
(1623 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272359.1| PREDICTED: translation factor GUF1 homolog, ... 853 0.0
sp|A5B4D2.1|GUFP_VITVI RecName: Full=Translation factor GUF1 hom... 853 0.0
ref|XP_003526892.1| PREDICTED: translation factor GUF1 homolog, ... 834 0.0
ref|XP_002873375.1| hypothetical protein ARALYDRAFT_487706 [Arab... 834 0.0
ref|NP_196482.2| GTP-binding protein LepA [Arabidopsis thaliana]... 830 0.0
>ref|XP_002272359.1| PREDICTED: translation factor GUF1 homolog, chloroplastic [Vitis
vinifera] gi|296082645|emb|CBI21650.3| unnamed protein
product [Vitis vinifera]
Length = 680
Score = 853 bits (2205), Expect = 0.0
Identities = 434/514 (84%), Positives = 465/514 (90%), Gaps = 6/514 (1%)
Frame = +2
Query: 89 RRYVCKAASVVGAEETTQSK--DDI----IVGQSRLLKVPISNIRNFSIIAHIDHGKSTL 250
RR ++A V + TQSK D+ + GQ RLLKVPISNIRNF IIAHIDHGKSTL
Sbjct: 42 RRRSLRSAVVAQSTAGTQSKAPSDVDLAAVSGQDRLLKVPISNIRNFCIIAHIDHGKSTL 101
Query: 251 ADKLLQVTGTVEKREMKEQFLDNMDLERERGITIKLQAARMRYVNEKQPYCLNLIDTPGH 430
ADKLLQ+TGTV+KREMKEQFLDNMDLERERGITIKLQAARMRYV E +PYCLNLIDTPGH
Sbjct: 102 ADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGH 161
Query: 431 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIIVLNKIDLPGAEPD 610
VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEII VLNKIDLPGAEP
Sbjct: 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPV 221
Query: 611 RVSQEIEELIGLDCSEAIYCSAKEGIGINEILDAIVKKVPPPSDTADNPLRALIFDSYYD 790
RVSQEIEE++GLDCS+AI+CSAKEGIGI EIL+AIVK++PPP DTA+ PLRALIFDSYYD
Sbjct: 222 RVSQEIEEVVGLDCSDAIHCSAKEGIGITEILNAIVKRIPPPCDTAERPLRALIFDSYYD 281
Query: 791 PYRGVIVYFRVIDGTIRKGDRIYFMASGKDYYADEIGVLSPNQLQVDELYAGEVGYLSAS 970
PYRGVIVYFRVIDGTI+KGDRIYFMAS KDY+ADEIGVLSPNQLQ DELYAGEVGYL+AS
Sbjct: 282 PYRGVIVYFRVIDGTIKKGDRIYFMASKKDYFADEIGVLSPNQLQADELYAGEVGYLAAS 341
Query: 971 IRSVADARVGDTITQYGRKAVQSLPGYKEATPMVFCGLFPVDADQFPELRDALEKLQLND 1150
IRSVADARVGDTIT YGRKA SLPGY+EATPMVFCGLFPVDAD+FP+LRDALEKLQLND
Sbjct: 342 IRSVADARVGDTITHYGRKAENSLPGYEEATPMVFCGLFPVDADKFPDLRDALEKLQLND 401
Query: 1151 AALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLNLITTAPSVVYQVNCVNGDT 1330
AALKFEPETSSAM HMEI+QERLEREYNL LITTAPSVVY+VNC+NGDT
Sbjct: 402 AALKFEPETSSAMGFGFRCGFLGLLHMEIIQERLEREYNLTLITTAPSVVYRVNCINGDT 461
Query: 1331 VECSNPSALPEPGRRKSIEEPYVKIELLTPKEYIGSLMELTQDRRGEFKEMKYVTENRAS 1510
VECSNPS LPEPG+R SIEEPYVKIE+LTPK+YIG LMEL QDRRGEFKEMK++TENRAS
Sbjct: 462 VECSNPSLLPEPGKRTSIEEPYVKIEMLTPKDYIGPLMELAQDRRGEFKEMKFITENRAS 521
Query: 1511 IIYELPLAEMVGDFFDQLKSRSKGYASMEYSFVG 1612
I YELPLAEMVGDFFDQLKSRSKGYASMEYSF+G
Sbjct: 522 ITYELPLAEMVGDFFDQLKSRSKGYASMEYSFLG 555
>sp|A5B4D2.1|GUFP_VITVI RecName: Full=Translation factor GUF1 homolog, chloroplastic;
AltName: Full=Elongation factor 4 homolog; Short=EF-4;
AltName: Full=GTPase GUF1 homolog; AltName:
Full=Ribosomal back-translocase; Flags: Precursor
gi|147841933|emb|CAN60938.1| hypothetical protein
VITISV_013255 [Vitis vinifera]
Length = 680
Score = 853 bits (2205), Expect = 0.0
Identities = 434/514 (84%), Positives = 465/514 (90%), Gaps = 6/514 (1%)
Frame = +2
Query: 89 RRYVCKAASVVGAEETTQSK--DDI----IVGQSRLLKVPISNIRNFSIIAHIDHGKSTL 250
RR ++A V + TQSK D+ + GQ RLLKVPISNIRNF IIAHIDHGKSTL
Sbjct: 42 RRRSLRSAVVAQSTAGTQSKAPSDVDLAAVSGQDRLLKVPISNIRNFCIIAHIDHGKSTL 101
Query: 251 ADKLLQVTGTVEKREMKEQFLDNMDLERERGITIKLQAARMRYVNEKQPYCLNLIDTPGH 430
ADKLLQ+TGTV+KREMKEQFLDNMDLERERGITIKLQAARMRYV E +PYCLNLIDTPGH
Sbjct: 102 ADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGH 161
Query: 431 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIIVLNKIDLPGAEPD 610
VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEII VLNKIDLPGAEP
Sbjct: 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPV 221
Query: 611 RVSQEIEELIGLDCSEAIYCSAKEGIGINEILDAIVKKVPPPSDTADNPLRALIFDSYYD 790
RVSQEIEE++GLDCS+AI+CSAKEGIGI EIL+AIVK++PPP DTA+ PLRALIFDSYYD
Sbjct: 222 RVSQEIEEVVGLDCSDAIHCSAKEGIGITEILNAIVKRIPPPCDTAERPLRALIFDSYYD 281
Query: 791 PYRGVIVYFRVIDGTIRKGDRIYFMASGKDYYADEIGVLSPNQLQVDELYAGEVGYLSAS 970
PYRGVIVYFRVIDGTI+KGDRIYFMAS KDY+ADEIGVLSPNQLQ DELYAGEVGYL+AS
Sbjct: 282 PYRGVIVYFRVIDGTIKKGDRIYFMASKKDYFADEIGVLSPNQLQADELYAGEVGYLAAS 341
Query: 971 IRSVADARVGDTITQYGRKAVQSLPGYKEATPMVFCGLFPVDADQFPELRDALEKLQLND 1150
IRSVADARVGDTIT YGRKA SLPGY+EATPMVFCGLFPVDAD+FP+LRDALEKLQLND
Sbjct: 342 IRSVADARVGDTITHYGRKAENSLPGYEEATPMVFCGLFPVDADKFPDLRDALEKLQLND 401
Query: 1151 AALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLNLITTAPSVVYQVNCVNGDT 1330
AALKFEPETSSAM HMEI+QERLEREYNL LITTAPSVVY+VNC+NGDT
Sbjct: 402 AALKFEPETSSAMGFGFRCGFLGLLHMEIIQERLEREYNLTLITTAPSVVYRVNCINGDT 461
Query: 1331 VECSNPSALPEPGRRKSIEEPYVKIELLTPKEYIGSLMELTQDRRGEFKEMKYVTENRAS 1510
VECSNPS LPEPG+R SIEEPYVKIE+LTPK+YIG LMEL QDRRGEFKEMK++TENRAS
Sbjct: 462 VECSNPSLLPEPGKRTSIEEPYVKIEMLTPKDYIGPLMELAQDRRGEFKEMKFITENRAS 521
Query: 1511 IIYELPLAEMVGDFFDQLKSRSKGYASMEYSFVG 1612
I YELPLAEMVGDFFDQLKSRSKGYASMEYSF+G
Sbjct: 522 ITYELPLAEMVGDFFDQLKSRSKGYASMEYSFLG 555
>ref|XP_003526892.1| PREDICTED: translation factor GUF1 homolog, chloroplastic-like
[Glycine max]
Length = 687
Score = 834 bits (2155), Expect = 0.0
Identities = 420/508 (82%), Positives = 456/508 (89%)
Frame = +2
Query: 89 RRYVCKAASVVGAEETTQSKDDIIVGQSRLLKVPISNIRNFSIIAHIDHGKSTLADKLLQ 268
R VC+ AS T + G+ RL KVP+ NIRNF IIAHIDHGKSTLADKLLQ
Sbjct: 62 RGAVCRVAS-------TDFESSAKAGEDRLSKVPVRNIRNFCIIAHIDHGKSTLADKLLQ 114
Query: 269 VTGTVEKREMKEQFLDNMDLERERGITIKLQAARMRYVNEKQPYCLNLIDTPGHVDFSYE 448
VTGTV++REMK+QFLDNMDLERERGITIKLQAARMRYV E +PYCLNLIDTPGHVDFSYE
Sbjct: 115 VTGTVQQREMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYE 174
Query: 449 VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIIVLNKIDLPGAEPDRVSQEI 628
VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEII VLNKIDLPGAEPDRV +EI
Sbjct: 175 VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEI 234
Query: 629 EELIGLDCSEAIYCSAKEGIGINEILDAIVKKVPPPSDTADNPLRALIFDSYYDPYRGVI 808
EE++GLDCS AI CSAKEGIGI EIL+AIV ++PPP DT+ PLRALIFDSYYDPYRGVI
Sbjct: 235 EEIVGLDCSNAILCSAKEGIGIIEILNAIVARIPPPEDTSKRPLRALIFDSYYDPYRGVI 294
Query: 809 VYFRVIDGTIRKGDRIYFMASGKDYYADEIGVLSPNQLQVDELYAGEVGYLSASIRSVAD 988
VYFRV+DGTI+KGDR+YFMASGKDY+ADEIGVLSP+QLQV+ELYAGEVGYLSASIR+VAD
Sbjct: 295 VYFRVVDGTIKKGDRVYFMASGKDYFADEIGVLSPSQLQVEELYAGEVGYLSASIRTVAD 354
Query: 989 ARVGDTITQYGRKAVQSLPGYKEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE 1168
ARVGDTIT YGRKA SLPGY+EATPMVFCGLFPVDADQFP+LRDALEKLQLNDAALKFE
Sbjct: 355 ARVGDTITHYGRKADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFE 414
Query: 1169 PETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLNLITTAPSVVYQVNCVNGDTVECSNP 1348
PETSSAM HMEIVQERLEREYNL+LITTAPSVVY+V+CVNGDTVECSNP
Sbjct: 415 PETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVHCVNGDTVECSNP 474
Query: 1349 SALPEPGRRKSIEEPYVKIELLTPKEYIGSLMELTQDRRGEFKEMKYVTENRASIIYELP 1528
S LPEPG+RKSIEEP+VKIE+LTPK+YIG LMEL Q+RRG+FKEMK++ ENRASI YELP
Sbjct: 475 SLLPEPGKRKSIEEPFVKIEMLTPKDYIGPLMELAQERRGQFKEMKFIAENRASITYELP 534
Query: 1529 LAEMVGDFFDQLKSRSKGYASMEYSFVG 1612
LAEMVGDFFDQLKSRSKGYASMEY+FVG
Sbjct: 535 LAEMVGDFFDQLKSRSKGYASMEYTFVG 562
>ref|XP_002873375.1| hypothetical protein ARALYDRAFT_487706 [Arabidopsis lyrata subsp.
lyrata] gi|297319212|gb|EFH49634.1| hypothetical protein
ARALYDRAFT_487706 [Arabidopsis lyrata subsp. lyrata]
Length = 680
Score = 834 bits (2155), Expect = 0.0
Identities = 416/485 (85%), Positives = 449/485 (92%)
Frame = +2
Query: 164 GQSRLLKVPISNIRNFSIIAHIDHGKSTLADKLLQVTGTVEKREMKEQFLDNMDLERERG 343
GQ RLLKVPISNIRNFSIIAHIDHGKSTLADKLLQVTGTV+ R+MKEQFLDNMDLERERG
Sbjct: 73 GQDRLLKVPISNIRNFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKEQFLDNMDLERERG 132
Query: 344 ITIKLQAARMRYVNEKQPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 523
ITIKLQAARMRYV E PYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT
Sbjct: 133 ITIKLQAARMRYVYEDTPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 192
Query: 524 LANVYLALENNLEIIIVLNKIDLPGAEPDRVSQEIEELIGLDCSEAIYCSAKEGIGINEI 703
LANVYLALENNLEII VLNKIDLPGAEP++V +EIEE+IGLDCS+AI+CSAKEGIGI EI
Sbjct: 193 LANVYLALENNLEIIPVLNKIDLPGAEPEKVLREIEEVIGLDCSKAIFCSAKEGIGITEI 252
Query: 704 LDAIVKKVPPPSDTADNPLRALIFDSYYDPYRGVIVYFRVIDGTIRKGDRIYFMASGKDY 883
LDAIV+++P P DTA NPLRALIFDSYYDPYRGVIVYFRVIDG ++KGDRI+FMASGKDY
Sbjct: 253 LDAIVQRIPAPLDTAGNPLRALIFDSYYDPYRGVIVYFRVIDGKVKKGDRIFFMASGKDY 312
Query: 884 YADEIGVLSPNQLQVDELYAGEVGYLSASIRSVADARVGDTITQYGRKAVQSLPGYKEAT 1063
+ADE+GVLSPNQ+QVDELYAGEVGY++AS+RSVADARVGDTIT Y RKA SLPGY+EAT
Sbjct: 313 FADEVGVLSPNQIQVDELYAGEVGYIAASVRSVADARVGDTITHYSRKAESSLPGYEEAT 372
Query: 1064 PMVFCGLFPVDADQFPELRDALEKLQLNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQ 1243
PMVFCGLFPVDADQFP+LRDALEKLQLNDAALKFEPETSSAM HMEIVQ
Sbjct: 373 PMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQ 432
Query: 1244 ERLEREYNLNLITTAPSVVYQVNCVNGDTVECSNPSALPEPGRRKSIEEPYVKIELLTPK 1423
ERLEREYNLNLITTAPSVVY+VN VNGDT CSNPS LP+PG+RKS+EEPYVKIELLTPK
Sbjct: 433 ERLEREYNLNLITTAPSVVYRVNSVNGDTTLCSNPSRLPDPGQRKSVEEPYVKIELLTPK 492
Query: 1424 EYIGSLMELTQDRRGEFKEMKYVTENRASIIYELPLAEMVGDFFDQLKSRSKGYASMEYS 1603
+YIG+LMEL Q+RRGEFKEMKY+ ENRASI+YELPLAEMVGDFFDQLKSR+KGYASMEYS
Sbjct: 493 DYIGALMELAQERRGEFKEMKYIAENRASILYELPLAEMVGDFFDQLKSRTKGYASMEYS 552
Query: 1604 FVG*R 1618
+G R
Sbjct: 553 VIGYR 557
>ref|NP_196482.2| GTP-binding protein LepA [Arabidopsis thaliana]
gi|317411756|sp|Q9FNM5.2|GUFP_ARATH RecName:
Full=Translation factor GUF1 homolog, chloroplastic;
AltName: Full=Elongation factor 4 homolog; Short=EF-4;
AltName: Full=GTPase GUF1 homolog; AltName:
Full=Ribosomal back-translocase; Flags: Precursor
gi|332003951|gb|AED91334.1| GTP-binding protein LepA
[Arabidopsis thaliana]
Length = 681
Score = 830 bits (2145), Expect = 0.0
Identities = 414/485 (85%), Positives = 448/485 (92%)
Frame = +2
Query: 164 GQSRLLKVPISNIRNFSIIAHIDHGKSTLADKLLQVTGTVEKREMKEQFLDNMDLERERG 343
GQ RLLKVPISNIRNFSIIAHIDHGKSTLADKLLQVTGTV+ R+MKEQFLDNMDLERERG
Sbjct: 74 GQDRLLKVPISNIRNFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKEQFLDNMDLERERG 133
Query: 344 ITIKLQAARMRYVNEKQPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 523
ITIKLQAARMRYV E P+CLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT
Sbjct: 134 ITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 193
Query: 524 LANVYLALENNLEIIIVLNKIDLPGAEPDRVSQEIEELIGLDCSEAIYCSAKEGIGINEI 703
LANVYLALENNLEII VLNKIDLPGAEP++V +EIEE+IGLDCS+AI+CSAKEGIGI EI
Sbjct: 194 LANVYLALENNLEIIPVLNKIDLPGAEPEKVLREIEEVIGLDCSKAIFCSAKEGIGITEI 253
Query: 704 LDAIVKKVPPPSDTADNPLRALIFDSYYDPYRGVIVYFRVIDGTIRKGDRIYFMASGKDY 883
LDAIV+++P P DTA PLRALIFDSYYDPYRGVIVYFRVIDG ++KGDRI+FMASGKDY
Sbjct: 254 LDAIVQRIPAPLDTAGKPLRALIFDSYYDPYRGVIVYFRVIDGKVKKGDRIFFMASGKDY 313
Query: 884 YADEIGVLSPNQLQVDELYAGEVGYLSASIRSVADARVGDTITQYGRKAVQSLPGYKEAT 1063
+ADE+GVLSPNQ+QVDELYAGEVGY++AS+RSVADARVGDTIT Y RKA SLPGY+EAT
Sbjct: 314 FADEVGVLSPNQIQVDELYAGEVGYIAASVRSVADARVGDTITHYSRKAESSLPGYEEAT 373
Query: 1064 PMVFCGLFPVDADQFPELRDALEKLQLNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQ 1243
PMVFCGLFPVDADQFP+LRDALEKLQLNDAALKFEPETSSAM HMEIVQ
Sbjct: 374 PMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQ 433
Query: 1244 ERLEREYNLNLITTAPSVVYQVNCVNGDTVECSNPSALPEPGRRKSIEEPYVKIELLTPK 1423
ERLEREYNLNLITTAPSVVY+VN VNGDT CSNPS LP+PG+RKS+EEPYVKIELLTPK
Sbjct: 434 ERLEREYNLNLITTAPSVVYRVNSVNGDTTLCSNPSRLPDPGQRKSVEEPYVKIELLTPK 493
Query: 1424 EYIGSLMELTQDRRGEFKEMKYVTENRASIIYELPLAEMVGDFFDQLKSRSKGYASMEYS 1603
+YIG+LMEL Q+RRGEFKEMKY+ ENRASI+YELPLAEMVGDFFDQLKSR+KGYASMEYS
Sbjct: 494 DYIGALMELAQERRGEFKEMKYIAENRASILYELPLAEMVGDFFDQLKSRTKGYASMEYS 553
Query: 1604 FVG*R 1618
+G R
Sbjct: 554 VIGYR 558