BLASTX nr result

ID: Coptis21_contig00009051 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00009051
         (526 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI25522.3| unnamed protein product [Vitis vinifera]              147   1e-33
ref|XP_002319875.1| predicted protein [Populus trichocarpa] gi|2...   145   3e-33
ref|XP_003526783.1| PREDICTED: uncharacterized protein LOC100814...   144   8e-33
gb|ACU18885.1| unknown [Glycine max]                                  144   8e-33
ref|XP_002329184.1| predicted protein [Populus trichocarpa] gi|2...   143   2e-32

>emb|CBI25522.3| unnamed protein product [Vitis vinifera]
          Length = 464

 Score =  147 bits (370), Expect = 1e-33
 Identities = 78/100 (78%), Positives = 85/100 (85%), Gaps = 9/100 (9%)
 Frame = +3

Query: 3   TSDQDLIISYCKADTDDPLEE-NAGSINISNILTGKCLAKIRASSSDP---QMCCT---- 158
           TSDQDLIISYCKAD+DDPL E NAGSINISNILTGKCLAKI+AS++ P   +  CT    
Sbjct: 365 TSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNNFPMENECSCTHASA 424

Query: 159 -RTRNTVSEALEDITALFYDEERNEIYTGNRQGLVHVWSN 275
            R R+TV+EALEDITALFYDEERNEIYTGNR GLVHVWSN
Sbjct: 425 SRIRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 464


>ref|XP_002319875.1| predicted protein [Populus trichocarpa] gi|222858251|gb|EEE95798.1|
           predicted protein [Populus trichocarpa]
          Length = 403

 Score =  145 bits (367), Expect = 3e-33
 Identities = 74/102 (72%), Positives = 80/102 (78%), Gaps = 11/102 (10%)
 Frame = +3

Query: 3   TSDQDLIISYCKADTDDPLEENAGSINISNILTGKCLAKIRASSSDP-----------QM 149
           TSDQDLIISYCKAD+DDPL E  GSINISNILTGKCLAKI+A +S P            M
Sbjct: 302 TSDQDLIISYCKADSDDPLSEGNGSINISNILTGKCLAKIKAGNSFPNENECSQSSKKHM 361

Query: 150 CCTRTRNTVSEALEDITALFYDEERNEIYTGNRQGLVHVWSN 275
           C +  R+T +EALEDITALFYDEERNEIYTGNR GLVHVWSN
Sbjct: 362 CASTVRSTAAEALEDITALFYDEERNEIYTGNRLGLVHVWSN 403


>ref|XP_003526783.1| PREDICTED: uncharacterized protein LOC100814724 [Glycine max]
          Length = 478

 Score =  144 bits (363), Expect = 8e-33
 Identities = 78/111 (70%), Positives = 85/111 (76%), Gaps = 20/111 (18%)
 Frame = +3

Query: 3   TSDQDLIISYCKADTDDPLEE-NAGSINISNILTGKCLAKIRASSSDP-----------Q 146
           TSDQDLIISYCKAD+DD L E NAGSIN+SNILTGKCLAKIRAS+S P            
Sbjct: 368 TSDQDLIISYCKADSDDSLSEGNAGSINVSNILTGKCLAKIRASNSFPVDNSCSDNPSGS 427

Query: 147 MCC--------TRTRNTVSEALEDITALFYDEERNEIYTGNRQGLVHVWSN 275
            CC        ++TR+TV+EALEDITALFYDEERNEIYTGNR GLVHVWSN
Sbjct: 428 CCCNSKKRKHGSKTRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 478


>gb|ACU18885.1| unknown [Glycine max]
          Length = 239

 Score =  144 bits (363), Expect = 8e-33
 Identities = 78/111 (70%), Positives = 85/111 (76%), Gaps = 20/111 (18%)
 Frame = +3

Query: 3   TSDQDLIISYCKADTDDPLEE-NAGSINISNILTGKCLAKIRASSSDP-----------Q 146
           TSDQDLIISYCKAD+DD L E NAGSIN+SNILTGKCLAKIRAS+S P            
Sbjct: 129 TSDQDLIISYCKADSDDSLSEGNAGSINVSNILTGKCLAKIRASNSFPVDNSCSDNPSGS 188

Query: 147 MCC--------TRTRNTVSEALEDITALFYDEERNEIYTGNRQGLVHVWSN 275
            CC        ++TR+TV+EALEDITALFYDEERNEIYTGNR GLVHVWSN
Sbjct: 189 CCCNSKKRKHGSKTRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 239


>ref|XP_002329184.1| predicted protein [Populus trichocarpa] gi|222870965|gb|EEF08096.1|
           predicted protein [Populus trichocarpa]
          Length = 474

 Score =  143 bits (360), Expect = 2e-32
 Identities = 77/103 (74%), Positives = 83/103 (80%), Gaps = 12/103 (11%)
 Frame = +3

Query: 3   TSDQDLIISYCKADTDDPLEE-NAGSINISNILTGKCLAKIRASSSDPQM--C------- 152
           TSDQDLIISYCKAD+DDPL E NAGSINISNILTGKCLAKI+AS+S P    C       
Sbjct: 372 TSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNSFPNENECGQNSKKH 431

Query: 153 --CTRTRNTVSEALEDITALFYDEERNEIYTGNRQGLVHVWSN 275
              +R R+T +EALEDITALFYDEERNEIYTGNR GLVHVWSN
Sbjct: 432 RHASRIRSTAAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 474


Top